building ========================= rdkit ============================== ==================== LD_LIBRARY_PATH is /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib::/public/ImageMagick/latest/lib testing for existance of /netscr/pemsley/autobuild/sources/rdkit-Release_2018_09_3.tar.gz found the file /netscr/pemsley/autobuild/sources/rdkit-Release_2018_09_3.tar.gz stat --format=%s /netscr/pemsley/autobuild/sources/rdkit-Release_2018_09_3.tar.gz 54644917 rdkit tar /netscr/pemsley/autobuild/sources/rdkit-Release_2018_09_3.tar.gz size: 54644917 here C with get_the_rdkit_tar_file false tar xf /netscr/pemsley/autobuild/sources/rdkit-Release_2018_09_3.tar.gz /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46 Pillow-6.2.2 rdkit-Release_2018_09_3 /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/build which cmake /lmb/home/pemsley/cmake/bin/cmake will configure with cmake like this: cmake -DRDK_INSTALL_INTREE=0 -DPYTHON_EXECUTABLE=/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin/python -DPYTHON_LIBRARY=/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libpython2.7.so -DPYTHON_INCLUDE_DIR=/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/python2.7 -DRDK_BUILD_CAIRO_SUPPORT=ON -DRDK_TEST_MULTITHREADED=OFF -DRDK_BUILD_THREADSAFE_SSS=OFF -DRDK_BUILD_INCHI_SUPPORT=OFF -DCMAKE_INSTALL_PREFIX=/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python .. -- The C compiler identification is GNU 4.8.5 -- The CXX compiler identification is GNU 4.8.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Downloading https://github.com/catchorg/Catch2/archive/v2.1.2.tar.gz... CATCH: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/External/catch/catch/single_include -- Found PythonInterp: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin/python (found version "2.7.18") -- Found PythonLibs: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libpython2.7.so (found version "2.7.18") Python Install directory /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -Wl,--rpath=/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Eigen3 not found, disabling the Descriptors3D build. -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Found Boost: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/cmake/Boost-1.71.0/BoostConfig.cmake (found suitable version "1.71.0", minimum required is "1.56.0") found components: serialization == Using strict rotor definition Downloading https://github.com/schrodinger/maeparser/archive/v1.0.1.tar.gz... Downloading https://github.com/schrodinger/coordgenlibs/archive/v1.1.tar.gz... == Updating Filters.cpp from pains file == Done updating pains files -- Found PkgConfig: /bin/pkg-config (found version "0.27.1") -- Checking for module 'cairo' -- Found cairo, version 1.15.12 -- Found Cairo: /usr/include/cairo Downloading https://github.com/Tencent/rapidjson/archive/v1.1.0.tar.gz... Skipping SLN build with gcc version <= 4.8 -- Configuring done -- Generating done -- Build files have been written to: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/build [ 0%] Built target coordgen_support [ 0%] Built target catch [ 0%] Built target inchi_support [ 0%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Buffer.cpp.o [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hc.c.o [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Invariant.cpp.o [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser_static.dir/maeparser/Buffer.cpp.o [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc_static.dir/hcdriver.c.o [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o [ 1%] Linking C static library libRDKithc_static.a [ 1%] Linking C shared library ../../../../lib/libRDKithc.so [ 1%] Built target hc_static [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeBlock.cpp.o [ 1%] Built target hc [ 1%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o [ 1%] Building CXX object External/CoordGen/CMakeFiles/maeparser_static.dir/maeparser/MaeBlock.cpp.o [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/MaeParser.cpp.o [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser_static.dir/maeparser/MaeParser.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/types.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/utils.cpp.o [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser.dir/maeparser/Reader.cpp.o [ 2%] Building CXX object External/CoordGen/CMakeFiles/maeparser_static.dir/maeparser/Reader.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/RDLog.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/Dict.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/LocaleSwitcher.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral_static.dir/versions.cpp.o [ 3%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so [ 3%] Built target RDGeneral [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o [ 3%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o [ 3%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o [ 3%] Linking CXX static library libRDKitRDGeneral_static.a [ 3%] Built target RDGeneral_static [ 3%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/BitVect.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/testRDValue.cpp:5: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseBitVect.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 3%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o [ 4%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so [ 4%] Built target EigenSolvers [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o [ 4%] Linking CXX shared library ../../lib/libRDKitmaeparser.so [ 4%] Built target maeparser [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o [ 4%] Linking CXX executable testRDValue [ 4%] Linking CXX static library libRDKitmaeparser_static.a In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/ExplicitBitVect.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 4%] Built target testRDValue [ 4%] Built target maeparser_static [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o [ 5%] Linking CXX shared library ../../lib/libRDKitRDBoost.so [ 5%] Built target RDBoost [ 5%] Linking CXX executable testDict [ 5%] Linking CXX executable testMatrices [ 5%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers_static.dir/PowerEigenSolver.cpp.o [ 5%] Built target testMatrices [ 5%] Built target testDict [ 5%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/Catalog.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/BitOps.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/DiscreteValueVect.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/FPBReader.