Login Name Tty Idle Login Time Office Office Phone emsley Paul Emsley tty8 189d Sep 12 17:19 (:0) emsley Paul Emsley pts/0 8:49 Sep 12 17:20 (:0.0) emsley Paul Emsley pts/1 8:48 Sep 12 17:53 (:0.0) emsley Paul Emsley pts/2 8:47 Sep 12 19:51 (:0.0) emsley Paul Emsley pts/3 10:30 Sep 12 18:02 (:0.0) emsley Paul Emsley pts/5 10:32 Sep 12 18:07 (:0.0) emsley Paul Emsley pts/6 10:26 Sep 12 18:13 (:0.0) From tar file: /home/emsley/autobuild/building/sources/coot-0.8-pre-revision-4759.tar.gz building in: /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre ./configure --prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-mmdb-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-clipper-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-ssmlib-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-goocanvas-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-glut-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-guile --with-guile-gtk --with-guile-gtk-prefix=/home/emsley/autobuild/installed-pre-release-gtk2-python --with-python --with-pygtk --disable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1966080 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for gcc option to support OpenMP... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for MMDB... yes checking for ssm library... /home/emsley/autobuild/installed-pre-release-gtk2-python checking for CCP4SRS... no checking for Clipper... yes Congratulations, you are using Guile checking for guile... /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/guile checking for guile-config... /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/guile-config checking for guile-tools... /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/guile-tools checking libguile compile flags... -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread checking libguile link flags... -P -pthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lguile -lltdl -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgmp -lcrypt -lm -lltdl checking for Guile-Lib... yes checking for guile-gui... yes checking GUILE_VERSION: 1.8 checking for gsl-config... /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for glLineWidth in -lGL... yes checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for guile-gtk... /home/emsley/autobuild/installed-pre-release-gtk2-python checking libglade... yes checking for Goocanvas... yes Not using database checking for curl >= 7.9.7... 7.27.0 /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/curl-config: line 140: CPPFLAG_CURL_STATICLIB: command not found checking build type... Linux-x86_64-red-hat-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating libgtkgraph/Makefile config.status: creating goograph/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating pixmaps/Makefile config.status: creating rama-data/Makefile config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating rcrane/Makefile config.status: executing depfiles commands config.status: executing libtool commands Making all in auxil make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' Making all in catcheck make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' Making all in rama make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' Making all in sec-str make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' Making all in strand-analysis make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' Making all in vectors make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' Making all in scheme make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' Making all in python make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' Making all in pdb-templates make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' Making all in macros make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' Making all in compat make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -g -O2 -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o mv -f .deps/getopt1.Tpo .deps/getopt1.Plo mv -f .deps/getopt.Tpo .deps/getopt.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libcoot-compat.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib getopt.lo getopt1.lo libtool: link: ar cru .libs/libcoot-compat.a getopt.o getopt1.o libtool: link: ranlib .libs/libcoot-compat.a libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' Making all in utils make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c -o gdk-keysyms.lo gdk-keysyms.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -o atomic-numbers.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -o gdk-keysyms.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c -o hsv-rgb.lo hsv-rgb.cc mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c hsv-rgb.cc -o hsv-rgb.o mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo mv -f .deps/hsv-rgb.Tpo .deps/hsv-rgb.Plo mv -f .deps/gdk-keysyms.Tpo .deps/gdk-keysyms.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-utils.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-utils.lo coot-fasta.lo atomic-numbers.lo gdk-keysyms.lo hsv-rgb.lo libtool: link: ar cru .libs/libcoot-utils.a coot-utils.o coot-fasta.o atomic-numbers.o gdk-keysyms.o hsv-rgb.o libtool: link: ranlib .libs/libcoot-utils.a libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' Making all in protein_db make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c -o protein_db.lo protein_db.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c -o protein_db_utils.lo protein_db_utils.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp -o rna_db.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -o protein_db_utils.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -o protein_db.o mv -f .deps/rna_db.Tpo .deps/rna_db.Plo mv -f .deps/protein_db_utils.Tpo .deps/protein_db_utils.Plo mv -f .deps/protein_db.Tpo .deps/protein_db.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-protein-db.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib protein_db.lo protein_db_utils.lo rna_db.lo -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-protein-db.a protein_db.o protein_db_utils.o rna_db.o libtool: link: ranlib .libs/libcoot-protein-db.a libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' Making all in mini-mol make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c -o atom-quads.lo atom-quads.cc g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT testminimol.o -MD -MP -MF .deps/testminimol.Tpo -c -o testminimol.o testminimol.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -o atom-quads.o mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo mv -f .deps/testminimol.Tpo .deps/testminimol.Po mv -f .deps/atom-quads.Tpo .deps/atom-quads.Plo mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-mini-mol.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib mini-mol.lo mini-mol-utils.lo atom-quads.lo -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcoot-mini-mol.a mini-mol.o mini-mol-utils.o atom-quads.o libtool: link: ranlib .libs/libcoot-mini-mol.a libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o testminimol testminimol.o libcoot-mini-mol.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -g -O -o testminimol testminimol.o ./.libs/libcoot-mini-mol.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' Making all in geometry make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" 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-MD -MP -MF .deps/test-read-components.Tpo -c -o test-read-components.o test-read-components.cc mv -f .deps/chem_mods.Tpo .deps/chem_mods.Plo mv -f .deps/test-read-components.Tpo .deps/test-read-components.Po mv -f .deps/test-geometry.Tpo .deps/test-geometry.Po mv -f .deps/protein-geometry.Tpo .deps/protein-geometry.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-geometry.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo chem_mods.lo lbg-graph.lo dreiding.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-geometry.a protein-geometry.o protein-geometry-mmdb.o read-sbase.o energy-lib.o chem_mods.o lbg-graph.o dreiding.o libtool: link: ranlib .libs/libcoot-geometry.a libtool: link: ( cd ".libs" && rm -f "libcoot-geometry.la" && ln -s "../libcoot-geometry.la" "libcoot-geometry.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-geometry test-geometry.o ./libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-read-components test-read-components.o ./libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-geometry test-geometry.o ./.libs/libcoot-geometry.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-read-components test-read-components.o ./.libs/libcoot-geometry.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' Making all in coot-utils make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c -o coot-rama.lo coot-rama.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -o coot-coord-utils.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c coot-h-bonds.cc -o coot-h-bonds.o mv -f .deps/coot-rama.Tpo .deps/coot-rama.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c -o hole.lo hole.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c hole.cc -o hole.o mv -f .deps/coot-coord-utils-nucleotides.Tpo .deps/coot-coord-utils-nucleotides.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c -o read-sm-cif.lo read-sm-cif.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c read-sm-cif.cc -o read-sm-cif.o mv -f .deps/coot-h-bonds.Tpo .deps/coot-h-bonds.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT test-utils.o -MD -MP -MF .deps/test-utils.Tpo -c -o test-utils.o test-utils.cc mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT test-hole.o -MD -MP -MF .deps/test-hole.Tpo -c -o test-hole.o test-hole.cc mv -f .deps/test-h-bonds.Tpo .deps/test-h-bonds.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT test-elastic.o -MD -MP -MF .deps/test-elastic.Tpo -c -o test-elastic.o test-elastic.cc mv -f .deps/test-elastic.Tpo .deps/test-elastic.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT test-spherical.o -MD -MP -MF .deps/test-spherical.Tpo -c -o test-spherical.o test-spherical.cc mv -f .deps/test-spherical.Tpo .deps/test-spherical.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-coord-utils.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-coord-utils.lo coot-coord-utils-nucleotides.lo coot-rama.lo coot-h-bonds.lo hole.lo read-sm-cif.lo bonded-pairs.lo helix-analysis.lo elastic.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-coord-utils.a coot-coord-utils.o coot-coord-utils-nucleotides.o coot-rama.o coot-h-bonds.o hole.o read-sm-cif.o bonded-pairs.o helix-analysis.o elastic.o mv -f .deps/test-hole.Tpo .deps/test-hole.Po libtool: link: ranlib .libs/libcoot-coord-utils.a mv -f .deps/coot-map-utils.Tpo .deps/coot-map-utils.Plo libtool: link: ( cd ".libs" && rm -f "libcoot-coord-utils.la" && ln -s "../libcoot-coord-utils.la" "libcoot-coord-utils.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-shelx.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-shelx-ins.lo libcoot-coord-utils.la ../utils/libcoot-utils.la /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-coord-extras.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-map-utils.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo libcoot-coord-utils.la mv -f .deps/test-utils.Tpo .deps/test-utils.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-h-bonds test-h-bonds.o ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la libtool: link: ar cru .libs/libcoot-map-utils.a coot-map-utils.o peak-search.o peak-search-from-list.o trim.o xmap-stats.o libtool: link: ar cru .libs/libcoot-shelx.a coot-shelx-ins.o libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-h-bonds test-h-bonds.o ./.libs/libcoot-coord-utils.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread ../utils/.libs/libcoot-utils.a -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: ranlib .libs/libcoot-map-utils.a /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-hole test-hole.o ./libcoot-coord-utils.la ../utils/libcoot-utils.la libtool: link: ar cru .libs/libcoot-coord-extras.a coot-coord-extras.o coot-coord-lsq.o coot-tree-extras.o water-coordination.o lsq-improve.o coot-coord-utils-glyco.o libtool: link: ranlib .libs/libcoot-shelx.a libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-hole test-hole.o ./.libs/libcoot-coord-utils.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so ../utils/.libs/libcoot-utils.a -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: ranlib .libs/libcoot-coord-extras.a libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-elastic test-elastic.o ./libcoot-coord-utils.la libtool: link: ( cd ".libs" && rm -f "libcoot-shelx.la" && ln -s "../libcoot-shelx.la" "libcoot-shelx.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o test-spherical test-spherical.o ./libcoot-coord-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-elastic test-elastic.o ./.libs/libcoot-coord-utils.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-map-heavy.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-map-heavy.lo coot-fffear.lo libcoot-map-utils.la libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-extras.la ./libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o test-spherical test-spherical.o ./.libs/libcoot-coord-utils.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o testshelxreader test-shelx-reader.o ./.libs/libcoot-shelx.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ./.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread ../utils/.libs/libcoot-utils.a -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DHAVE_GSL -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o testcootutils test-utils.o ./.libs/libcoot-shelx.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib ./.libs/libcoot-coord-extras.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ./.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread ../utils/.libs/libcoot-utils.a -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: ar cru .libs/libcoot-map-heavy.a coot-map-heavy.o coot-fffear.o libtool: link: ranlib .libs/libcoot-map-heavy.a libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' Making all in surface make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c -o CXXSphereElement.lo CXXSphereElement.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c -o CXXChargeTable.lo CXXChargeTable.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c -o CXXSphereNode.lo CXXSphereNode.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c -o CXXCircle.lo CXXCircle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp -o CXXChargeTable.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -o CXXSphereNode.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" 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-DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo CXXQADSurfaceStaticData.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o mv -f .deps/CXXQADSurfaceStaticData.Tpo .deps/CXXQADSurfaceStaticData.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c -o CXXUtils.lo CXXUtils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I../coot-utils -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -fopenmp -g -O -MT CXXUtils.lo -MD -MP -MF .deps/CXXUtils.Tpo -c CXXUtils.cpp -o CXXUtils.o mv -f .deps/CXXBall.Tpo .deps/CXXBall.Plo mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo mv -f .deps/CXXUtils.Tpo .deps/CXXUtils.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O -o libccp4mg-surface.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libccp4mg-surface.a CXXSphereElement.o CXXChargeTable.o CXXSphereNode.o CXXCircle.o CXXSphereTriangle.o CXXCircleNode.o CXXSphereTriangleEdge.o CXXCoord.o CXXSurface.o CXXCreator.o CXXSurfaceVertex.o CXXException.o CXXTorusElement.o CXXFFTSolventMap.o CXXTorusNode.o CXXFortranFile.o CXXNewHood.o CXXTriangle.o CXXNode.o CXXQADSurface.o CXXBall.o CXXQADSurfaceStaticData.o CXXSpace.o CXXUtils.o libtool: link: ranlib .libs/libccp4mg-surface.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-surface.la" && ln -s "../libccp4mg-surface.la" "libccp4mg-surface.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' Making all in coot-surface make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-surface.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib coot-surface.lo rgbreps.lo ../surface/libccp4mg-surface.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lglut -L/usr/X11R6/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lGL libtool: link: ar cru .libs/libcoot-surface.a coot-surface.o rgbreps.o libtool: link: ranlib .libs/libcoot-surface.a libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' Making all in lidia-core make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lbg-shared.lo -MD -MP -MF .deps/lbg-shared.Tpo -c -o lbg-shared.lo lbg-shared.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c -o lbg-molfile.lo lbg-molfile.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c -o lig-build.lo lig-build.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c -o rdkit-interface.lo rdkit-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -o rdkit-interface.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c lig-build.cc -o lig-build.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lbg-shared.lo -MD -MP -MF .deps/lbg-shared.Tpo -c lbg-shared.cc -o lbg-shared.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -o lbg-molfile.o mv -f .deps/rdkit-interface.Tpo .deps/rdkit-interface.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cod-types.lo -MD -MP -MF .deps/cod-types.Tpo -c -o cod-types.lo cod-types.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cod-types.lo -MD -MP -MF .deps/cod-types.Tpo -c cod-types.cc -o cod-types.o mv -f .deps/cod-types.Tpo .deps/cod-types.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT test-cod-atom-types.o -MD -MP -MF .deps/test-cod-atom-types.Tpo -c -o test-cod-atom-types.o test-cod-atom-types.cc mv -f .deps/test-cod-atom-types.Tpo .deps/test-cod-atom-types.Po mv -f .deps/lbg-shared.Tpo .deps/lbg-shared.Plo mv -f .deps/lig-build.Tpo .deps/lig-build.Plo mv -f .deps/lbg-molfile.Tpo .deps/lbg-molfile.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-lidia-core.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib lbg-shared.lo lbg-molfile.lo lig-build.lo rdkit-interface.lo cod-types.lo ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la libtool: link: ar cru .libs/libcoot-lidia-core.a lbg-shared.o lbg-molfile.o lig-build.o rdkit-interface.o cod-types.o libtool: link: ranlib .libs/libcoot-lidia-core.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia-core.la" && ln -s "../libcoot-lidia-core.la" "libcoot-lidia-core.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o test-cod-atom-types test-cod-atom-types.o libcoot-lidia-core.la ../coot-utils/libcoot-coord-utils.la libtool: link: g++ -g -O -o test-cod-atom-types test-cod-atom-types.o ./.libs/libcoot-lidia-core.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib ../coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lm -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' Making all in coords make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c -o Bond_lines.lo Bond_lines.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -g -O -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o mv -f .deps/Bond_lines_ext.Tpo .deps/Bond_lines_ext.Plo mv -f .deps/coot-close.Tpo .deps/coot-close.Plo mv -f .deps/mmdb-extras.Tpo .deps/mmdb-extras.Plo mv -f .deps/Bond_lines.Tpo .deps/Bond_lines.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -o libcoot-coords.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-coords.a Bond_lines.o Cartesian.o cos-sin.o mmdb-extras.o utils.o mmdb.o mmdb-crystal.o Bond_lines_ext.o coot-close.o libtool: link: ranlib .libs/libcoot-coords.a libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' Making all in angles make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O1 -g -O -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o mv -f .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Plo mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo mv -f .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O1 -g -O -o libcoot-AngleInfo.