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 5%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogParams.cpp.o [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o [ 6%] Linking CXX static library libRDKitEigenSolvers_static.a In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 6%] Built target EigenSolvers_static [ 6%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs_static.dir/CatalogEntry.cpp.o [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/DistPicker.cpp.o [ 6%] Linking CXX shared library ../../lib/libRDKitDataStructs.so [ 6%] Built target DataStructs [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o [ 6%] Linking CXX static library libRDKitCatalogs_static.a [ 6%] Linking CXX shared library ../../lib/libRDKitCatalogs.so [ 6%] Built target Catalogs_static [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/MaxMinPicker.cpp.o [ 6%] Linking CXX executable testMatCalc [ 6%] Built target Catalogs [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers_static.dir/HierarchicalClusterPicker.cpp.o [ 7%] Built target testMatCalc [ 7%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o [ 7%] Linking CXX executable testQuery [ 7%] Built target testQuery [ 7%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o [ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so [ 7%] Built target SimDivPickers [ 7%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o [ 7%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost_static.dir/Wrap.cpp.o [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmentBuilder.cpp.o [ 7%] Linking CXX static library libRDKitSimDivPickers_static.a [ 7%] Built target SimDivPickers_static [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/CoordgenFragmenter.cpp.o [ 7%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o [ 7%] Built target InfoTheory [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenFragmenter.cpp.o [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o [ 7%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMacrocycleBuilder.cpp.o [ 7%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o [ 8%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/CoordgenMinimizer.cpp.o [ 9%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so [ 9%] Built target Clustering [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/CoordgenMinimizer.cpp.o [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizer.cpp.o [ 9%] Linking CXX static library libRDKitRDBoost_static.a [ 9%] Built target RDBoost_static [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitVect.cpp.o [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizer.cpp.o [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/SparseBitVect.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/BitVect.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerAtom.cpp.o [ 9%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Geometry/UniformGrid3D.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseBitVect.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerBond.cpp.o [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/ExplicitBitVect.cpp.o [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerBond.cpp.o [ 9%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o [ 9%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o [ 10%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerFragment.cpp.o [ 10%] Built target RDGeometryLib [ 10%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/Utils.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/ExplicitBitVect.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/testDatastructs.cpp:26: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 10%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidue.cpp.o [ 11%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerMarchingSquares.cpp.o [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/base64.cpp.o [ 11%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o [ 11%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/BitOps.cpp.o [ 12%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteDistMat.cpp.o [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o [ 12%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib.dir/coordgenlibs/sketcherMinimizerRing.cpp.o [ 13%] Linking CXX shared library ../../lib/libRDKitcoordgenlib.so [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerMolecule.cpp.o [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerResidue.cpp.o [ 13%] Built target coordgenlib [ 13%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o [ 13%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/DiscreteValueVect.cpp.o [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerResidueInteraction.cpp.o [ 13%] Building CXX object External/CoordGen/CMakeFiles/coordgenlib_static.dir/coordgenlibs/sketcherMinimizerRing.cpp.o [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/BitOps.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 13%] Linking CXX static library libRDKitcoordgenlib_static.a [ 13%] Built target coordgenlib_static [ 13%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/FPBReader.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/DiscreteValueVect.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 13%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs_static.dir/MultiFPBReader.cpp.o [ 13%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/FPBReader.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 13%] Linking CXX executable testFPB [ 13%] Built target testFPB [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o [ 13%] Linking CXX executable testDataStructs [ 13%] Built target testDataStructs [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o [ 13%] Linking CXX executable testMultiFPB [ 13%] Built target testMultiFPB [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o [ 13%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o [ 13%] Linking CXX static library libRDKitDataStructs_static.a [ 13%] Built target DataStructs_static [ 13%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/Wrap/DataStructs.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 13%] Linking CXX executable testTransforms [ 13%] Built target testTransforms [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o [ 13%] Linking CXX shared module ../../../rdkit/rdBase.so [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o [ 14%] Built target rdBase [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o [ 14%] Linking CXX executable testGrid [ 14%] Built target testGrid [ 14%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/Wrap/SparseIntVect.