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: ar cru .libs/libcoot-AngleInfo.a libcoot_AngleInfo_la-AngleInfo.o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: link: ranlib .libs/libcoot-AngleInfo.a libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' Making all in skeleton make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/skeleton' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" 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-MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c -o BuildCas.lo BuildCas.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -o graphical_skel.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -o mgtree.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -o matrix.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -o cartesian.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -o geomutil.o mv -f .deps/cartesian.Tpo .deps/cartesian.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c -o quat.lo quat.cc mv -f .deps/geomutil.Tpo .deps/geomutil.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -o quat.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_LIBPNG -g -O -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o mv -f .deps/quat.Tpo .deps/quat.Plo mv -f .deps/matrix.Tpo .deps/matrix.Plo mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo mv -f .deps/mgtree.Tpo .deps/mgtree.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libccp4mg-utils.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng libtool: link: ar cru .libs/libccp4mg-utils.a geomutil.o mgtree.o cartesian.o matrix.o quat.o ppmutil.o libtool: link: ranlib .libs/libccp4mg-utils.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils' Making all in density-contour make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo Vectors.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo density-contour-triangles.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -o density-contour-triangles.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o mv -f .deps/Vectors.Tpo .deps/Vectors.Plo mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-isosurface.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib Vectors.lo CIsoSurface.lo density-contour-triangles.lo ../coords/libcoot-coords.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcoot-isosurface.a Vectors.o CIsoSurface.o density-contour-triangles.o libtool: link: ranlib .libs/libcoot-isosurface.a libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' Making all in db-main make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c -o db-main.lo db-main.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c -o db-strands.lo db-strands.cc g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -MT testdbmain.o -MD -MP -MF .deps/testdbmain.Tpo -c -o testdbmain.o testdbmain.cc g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -MT train-pepflip.o -MD -MP -MF .deps/train-pepflip.Tpo -c -o train-pepflip.o train-pepflip.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -g -O -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -o db-main.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -g -O -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o mv -f .deps/testdbmain.Tpo .deps/testdbmain.Po mv -f .deps/train-pepflip.Tpo .deps/train-pepflip.Po mv -f .deps/db-strands.Tpo .deps/db-strands.Plo mv -f .deps/db-main.Tpo .deps/db-main.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -o libcoot-db-main.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib db-main.lo db-strands.lo ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-db-main.a db-main.o db-strands.o libtool: link: ranlib .libs/libcoot-db-main.a libtool: link: ( cd ".libs" && rm -f "libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -o testdbmain testdbmain.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -g -O -o train-pepflip train-pepflip.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -g -O -o testdbmain testdbmain.o ./.libs/libcoot-db-main.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -g -O -o train-pepflip train-pepflip.o ./.libs/libcoot-db-main.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' Making all in ideal make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-lpthread -o libcoot-ideal.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib simple-restraint.lo chirals.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcoot-ideal.a simple-restraint.o chirals.o extra-restraints.o pepflip.o regularize-minimol.o lograma.o extra-restraints-kk.o simple-restraint-kk.o torsion-bonds.o coot-compare-residues.o libtool: link: ranlib .libs/libcoot-ideal.a libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -o mini-rsr mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la ../mini-mol/libcoot-mini-mol.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -o with-geometry with-geometry.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -o logramatest logramatest.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../lidia-core/libcoot-lidia-core.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -o logramatest logramatest.o -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python ./.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../lidia-core/.libs/libcoot-lidia-core.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-extras.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -o with-geometry with-geometry.o -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python ./.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DHAVE_GSL -g -O -o mini-rsr mini-rsr.o -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python ./.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' Making all in ligand make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c -o ligand.lo ligand.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c -o ligand-extras.lo ligand-extras.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -o residue_by_phi_psi.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc -o ligand-extras.o mv -f 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-DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT dipole.lo -MD -MP -MF .deps/dipole.Tpo -c dipole.cc -o dipole.o mv -f .deps/rotamer-tables.Tpo .deps/rotamer-tables.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c -o base-pairing.lo base-pairing.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT base-pairing.lo -MD -MP -MF .deps/base-pairing.Tpo -c base-pairing.cc -o base-pairing.o mv -f .deps/base-pairing.Tpo .deps/base-pairing.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c -o backrub-rotamer.lo backrub-rotamer.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT backrub-rotamer.lo -MD -MP -MF .deps/backrub-rotamer.Tpo -c backrub-rotamer.cc -o backrub-rotamer.o mv -f .deps/dipole.Tpo .deps/dipole.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc mv -f .deps/richardson-rotamers.Tpo .deps/richardson-rotamers.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc mv -f .deps/backrub-rotamer.Tpo .deps/backrub-rotamer.Plo mv -f .deps/chi-angles-autogen.Tpo .deps/chi-angles-autogen.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-ligand.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po mv -f .deps/find-waters.Tpo .deps/find-waters.Po libtool: link: ar cru .libs/libcoot-ligand.a ligand.o ligand-extras.o residue_by_phi_psi.o wiggly-ligand.o monomer-utils.o dunbrack.o chi-angles-autogen.o chi-angles.o helix-placement.o fast-ss-search.o rigid-body.o ideal-rna.o richardson-rotamers.o richardson-rotamer.o rotamer.o torsion-general.o rotamer-tables.o primitive-chi-angles.o dipole.o base-pairing.o backrub-rotamer.o libtool: link: ranlib .libs/libcoot-ligand.a libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o findligand-real find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o findwaters-real find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o findwaters-real find-waters.o ./.libs/libcoot-ligand.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main/.libs/libcoot-db-main.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils/.libs/libccp4mg-utils.a ../ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../db-main/.libs/libcoot-db-main.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -fopenmp -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o findligand-real find-ligand.o ./.libs/libcoot-ligand.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main/.libs/libcoot-db-main.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils/.libs/libccp4mg-utils.a ../ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../db-main/.libs/libcoot-db-main.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../compat/.libs/libcoot-compat.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so 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`/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c -o high-res.lo high-res.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c -o coot-atom-graph.lo coot-atom-graph.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c -o residue-distortions.lo residue-distortions.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc -o high-res.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc -o coot-atom-graph.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -o residue-distortions.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -o sequence-assignment.o mv -f .deps/residue-distortions.Tpo .deps/residue-distortions.Plo mv -f .deps/high-res.Tpo .deps/high-res.Plo mv -f .deps/sequence-assignment.Tpo .deps/sequence-assignment.Plo mv -f .deps/coot-atom-graph.Tpo .deps/coot-atom-graph.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -g -O -o libcoot-high-res.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../mini-mol/libcoot-mini-mol.la ../ligand/libcoot-ligand.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: ar cru .libs/libcoot-high-res.a high-res.o coot-atom-graph.o residue-distortions.o sequence-assignment.o libtool: link: ranlib .libs/libcoot-high-res.a libtool: link: ( cd ".libs" && rm -f "libcoot-high-res.la" && ln -s "../libcoot-high-res.la" "libcoot-high-res.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' Making all in build make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c -o CalphaBuild.lo CalphaBuild.cc g++ -DPACKAGE_NAME=\"\" 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link: ar cru .libs/libcoot-cabuild.a CalphaBuild.o libtool: link: ranlib .libs/libcoot-cabuild.a libtool: link: ( cd ".libs" && rm -f "libcoot-cabuild.la" && ln -s "../libcoot-cabuild.la" "libcoot-cabuild.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o testcabuild testcabuild.o ./libcoot-cabuild.la ../angles/libcoot-AngleInfo.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -g -O -o testcabuild testcabuild.o ./.libs/libcoot-cabuild.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles/.libs/libcoot-AngleInfo.a ../angles/.libs/libcoot-AngleInfo.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' Making all in greg-tests make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' Making all in python-tests make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' Making all in analysis make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c -o bfkurt.lo bfkurt.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mogul.lo -MD -MP -MF .deps/mogul.Tpo -c -o mogul.lo mogul.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT kolmogorov.lo -MD -MP -MF .deps/kolmogorov.Tpo -c -o kolmogorov.lo kolmogorov.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cablam.lo -MD -MP -MF .deps/cablam.Tpo -c -o cablam.lo cablam.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT kolmogorov.lo -MD -MP -MF .deps/kolmogorov.Tpo -c kolmogorov.cc -o kolmogorov.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT mogul.lo -MD -MP -MF .deps/mogul.Tpo -c mogul.cc -o mogul.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c bfkurt.cc -o bfkurt.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cablam.lo -MD -MP -MF .deps/cablam.Tpo -c cablam.cc -o cablam.o mv -f .deps/kolmogorov.Tpo .deps/kolmogorov.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o bfactan.cc mv -f .deps/cablam.Tpo .deps/cablam.Plo mv -f .deps/bfactan.Tpo .deps/bfactan.Po mv -f .deps/bfkurt.Tpo .deps/bfkurt.Plo mv -f .deps/mogul.Tpo .deps/mogul.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-analysis.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib bfkurt.lo mogul.lo kolmogorov.lo cablam.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: ar cru .libs/libcoot-analysis.a bfkurt.o mogul.o kolmogorov.o cablam.o libtool: link: ranlib .libs/libcoot-analysis.a libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -g -O -o bfactan bfactan.o ./.libs/libcoot-analysis.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so ../coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a ../geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' Making all in tw make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT tiddly.o -MD -MP -MF .deps/tiddly.Tpo -c -o tiddly.o tiddly.cc mv -f .deps/tiddly.Tpo .deps/tiddly.Po libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o mv -f .deps/tw.Tpo .deps/tw.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-tw.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib tw.lo libtool: link: ar cru .libs/libcoot-tw.a tw.o libtool: link: ranlib .libs/libcoot-tw.a libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o coot-tiddly tiddly.o libcoot-tw.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -o coot-tiddly tiddly.o ./.libs/libcoot-tw.a -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' Making all in libgtkgraph make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c -o annotation.lo annotation.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c -o polar_util.lo polar_util.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c -o trace.lo trace.c /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c -o axis.lo axis.c libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c annotation.c -o annotation.o libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c trace.c -o trace.o libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c polar_util.c -o polar_util.o libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c axis.c -o axis.o mv -f .deps/polar_util.Tpo .deps/polar_util.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c -o gtkgraph.lo gtkgraph.c libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c gtkgraph.c -o gtkgraph.o mv -f .deps/axis.Tpo .deps/axis.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c -o polar.lo polar.c mv -f .deps/annotation.Tpo .deps/annotation.Plo /bin/sh ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c -o smith.lo smith.c libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c polar.c -o polar.o mv -f .deps/trace.Tpo .deps/trace.Plo libtool: compile: gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O2 -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c smith.c -o smith.o mv -f .deps/polar.Tpo .deps/polar.Plo mv -f .deps/smith.Tpo .deps/smith.Plo mv -f .deps/gtkgraph.Tpo .deps/gtkgraph.Plo /bin/sh ../libtool --tag=CC --mode=link gcc -g -O2 -o libcoot-gtkgraph.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib annotation.lo polar_util.lo trace.lo axis.lo gtkgraph.lo polar.lo smith.lo -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -lm libtool: link: ar cru .libs/libcoot-gtkgraph.a annotation.o polar_util.o trace.o axis.o gtkgraph.o polar.o smith.o libtool: link: ranlib .libs/libcoot-gtkgraph.a libtool: link: ( cd ".libs" && rm -f "libcoot-gtkgraph.la" && ln -s "../libcoot-gtkgraph.la" "libcoot-gtkgraph.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' Making all in lbg make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c -o lbg.lo lbg.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo wmolecule.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo lbg-search.cc /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-MF .deps/residue-circles.Tpo -c -o residue-circles.lo residue-circles.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -o residue-circles.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -o lbg-search.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 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-I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -o wmolecule.o mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -o flev-annotations.o mv -f .deps/flev-annotations.Tpo .deps/flev-annotations.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c -o qed-interface.lo qed-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c qed-interface.cc -o qed-interface.o mv -f .deps/qed-interface.Tpo .deps/qed-interface.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c -o alerts.lo alerts.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c alerts.cc -o alerts.o mv -f .deps/alerts.Tpo .deps/alerts.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c -o alerts-list.lo alerts-list.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c alerts-list.cc -o alerts-list.o mv -f .deps/alerts-list.Tpo .deps/alerts-list.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o lidia-main.cc mv -f .deps/lbg-drag-and-drop.Tpo .deps/lbg-drag-and-drop.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po mv -f .deps/lbg.Tpo .deps/lbg.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -o libcoot-lidia.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib lbg.lo wmolecule.lo lbg-search.lo residue-circles.lo flev-annotations.lo lbg-drag-and-drop.lo qed-interface.lo alerts.lo alerts-list.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 libtool: link: ar cru .libs/libcoot-lidia.a lbg.o wmolecule.o lbg-search.o residue-circles.o flev-annotations.o lbg-drag-and-drop.o qed-interface.o alerts.o alerts-list.o libtool: link: ranlib .libs/libcoot-lidia.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -g -O -Wl,--export-dynamic -o lidia lidia-main.o lbg-callbacks-outer.o ./libcoot-lidia.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/python2.7/config -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker -export-dynamic -ldl -lutil libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -g -O -Wl,--export-dynamic -o lidia lidia-main.o lbg-callbacks-outer.o -Wl,-export-dynamic ./.libs/libcoot-lidia.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/python2.7/config -lpthread -lm -lpython2.7 -ldl -lutil -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libpython2.7.a(posixmodule.o): In function `posix_tmpnam': /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-07-31__T14_01_18/Python-2.7.5/./Modules/posixmodule.c:7515: warning: the use of `tmpnam_r' is dangerous, better use `mkstemp' /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libpython2.7.a(posixmodule.o): In function `posix_tempnam': /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-07-31__T14_01_18/Python-2.7.5/./Modules/posixmodule.c:7462: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' Making all in cootaneer make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c -o buccaneer-lib.lo buccaneer-lib.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c -o buccaneer-prot.lo buccaneer-prot.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c -o buccaneer-sequence.lo buccaneer-sequence.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -o buccaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c cootaneer-sequence.cpp -o cootaneer-sequence.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -o buccaneer-prot.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -o buccaneer-lib.o mv -f .deps/buccaneer-lib.Tpo .deps/buccaneer-lib.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootaneer-demo.o -MD -MP -MF .deps/cootaneer-demo.Tpo -c -o cootaneer-demo.o cootaneer-demo.cpp mv -f .deps/cootaneer-sequence.Tpo .deps/cootaneer-sequence.Plo mv -f .deps/buccaneer-prot.Tpo .deps/buccaneer-prot.Plo mv -f .deps/buccaneer-sequence.Tpo .deps/buccaneer-sequence.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcootaneer.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib buccaneer-lib.lo buccaneer-prot.lo buccaneer-sequence.lo cootaneer-sequence.lo -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread mv -f .deps/cootaneer-demo.Tpo .deps/cootaneer-demo.Po libtool: link: ar cru .libs/libcootaneer.a buccaneer-lib.o buccaneer-prot.o buccaneer-sequence.o cootaneer-sequence.o libtool: link: ranlib .libs/libcootaneer.a libtool: link: ( cd ".libs" && rm -f "libcootaneer.la" && ln -s "../libcootaneer.la" "libcootaneer.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o cootaneer-demo cootaneer-demo.o ./libcootaneer.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -g -O -o cootaneer-demo cootaneer-demo.o ./.libs/libcootaneer.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' Making all in cootilus make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nucleicacid_db.lo -MD -MP -MF .deps/nucleicacid_db.Tpo -c -o nucleicacid_db.lo nucleicacid_db.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-tools.lo -MD -MP -MF .deps/nautilus-tools.Tpo -c -o nautilus-tools.lo nautilus-tools.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-ss-find.lo -MD -MP -MF .deps/nautilus-ss-find.Tpo -c -o nautilus-ss-find.lo nautilus-ss-find.cpp /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-join.lo -MD -MP -MF .deps/nautilus-join.Tpo -c -o nautilus-join.lo nautilus-join.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-tools.lo -MD -MP -MF .deps/nautilus-tools.Tpo -c nautilus-tools.cpp -o nautilus-tools.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-join.lo -MD -MP -MF .deps/nautilus-join.Tpo -c nautilus-join.cpp -o nautilus-join.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nucleicacid_db.lo -MD -MP -MF .deps/nucleicacid_db.Tpo -c nucleicacid_db.cpp -o nucleicacid_db.o libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-ss-find.lo -MD -MP -MF .deps/nautilus-ss-find.Tpo -c nautilus-ss-find.cpp -o nautilus-ss-find.o mv -f .deps/nautilus-ss-find.Tpo .deps/nautilus-ss-find.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c -o nautilus-target.lo nautilus-target.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c nautilus-target.cpp -o nautilus-target.o mv -f .deps/nautilus-tools.Tpo .deps/nautilus-tools.Plo /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootilus-build.lo -MD -MP -MF .deps/cootilus-build.Tpo -c -o cootilus-build.lo cootilus-build.cpp mv -f .deps/nucleicacid_db.Tpo .deps/nucleicacid_db.Plo g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootilus-demo.o -MD -MP -MF .deps/cootilus-demo.Tpo -c -o cootilus-demo.o cootilus-demo.cpp libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -g -O -MT cootilus-build.lo -MD -MP -MF .deps/cootilus-build.Tpo -c cootilus-build.cpp -o cootilus-build.o mv -f .deps/nautilus-join.Tpo .deps/nautilus-join.Plo mv -f .deps/cootilus-demo.Tpo .deps/cootilus-demo.Po mv -f .deps/cootilus-build.Tpo .deps/cootilus-build.Plo mv -f .deps/nautilus-target.Tpo .deps/nautilus-target.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcootilus.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread libtool: link: ar cru .libs/libcootilus.a nucleicacid_db.o nautilus-tools.o nautilus-ss-find.o nautilus-join.o nautilus-target.o cootilus-build.o libtool: link: ranlib .libs/libcootilus.a libtool: link: ( cd ".libs" && rm -f "libcootilus.la" && ln -s "../libcootilus.la" "libcootilus.la" ) /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o cootilus-demo cootilus-demo.o ./libcootilus.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -g -O -o cootilus-demo cootilus-demo.o ./.libs/libcootilus.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' Making all in goograph make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O -MT goograph.lo -MD -MP -MF .deps/goograph.Tpo -c -o goograph.lo goograph.cc libtool: compile: g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -g -O -MT goograph.lo -MD -MP -MF .deps/goograph.Tpo -c goograph.cc -o goograph.o mv -f .deps/goograph.Tpo .deps/goograph.Plo /bin/sh ../libtool --tag=CXX --mode=link g++ -g -O -o libcoot-goograph.la -rpath /home/emsley/autobuild/installed-pre-release-gtk2-python/lib goograph.lo ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 libtool: link: ar cru .libs/libcoot-goograph.a goograph.o libtool: link: ranlib .libs/libcoot-goograph.a libtool: link: ( cd ".libs" && rm -f "libcoot-goograph.la" && ln -s "../libcoot-goograph.la" "libcoot-goograph.la" ) make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' Making all in src make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 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-I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o c-interface-ligands.cc mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o c-interface-ligands-gui.cc mv -f .deps/c-interface-kk.Tpo .deps/c-interface-kk.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-maps.o -MD -MP -MF .deps/c-interface-maps.Tpo -c -o c-interface-maps.o c-interface-maps.cc mv -f .deps/c-interface-info.Tpo .deps/c-interface-info.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o c-interface-mmdb.cc mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP 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c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o c-interface-scm.cc mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o c-interface-waters-gui.cc mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread 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-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o c-interface.cc mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT c-interface-test.o -MD -MP -MF .deps/c-interface-test.Tpo -c -o c-interface-test.o c-interface-test.cc mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o callbacks.c mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT coot-colour.o -MD -MP -MF .deps/coot-colour.Tpo -c -o coot-colour.o coot-colour.cc mv -f .deps/coot-colour.Tpo .deps/coot-colour.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 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-DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT coot-glue.o -MD -MP -MF .deps/coot-glue.Tpo -c -o coot-glue.o coot-glue.c mv -f .deps/coot-glue.Tpo .deps/coot-glue.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o coot-glue-gtk2.c mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o coot-glue-gtk2-python.cc mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o coot-hydrogens.cc mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o coot_pythonmodule.cc mv -f .deps/command-line.Tpo .deps/command-line.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT coot_wrap_guile_gtk2.o -MD -MP -MF .deps/coot_wrap_guile_gtk2.Tpo -c -o coot_wrap_guile_gtk2.o coot_wrap_guile_gtk2.cc mv -f .deps/c-interface.Tpo .deps/c-interface.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT geometry-graphs.o -MD -MP -MF .deps/geometry-graphs.Tpo -c -o geometry-graphs.o geometry-graphs.cc mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 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-I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built 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-DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT gtk-manual.o -MD -MP -MF .deps/gtk-manual.Tpo -c -o gtk-manual.o gtk-manual.cc mv -f .deps/graphics-ligand-view.Tpo .deps/graphics-ligand-view.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT gtk-widget-conversion-utils.o -MD -MP -MF .deps/gtk-widget-conversion-utils.Tpo -c -o gtk-widget-conversion-utils.o gtk-widget-conversion-utils.cc mv -f .deps/gtk-widget-conversion-utils.Tpo .deps/gtk-widget-conversion-utils.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT gtk2-interface.o -MD -MP -MF .deps/gtk2-interface.Tpo -c -o gtk2-interface.o gtk2-interface.c mv -f .deps/gtk-manual.Tpo .deps/gtk-manual.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c mv -f .deps/graphics-info-superpose.Tpo .deps/graphics-info-superpose.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/interface.Tpo .deps/interface.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT 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-I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT molecule-class-info-ncs.o -MD -MP -MF .deps/molecule-class-info-ncs.Tpo -c -o molecule-class-info-ncs.o molecule-class-info-ncs.cc mv -f .deps/molecule-class-info-kk.Tpo .deps/molecule-class-info-kk.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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.deps/molecule-class-info-surface.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT nsv.o -MD -MP -MF .deps/nsv.Tpo -c -o nsv.o nsv.cc mv -f .deps/molecule-class-info-other.Tpo .deps/molecule-class-info-other.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P 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-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT pick.o -MD -MP -MF .deps/pick.Tpo -c -o pick.o pick.cc mv -f .deps/molecule-class-info-widget-work.Tpo .deps/molecule-class-info-widget-work.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT probe-clash-score.o -MD -MP -MF .deps/probe-clash-score.Tpo -c -o probe-clash-score.o probe-clash-score.cc mv -f .deps/nsv.Tpo .deps/nsv.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT protein_db-interface.o -MD -MP -MF .deps/protein_db-interface.Tpo -c -o protein_db-interface.o protein_db-interface.cc mv -f .deps/probe-clash-score.Tpo .deps/probe-clash-score.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT read-phs.o -MD -MP -MF .deps/read-phs.Tpo -c -o read-phs.o read-phs.c mv -f .deps/protein_db-interface.Tpo .deps/protein_db-interface.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT read-cif.o -MD -MP -MF .deps/read-cif.Tpo -c -o read-cif.o read-cif.c mv -f .deps/read-phs.Tpo .deps/read-phs.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT rama_mousey.o -MD -MP -MF .deps/rama_mousey.Tpo -c -o rama_mousey.o rama_mousey.cc mv -f .deps/read-cif.Tpo .deps/read-cif.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 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-DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT rama_plot.o -MD -MP -MF .deps/rama_plot.Tpo -c -o rama_plot.o rama_plot.cc mv -f .deps/rama_mousey.Tpo .deps/rama_mousey.