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o [ 14%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o [ 15%] Linking CXX executable testSimDivPickers [ 15%] Built target testSimDivPickers [ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o [ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o [ 17%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so [ 17%] Built target rdMetricMatrixCalc [ 17%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o [ 17%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory_static.dir/InfoBitRanker.cpp.o [ 18%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o [ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o [ 18%] Linking CXX static library libRDKitInfoTheory_static.a [ 18%] Built target InfoTheory_static [ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o [ 18%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o [ 18%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so [ 18%] Built target cDataStructs [ 18%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o [ 18%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so [ 18%] Built target rdGeometry [ 18%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ChemicalFeatures/FreeChemicalFeature.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 18%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so [ 18%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so [ 18%] Built target ChemicalFeatures [ 18%] Built target rdSimDivPickers [ 18%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/point.cpp.o [ 18%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o [ 18%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o [ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o [ 19%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so [ 19%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform2D.cpp.o [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o [ 19%] Built target cQuantize [ 19%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/Transform3D.cpp.o [ 19%] Linking CXX executable testChemicalFeatures [ 19%] Linking CXX shared library ../../../lib/libRDKitAlignment.so [ 19%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/UniformGrid3D.cpp.o [ 19%] Built target testChemicalFeatures [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o [ 19%] Built target Alignment [ 19%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib_static.dir/GridUtils.cpp.o [ 19%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so [ 19%] Built target rdInfoTheory [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Geometry/UniformGrid3D.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o [ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o [ 19%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o [ 19%] Linking CXX static library libRDKitRDGeometryLib_static.a [ 19%] Built target RDGeometryLib_static [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o [ 20%] Linking CXX executable testAlignment [ 20%] Built target testAlignment [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o [ 20%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment_static.dir/AlignPoints.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Atom.cpp.o [ 20%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so [ 20%] Built target rdAlignment [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryAtom.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolPickler.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 20%] Linking CXX static library libRDKitAlignment_static.a [ 20%] Built target Alignment_static [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o [ 21%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures_static.dir/FreeChemicalFeature.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryBond.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ChemicalFeatures/FreeChemicalFeature.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o [ 21%] Linking CXX static library libRDKitChemicalFeatures_static.a [ 21%] Built target ChemicalFeatures_static [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Bond.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolOps.cpp.o [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/FindRings.cpp.o [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ROMol.cpp.o [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RWMol.cpp.o [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/PeriodicTable.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/atomic_data.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/QueryOps.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolPickler.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Canon.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AtomIterators.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/BondIterators.cpp.o [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Aromaticity.cpp.o [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Kekulize.cpp.o [ 24%] Linking CXX shared library ../../lib/libRDKitGraphMol.so [ 24%] Built target GraphMol [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/MolDiscriminators.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolPickler.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/ConjugHybrid.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AddHs.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Matrices.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Chirality.cpp.o [ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/RingInfo.cpp.o [ 25%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o [ 25%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so [ 25%] Built target Trajectory [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Conformer.cpp.o [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Renumber.cpp.o [ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/AdjustQuery.cpp.o [ 26%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so [ 26%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so [ 26%] Built target SubstructMatch [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o [ 26%] Built target MolTransforms [ 26%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o [ 26%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/Resonance.cpp.o [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o [ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o [ 26%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so [ 26%] Built target PartialCharges [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/StereoGroup.cpp.o [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o [ 26%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol_static.dir/new_canon.cpp.o [ 26%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o [ 26%] Built target Subgraphs [ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 26%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o smarts.yy:24:1: warning: unused parameter ‘input’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘ms’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o [ 26%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so [ 26%] Built target MolCatalog [ 26%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o smiles.yy:37:1: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] [ 