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT restraints-editor.o -MD -MP -MF .deps/restraints-editor.Tpo -c -o restraints-editor.o restraints-editor.cc mv -f .deps/pick.Tpo .deps/pick.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT sdf-interface.o -MD -MP -MF .deps/sdf-interface.Tpo -c -o sdf-interface.o sdf-interface.cc mv -f .deps/sdf-interface.Tpo .deps/sdf-interface.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.c mv -f .deps/support.Tpo .deps/support.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_MMDB_IGNORE_HASH -DHAVE_MMDB_WITH_CISPEP -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 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-DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -MT testing-2.o -MD -MP -MF .deps/testing-2.Tpo -c -o testing-2.o testing-2.cc mv -f .deps/rama_plot.Tpo .deps/rama_plot.Po gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/libglade-2.0 -DHAVE_GOOCANVAS -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/goocanvas-1.0 -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 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-I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c mv -f .deps/trackball.Tpo .deps/trackball.Po g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 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-I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 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-L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-red-hat-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o density-score-by-residue-real density-score-by-residue-src.o ../geometry/.libs/libcoot-geometry.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -pthread -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib mv -f .deps/align.Tpo .deps/align.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/libcoot-ligand.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o test-coot-align align.o coot-align.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-red-hat-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o test-coot-align align.o coot-align.o ../geometry/.libs/libcoot-geometry.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -pthread -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o test-cholesky test-chol.o gl-matrix.o ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../geometry/libcoot-geometry.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-red-hat-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/.libs/libcoot-ligand.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main/.libs/libcoot-db-main.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils/.libs/libccp4mg-utils.a ../db-main/.libs/libcoot-db-main.a ../ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -lm -pthread -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-red-hat-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o test-cholesky test-chol.o gl-matrix.o ../coords/.libs/libcoot-coords.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a ../geometry/.libs/libcoot-geometry.a ../lidia-core/.libs/libcoot-lidia-core.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so -lz -lpthread /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm -pthread -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib mv -f .deps/testing.Tpo .deps/testing.Po mv -f .deps/coot_wrap_python_gtk2.Tpo .deps/coot_wrap_python_gtk2.Po /bin/sh ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/emsley/autobuild/installed-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-red-hat-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../goograph/libcoot-goograph.la ../libgtkgraph/libcoot-gtkgraph.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libguilegtk-2.0.la -P -pthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lguile -lltdl -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgmp -lcrypt -lm -lltdl -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lssm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -lmmdb -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/python2.7/config -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker -export-dynamic -ldl -lutil -Wl,--export-dynamic -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lglut -L/usr/X11R6/lib64 -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -lcurl -lglade-2.0 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/emsley/autobuild/installed-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-red-hat-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: Paul Emsley build-host: garib-pc-1.lmb.internal on: Fri 13 Sep 0440.03 BST 2013\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -I/home/emsley/autobuild/installed-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -o coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -P -pthread -Wl,-export-dynamic -Wl,--export-dynamic ../lbg/.libs/libcoot-lidia.a -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib64 -L/home/emsley/autobuild/installed-pre-release-gtk2-python -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib ../ligand/.libs/libcoot-ligand.a ../lidia-core/.libs/libcoot-lidia-core.a ../goograph/.libs/libcoot-goograph.a ../libgtkgraph/.libs/libcoot-gtkgraph.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles/.libs/libcoot-AngleInfo.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand/.libs/libcoot-ligand.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main/.libs/libcoot-db-main.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils/.libs/libccp4mg-utils.a ../ideal/.libs/libcoot-ideal.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-surface/.libs/libcoot-surface.a -L/usr/X11R6/lib -L/usr/X11R6/lib64 /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface/.libs/libccp4mg-surface.a ../surface/.libs/libccp4mg-surface.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry/.libs/libcoot-geometry.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.a /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils/.libs/libcoot-utils.a ../protein_db/.libs/libcoot-protein-db.a ../cootilus/.libs/libcootilus.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libguilegtk-2.0.so -lgthread-2.0 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libguile.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgmp.so -lcrypt /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libltdl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cif.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-phs.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-contrib.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-minimol.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-cns.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libclipper-core.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4c.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/librfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libfftw.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libssm.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libmmdb.so -L/home/emsley/autobuild/installed-pre-release-gtk2-python/lib/python2.7/config -lpthread -lpython2.7 -lutil /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgtkglext-x11-1.0.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgdkglext-x11-1.0.so -lXmu -lXt -lSM -lICE -lpangox-1.0 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libglut.so /usr/lib64/libGL.so -lGLU -lXext -lX11 -lXxf86vm -lgnomecanvas-2 -lart_lgpl_2 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgsl.so /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgslcblas.so -lm /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcurl.so -L/usr/lib6464 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libidn.so -lrt -lssl -lcrypto -ldl -lz -lglade-2.0 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lgmodule-2.0 -lglib-2.0 -pthread -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/emsley/autobuild/installed-pre-release-gtk2-python/lib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libpython2.7.a(posixmodule.o): In function `posix_tmpnam': /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-07-31__T14_01_18/Python-2.7.5/./Modules/posixmodule.c:7515: warning: the use of `tmpnam_r' is dangerous, better use `mkstemp' /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libpython2.7.a(posixmodule.o): In function `posix_tempnam': /home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-07-31__T14_01_18/Python-2.7.5/./Modules/posixmodule.c:7462: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' Making all in data make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' Making all in rama-data make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' Making all in doc make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' Making all in rcrane make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' Making all in pixmaps make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre' sed -e 's/#GTK2 //' ./cootrc.template > cootrc make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre' 1 --------------------------------------------------------------- make install 1 ---------------------------------------------------------------- Making install in auxil make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' Making install in catcheck make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/catcheck' Making install in rama make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/rama' Making install in sec-str make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/sec-str' Making install in strand-analysis make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/strand-analysis' Making install in vectors make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil/vectors' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[3]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/auxil' Making install in scheme make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/scheme" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/scheme" /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm prodrg-import.