27%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o [ 27%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o [ 27%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o [ 27%] Linking CXX static library libRDKitGraphMol_static.a [ 27%] Built target GraphMol_static [ 27%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o [ 28%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o [ 28%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so [ 28%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o [ 28%] Built target SmilesParse [ 29%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o [ 29%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory_static.dir/Trajectory.cpp.o [ 29%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so [ 29%] Built target MolInterchange [ 29%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParse.cpp.o [ 29%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructMatch.cpp.o [ 29%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so [ 29%] Built target Optimizer [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesParseOps.cpp.o [ 29%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch_static.dir/SubstructUtils.cpp.o [ 29%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so [ 29%] Built target rdtrajectory [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmilesWrite.cpp.o [ 29%] Linking CXX static library libRDKitTrajectory_static.a [ 29%] Built target Trajectory_static [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/SmartsWrite.cpp.o [ 29%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so [ 29%] Built target rdqueries [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/CXSmilesOps.cpp.o [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smarts.tab.cpp.o [ 30%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o [ 30%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so [ 30%] Built target rdChemicalFeatures [ 30%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o [ 30%] Linking CXX static library libRDKitSubstructMatch_static.a [ 30%] Built target SubstructMatch_static [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/smiles.tab.cpp.o [ 30%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o [ 30%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o [ 30%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o smarts.yy:24:1: warning: unused parameter ‘input’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘ms’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smarts.yy:24:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘lastAtom’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘lastBond’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:37:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘input’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘branchPoints’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘scanner’ [-Wunused-parameter] smiles.yy:49:1: warning: unused parameter ‘start_token’ [-Wunused-parameter] [ 30%] Linking CXX executable graphmoltestCanon [ 30%] Built target graphmoltestCanon [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmarts.cpp.o [ 31%] Linking CXX executable graphmolIterTest [ 31%] Built target graphmolIterTest [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse_static.dir/lex.yysmiles.cpp.o [ 31%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o [ 31%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms_static.dir/MolTransforms.cpp.o [ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o [ 31%] Linking CXX executable graphmolcpTest [ 31%] Built target graphmolcpTest [ 31%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o [ 31%] Linking CXX executable test-valgrind [ 31%] Built target test-valgrind [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp:29: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 31%] Linking CXX executable graphmolMemTest1 In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:26: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 31%] Built target graphmolMemTest1 [ 31%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o [ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o [ 31%] Linking CXX static library libRDKitSmilesParse_static.a [ 31%] Built target SmilesParse_static [ 31%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o [ 31%] Linking CXX static library libRDKitMolTransforms_static.a [ 31%] Built target MolTransforms_static [ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o [ 31%] Linking CXX executable graphmolqueryTest [ 31%] Built target graphmolqueryTest [ 31%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.h:37, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 31%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o [ 32%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so [ 32%] Built target ChemTransforms [ 32%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 32%] Linking CXX executable smiTest2 [ 32%] Built target smiTest2 [ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o [ 32%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o [ 32%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/ChemTransforms.cpp.o [ 33%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/Subgraphs.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.h:37, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganFingerprints.h:46, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp:37: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 33%] Linking CXX executable smaTest1 [ 33%] Built target smaTest1 [ 33%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms_static.dir/MolFragmenter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp:33: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 34%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemTransforms/ChemTransforms.cpp:29: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 34%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs_static.dir/SubgraphUtils.cpp.o [ 35%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerCharges.cpp.o [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o [ 35%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemTransforms/MolFragmenter.cpp:26: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 35%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 35%] Built target FilterCatalog [ 35%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges_static.dir/GasteigerParams.cpp.o [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o [ 35%] Linking CXX static library libRDKitSubgraphs_static.a [ 35%] Built target Subgraphs_static [ 35%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o [ 35%] Linking CXX static library libRDKitChemTransforms_static.a [ 35%] Built target ChemTransforms_static [ 35%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o [ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o [ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogUtils.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 35%] Linking CXX executable testSubgraphs1 [ 35%] Linking CXX static library libRDKitPartialCharges_static.a [ 35%] Built target testSubgraphs1 [ 35%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o [ 35%] Built target PartialCharges_static [ 36%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] AtomPairEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] OutputType AtomPairAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:369:35: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] FingerprintGenerator *getMorganGenerator( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:418:57: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:369:35: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] MorganEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 36%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatGenerator.cpp.o [ 36%] Linking CXX executable testSubgraphs2 /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType MorganAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o [ 37%] Built target testSubgraphs2 [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatalogEntry.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 37%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o [ 37%] Linking CXX executable testPartialCharges [ 37%] Built target testPartialCharges [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragCatParams.cpp.o [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog_static.dir/FragFPGenerator.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 37%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 37%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragFPGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 37%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o [ 37%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] RDKitFPEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType RDKitFPAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 37%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o [ 37%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeature.cpp.o [ 38%] Linking CXX static library libRDKitFragCatalog_static.a [ 38%] Built target FragCatalog_static [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o [ 38%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so [ 38%] Built target FragCatalog [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureDef.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintUtil.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintUtil.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11:0: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:163:17: required from ‘RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:183:58: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:26:18: warning: ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::d_torsionAtomCount’ will be initialized after [-Wreorder] const uint32_t d_torsionAtomCount; ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:27:76: warning: base ‘RDKit::FingerprintArguments’ [-Wreorder] FingerprintArguments(countSimulation, countBounds, fpSize){}; ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:186:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘confId’ [-Wunused-parameter] TopologicalTorsionEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘OutputType RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:186:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType TopologicalTorsionAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 38%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o [ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o [ 39%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/MolChemicalFeatureFactory.cpp.o [ 39%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so [ 40%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeEncoder.cpp.o [ 40%] Built target Fingerprints [ 40%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o [ 40%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers_static.dir/ShapeUtils.cpp.o [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so [ 41%] Built target rdPartialCharges [ 41%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures_static.dir/FeatureParser.cpp.o [ 41%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 41%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so [ 41%] Built target rdMolTransforms [ 41%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogEntry.cpp.o [ 41%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog_static.dir/MolCatalogParams.cpp.o [ 41%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o [ 41%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs_static.dir/ReducedGraphs.cpp.o [ 41%] Linking CXX static library libRDKitShapeHelpers_static.a [ 41%] Built target ShapeHelpers_static [ 42%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange_static.dir/Parser.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 42%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 42%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so [ 42%] Built target MolChemicalFeatures [ 42%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange_static.dir/Writer.cpp.o [ 42%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so [ 42%] Built target ShapeHelpers [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o [ 42%] Linking CXX static library libRDKitMolChemicalFeatures_static.a [ 42%] Built target MolChemicalFeatures_static [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o [ 42%] Linking CXX static library libRDKitMolCatalog_static.a [ 42%] Built target MolCatalog_static [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o [ 42%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so [ 42%] Linking CXX static library libRDKitReducedGraphs_static.a [ 42%] Built target ReducedGraphs [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o [ 42%] Built target ReducedGraphs_static [ 42%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o [ 42%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o [ 42%] Linking CXX static library libRDKitMolInterchange_static.a [ 42%] Built target MolInterchange_static [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o [ 43%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so [ 43%] Built target rdMolInterchange [ 43%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o [ 43%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o [ 43%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o [ 43%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/BFGSOpt.cpp.o [ 43%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o [ 43%] Linking CXX executable testOptimizer [ 43%] Built target testOptimizer [ 43%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o [ 43%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer_static.dir/LinearSearch.cpp.o [ 43%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o [ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/Filters.cpp.o [ 44%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o [ 45%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/Fingerprints.cpp.o [ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalog.cpp.o [ 45%] Linking CXX static library libRDKitOptimizer_static.a [ 45%] Built target Optimizer_static [ 45%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o [ 45%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/PatternFingerprints.