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/scheme' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/scheme' Making install in python make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python" /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py prodrg_import.py get_recent_pdbe.py jligand.py jligand_gui.py redefine_functions.py user_define_restraints.py '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python' /usr/bin/install -c -m 644 coot_toolbuttons.py rcrane_loader.py '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python' Making install in pdb-templates make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb theor-helix-70.pdb '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pdb-templates' Making install in macros make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/macros' Making install in compat make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/compat" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/compat" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 coot-getopt.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/compat' libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-compat.la libtool: install: /usr/bin/install -c .libs/libcoot-compat.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-compat.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-compat.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-compat.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/compat' Making install in utils make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/utils" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/utils" /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/utils' /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-utils.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-utils.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-utils.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/utils' Making install in protein_db make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/protein_db" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/protein_db" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/protein_db" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/protein_db" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/protein_db' /usr/bin/install -c -m 644 protein.db '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/protein_db' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-protein-db.la libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/protein_db' Making install in mini-mol make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/mini-mol" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/mini-mol" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/mini-mol' libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-mini-mol.la libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/mini-mol' Making install in geometry make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/geometry" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/geometry" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/geometry' libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-geometry.la libtool: install: /usr/bin/install -c .libs/libcoot-geometry.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/geometry' Making install in coot-utils make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coot-utils" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coot-utils" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-shelx.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coot-utils' libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-shelx.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-shelx.la libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-extras.la libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-heavy.la libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: /usr/bin/install -c .libs/libcoot-shelx.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-utils' Making install in surface make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" make[2]: Nothing to be done for `install-data-am'. /bin/sh ../libtool --mode=install /usr/bin/install -c libccp4mg-surface.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libccp4mg-surface.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-surface.la libtool: install: /usr/bin/install -c .libs/libccp4mg-surface.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-surface.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-surface.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-surface.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/surface' Making install in coot-surface make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" make[2]: Nothing to be done for `install-data-am'. /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-surface.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-surface.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-surface.la libtool: install: /usr/bin/install -c .libs/libcoot-surface.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-surface.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-surface.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-surface.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coot-surface' Making install in lidia-core make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lidia-core" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lidia-core" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lidia-core' libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia-core.la libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lidia-core' Making install in coords make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coords" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coords" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/coords' libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coords.la libtool: install: /usr/bin/install -c .libs/libcoot-coords.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coords.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coords.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-coords.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/coords' Making install in angles make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/angles" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/angles" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/angles' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-AngleInfo.la libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/angles' Making install in skeleton make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/skeleton' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/skeleton' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/skeleton" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/skeleton" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/skeleton' libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-skeleton.la libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/skeleton' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/skeleton' Making install in ccp4mg-utils make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ccp4mg-utils" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ccp4mg-utils" /bin/sh ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ccp4mg-utils' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-utils.la libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ccp4mg-utils' Making install in density-contour make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/density-contour" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/density-contour" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/density-contour' libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-isosurface.la libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/density-contour' Making install in db-main make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/db-main" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/db-main" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/db-main' libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-db-main.la libtool: install: /usr/bin/install -c .libs/libcoot-db-main.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/db-main' Making install in ideal make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ideal" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ideal" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ideal' libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ideal.la libtool: install: /usr/bin/install -c .libs/libcoot-ideal.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c mini-rsr '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c mini-rsr /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/mini-rsr make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ideal' Making install in ligand make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ligand" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ligand" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c findwaters findligand '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/ligand' libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ligand.la libtool: install: /usr/bin/install -c .libs/libcoot-ligand.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c findligand-real findwaters-real '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c findligand-real /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/findligand-real libtool: install: /usr/bin/install -c findwaters-real /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/findwaters-real make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/ligand' Making install in high-res make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/high-res" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/high-res" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/high-res' libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-high-res.la libtool: install: /usr/bin/install -c .libs/libcoot-high-res.