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.h:37, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterCatalogEntry.cpp.o [ 45%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 45%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FilterMatchers.cpp.o [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/PatternFingerprints.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MorganFingerprints.cpp.o [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Filters.h:37, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp:32: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/AtomPairs.cpp.o [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganFingerprints.h:46, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganFingerprints.cpp:37: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function ‘const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:27: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < len; i++) { ^ [ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog_static.dir/FunctionalGroupHierarchy.cpp.o In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17:0: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:21:35: warning: unused parameter ‘includeRingMembership’ [-Wunused-parameter] FingerprintGenerator *getMorganGenerator( ^ In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18:0: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable ‘bondInvariantsGenerator’ [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^ In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19:0: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable ‘bondInvariantsGenerator’ [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^ [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MACCS.cpp.o [ 46%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp:33: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/FingerprintGenerator.cpp.o [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o [ 46%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so [ 46%] Built target rdFingerprintGenerator [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Linking CXX static library libRDKitFilterCatalog_static.a [ 46%] Built target FilterCatalog_static [ 46%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ForceField/UFF/Params.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/AtomPairGenerator.cpp.o [ 46%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/MorganGenerator.cpp.o [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Linking CXX executable testReducedGraphs /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] AtomPairEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] OutputType AtomPairAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of ‘OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:237:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] [ 46%] Built target testReducedGraphs [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o [ 46%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so [ 46%] Built target rdShapeHelpers [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/RDKitFPGenerator.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:369:35: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] FingerprintGenerator *getMorganGenerator( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:418:57: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:369:35: warning: unused parameter ‘ownsBondInvGen’ [-Wunused-parameter] [ 46%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] MorganEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType MorganAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of ‘OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:421:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 46%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o [ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/FingerprintUtil.cpp.o [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] RDKitFPEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘ignoreAtoms’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘confId’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType RDKitFPAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of ‘OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:212:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 47%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints_static.dir/TopologicalTorsionGenerator.cpp.o [ 47%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintUtil.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintUtil.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 47%] Built target rdchem [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/ForceField.cpp.o [ 47%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleBend.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/FingerprintGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 48%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o [ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so [ 49%] Built target rdMolChemicalFeatures [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/BondStretch.cpp.o [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11:0: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long unsigned int; uint32_t = unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:163:17: required from ‘RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:183:58: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:26:18: warning: ‘RDKit::TopologicalTorsion::TopologicalTorsionArguments::d_torsionAtomCount’ will be initialized after [-Wreorder] const uint32_t d_torsionAtomCount; ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:27:76: warning: base ‘RDKit::FingerprintArguments’ [-Wreorder] FingerprintArguments(countSimulation, countBounds, fpSize){}; ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:186:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘confId’ [-Wunused-parameter] TopologicalTorsionEnvGenerator::getEnvironments( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of ‘OutputType RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:186:1: required from