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/high-res' Making install in build make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/build" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/build" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 CalphaBuild.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/build' libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-cabuild.la libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/build' Making install in greg-tests make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/greg-tests' Making install in python-tests make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/python-tests' Making install in analysis make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/analysis" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/analysis" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/analysis' libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-analysis.la libtool: install: /usr/bin/install -c .libs/libcoot-analysis.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c bfactan '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c bfactan /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/bfactan make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/analysis' Making install in tw make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/tw" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/tw" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-tw.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 coot-tw.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/tw' libtool: install: /usr/bin/install -c .libs/libcoot-tw.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-tw.la libtool: install: /usr/bin/install -c .libs/libcoot-tw.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-tw.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-tw.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-tw.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/tw' Making install in libgtkgraph make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" make[2]: Nothing to be done for `install-data-am'. /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-gtkgraph.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-gtkgraph.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-gtkgraph.la libtool: install: /usr/bin/install -c .libs/libcoot-gtkgraph.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/libgtkgraph' Making install in lbg make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lbg" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lbg" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-lidia.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg Trash-hydrogens-Andy_Trash_Can.svg face-smile.svg 05_Hotel_Icon_Hair_Salon.svg '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 lbg.hh wmolecule.hh flev-annotations.hh graphics-c-interface-functions.hh lbg-drag-and-drop.hh qed-interface.hh alerts.hh '/home/emsley/autobuild/installed-pre-release-gtk2-python/include/coot/lbg' /usr/bin/install -c -m 644 lbg.glade lbg-callbacks.cc '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot' libtool: install: /usr/bin/install -c .libs/libcoot-lidia.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia.la libtool: install: /usr/bin/install -c .libs/libcoot-lidia.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" /bin/sh ../libtool --mode=install /usr/bin/install -c lidia '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c lidia /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/lidia make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/lbg' Making install in cootaneer make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" /bin/sh ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot' libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootaneer.la libtool: install: /usr/bin/install -c .libs/libcootaneer.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootaneer.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootaneer.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootaneer.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootaneer' Making install in cootilus make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" /bin/sh ../libtool --mode=install /usr/bin/install -c libcootilus.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' /usr/bin/install -c -m 644 nautilus_lib.pdb '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot' libtool: install: /usr/bin/install -c .libs/libcootilus.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootilus.la libtool: install: /usr/bin/install -c .libs/libcootilus.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootilus.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootilus.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcootilus.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/cootilus' Making install in goograph make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/lib" make[2]: Nothing to be done for `install-data-am'. /bin/sh ../libtool --mode=install /usr/bin/install -c libcoot-goograph.la '/home/emsley/autobuild/installed-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-goograph.lai /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-goograph.la libtool: install: /usr/bin/install -c .libs/libcoot-goograph.a /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: install: chmod 644 /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: install: ranlib /home/emsley/autobuild/installed-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: finish: PATH="/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2-python/bin:/home/emsley/autobuild/installed-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/emsley/ccp4/ccp4-6.3.0/bin:/home/emsley/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/emsley/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/emsley/autobuild/installed-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/emsley/autobuild/installed-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/goograph' Making install in src make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/bin" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python" /bin/sh ../libtool --mode=install /usr/bin/install -c coot-real density-score-by-residue-real fix-nomenclature-errors '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' /usr/bin/install -c coot density-score-by-residue '/home/emsley/autobuild/installed-pre-release-gtk2-python/bin' /usr/bin/install -c coot.py '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python' libtool: install: /usr/bin/install -c coot-real /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/coot-real libtool: install: /usr/bin/install -c density-score-by-residue-real /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/density-score-by-residue-real libtool: install: /usr/bin/install -c fix-nomenclature-errors /home/emsley/autobuild/installed-pre-release-gtk2-python/bin/fix-nomenclature-errors make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/src' Making install in data make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/data" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/data" /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/data' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/data' Making install in rama-data make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/rama-data" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/rama-data" /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/rama-data' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rama-data' Making install in doc make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/doc' Making install in rcrane make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane" test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane/data" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane/data" /usr/bin/install -c -m 644 CHANGELOG.txt buildPhosOxy.py installRCrane.py pseudoMolecule.py selectMapDialog.py LICENSE.txt calcCoords.py launch.py pseudoPredictor.py settings.py chain.py linearInterp.py puckerList.py smoothProb.py NOTICE.txt citationPopup.py logo.svg reviewSuitesGui.py stats.py README.txt coot_gui_adapter.py menu.py revisionNum.py strucCalc.py __init__.py coot_utils_adapter.py nextPhos.py rotData.py suite.py about.py nucleotide.py rotamerSeq.py thetaEtaPredictor.py bondLength.py guiUtils.py phenixRestraints.py rotamerize.py traceGui.py buildInitSugar.py icon.svg '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane' /usr/bin/install -c -m 644 data/bases.pdb data/phosAngleSmoothed.csv data/sugarDists.csv data/c2p.pdb data/phosDistSmoothed.csv data/sugarPhosSugarAngleSmoothed.csv data/c3p.pdb data/pseudoChiSmoothed.csv data/thetaEtaClusts.csv data/dihedData.csv data/smoothedPuckerDist.csv data/endingPDists.csv data/startingPDists.csv '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane/data' /usr/bin/install -c -m 644 preLaunchCheck.py safelog.py extendChain.py reportInputErrors.py '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/python/rcrane' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/rcrane' Making install in pixmaps make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps" /usr/bin/install -c -m 644 coot-0.8-pre.png add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 azerbaijan2.svg ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png chiral.png go-to-ligand.svg rtz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg kevin-orig.jpg smiles.png '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png pointer-distances.png water-drop.svg '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 display-manager.svg pointer-distances.svg '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot/pixmaps' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre/pixmaps' make[1]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre' make[2]: Entering directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk syminfo.lib '/home/emsley/autobuild/installed-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre' make[1]: Leaving directory `/home/emsley/autobuild/building/garib-pc-1.lmb.internal_2013-09-13__T03_40_01/coot-0.8-pre'