here /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘arguments’ [-Wunused-parameter] OutputType TopologicalTorsionAtomEnv::getBitId( ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘atomInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘bondInvariants’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘additionalOutput’ [-Wunused-parameter] /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: warning: unused parameter ‘hashResults’ [-Wunused-parameter] [ 49%] Linking CXX static library libRDKitFingerprints_static.a [ 49%] Built target Fingerprints_static [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Inversion.cpp.o [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Nonbonded.cpp.o [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionAngle.cpp.o [ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so [ 49%] Built target rdReducedGraphs [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o [ 49%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/DistanceConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/AngleConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/TorsionConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/PositionConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/UFF/Params.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleBend.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/BondStretch.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/StretchBend.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ForceField/UFF/Params.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/OopBend.cpp.o [ 50%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/TorsionAngle.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/Nonbonded.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/DistanceConstraint.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/AngleConstraint.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/TorsionConstraint.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/PositionConstraint.cpp.o [ 51%] Building CXX object Code/ForceField/CMakeFiles/ForceField_static.dir/MMFF/Params.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ForceField/MMFF/Params.cpp:21: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/ForceField/MMFF/Params.cpp:21: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 51%] Linking CXX shared library ../../lib/libRDKitForceField.so [ 51%] Built target ForceField [ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o [ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o [ 52%] Linking CXX static library libRDKitForceField_static.a [ 52%] Built target ForceField_static [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/AtomTyper.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/UFF/Builder.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:22: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/MMFF/AtomTyper.cpp.o [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/MMFF/Builder.cpp.o [ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionAngleM6.cpp.o [ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers_static.dir/CrystalFF/TorsionPreferences.cpp.o [ 53%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so [ 53%] Built target ForceFieldHelpers [ 53%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o [ 53%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o [ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o [ 53%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o [ 53%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp:22: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 53%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o [ 54%] Linking CXX static library libRDKitForceFieldHelpers_static.a [ 54%] Built target ForceFieldHelpers_static [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistGeomUtils.cpp.o [ 54%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/AlignMolecules.cpp.o [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/TriangleSmooth.cpp.o [ 54%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign_static.dir/O3AAlignMolecules.cpp.o [ 54%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so [ 54%] Built target DistGeometry [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/DistViolationContrib.cpp.o [ 54%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o [ 54%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry_static.dir/ChiralViolationContrib.cpp.o [ 54%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so [ 54%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o [ 54%] Built target MolAlign [ 54%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o [ 54%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so [ 54%] Built target rdForceFieldHelpers [ 55%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o [ 55%] Linking CXX static library libRDKitDistGeometry_static.a [ 55%] Built target DistGeometry_static [ 55%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o [ 55%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o [ 55%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so [ 55%] Linking CXX executable testDistGeom [ 55%] Built target rdForceField [ 55%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/BoundsMatrixBuilder.cpp.o [ 55%] Built target testDistGeom [ 55%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o [ 56%] Linking CXX static library libRDKitMolAlign_static.a [ 56%] Built target MolAlign_static [ 56%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers_static.dir/Embedder.cpp.o [ 56%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o [ 56%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so [ 56%] Built target DistGeomHelpers [ 56%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/RDDepictor.cpp.o [ 56%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so [ 57%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/EmbeddedFrag.cpp.o [ 57%] Built target DistGeom [ 57%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor_static.dir/DepictUtils.cpp.o [ 57%] Linking CXX static library libRDKitDistGeomHelpers_static.a [ 57%] Built target DistGeomHelpers_static [ 57%] Linking CXX shared library ../../../lib/libRDKitDepictor.so [ 57%] Built target Depictor [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o [ 58%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so [ 58%] Built target rdCoordGen [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/Mol2FileParser.cpp:40: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/MolFileParser.cpp:24: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 58%] Linking CXX static library libRDKitDepictor_static.a [ 58%] Built target Depictor_static [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o [ 58%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/Mol2FileParser.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileParser.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileStereochem.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MolFileWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/Mol2FileParser.cpp:40: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ForwardSDMolSupplier.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/MolFileParser.cpp:24: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDMolSupplier.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SDWriter.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/SDMolSupplier.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 59%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesMolSupplier.cpp.o [ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o [ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/TplFileParser.cpp:20: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 60%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SmilesWriter.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTMolSupplier.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TDTWriter.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileParser.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/TplFileWriter.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBParser.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBWriter.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/PDBSupplier.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/TplFileParser.cpp:20: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/MaeMolSupplier.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/ProximityBonds.cpp.o [ 61%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceParsers.cpp.o [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SequenceWriters.cpp.o [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers_static.dir/SVGParser.cpp.o [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o [ 62%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o [ 62%] Linking CXX static library libRDKitFileParsers_static.a [ 62%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so [ 62%] Built target FileParsers_static [ 62%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA_static.dir/MMPA.cpp.o [ 63%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/Seed.cpp.o [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Crippen.cpp.o [ 63%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/FMCS.cpp.o [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolDescriptors.cpp.o [ 63%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/MaximumCommonSubgraph.cpp.o [ 63%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolSurf.cpp.o [ 63%] Built target FileParsers [ 63%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS_static.dir/SubstructMatchCustom.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Descriptors/Crippen.cpp:20: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Lipinski.cpp.o [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/ConnectivityDescriptors.cpp.o [ 64%] Building CXX object External/CoordGen/CMakeFiles/testCoordGen.dir/test.cpp.o [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MQN.cpp.o [ 64%] Linking CXX static library libRDKitMMPA_static.a [ 64%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o [ 64%] Built target MMPA_static [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Property.cpp.o [ 64%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o [ 64%] Linking CXX static library libRDKitFMCS_static.a [ 64%] Built target FMCS_static [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/AUTOCORR2D.cpp.o [ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o [ 64%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/Data3Ddescriptors.cpp.o [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/MolData3Ddescriptors.cpp.o [ 64%] Linking CXX executable testCoordGen [ 64%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors_static.dir/USRDescriptor.cpp.o [ 64%] Built target testCoordGen [ 64%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o [ 64%] Linking CXX executable testUFFForceField [ 64%] Built target testUFFForceField [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o [ 65%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o [ 66%] Linking CXX executable molBundleTest [ 66%] Built target molBundleTest [ 66%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o [ 66%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o [ 67%] Linking CXX executable testMMFFForceField [ 67%] Built target testMMFFForceField [ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o [ 67%] Linking CXX static library libRDKitDescriptors_static.a [ 67%] Built target Descriptors_static [ 67%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o [ 68%] Linking CXX executable resMolSupplierTest [ 68%] Built target resMolSupplierTest [ 68%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o [ 68%] Linking CXX executable graphmolTest1 [ 68%] Built target graphmolTest1 [ 69%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o [ 69%] Linking CXX executable hanoiTest [ 69%] Linking CXX executable graphmoltestPickler [ 69%] Built target hanoiTest [ 69%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o [ 69%] Built target graphmoltestPickler [ 69%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o [ 69%] Linking CXX executable graphmoltestChirality [ 69%] Linking CXX executable graphmoltestPicklerGlobalSetting [ 69%] Built target graphmoltestChirality [ 70%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o [ 70%] Built target graphmoltestPicklerGlobalSetting [ 70%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o [ 71%] Linking CXX executable testDepictor [ 71%] Built target testDepictor [ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o [ 71%] Linking CXX executable cxsmilesTest [ 71%] Built target cxsmilesTest [ 71%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o [ 71%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so [ 71%] Built target rdDepictor [ 72%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FileParsers/testMolWriter.cpp:21: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 72%] Linking CXX executable graphmolTestsCatch [ 72%] Built target graphmolTestsCatch [ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o [ 73%] Linking CXX executable testTplParser [ 73%] Built target testTplParser [ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o [ 73%] Linking CXX executable testMolWriter [ 73%] Built target testMolWriter [ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o [ 73%] Linking CXX executable smiTest1 [ 73%] Built target smiTest1 [ 73%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o [ 73%] Linking CXX executable graphmolMolOpsTest [ 73%] Built target graphmolMolOpsTest [ 73%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o [ 73%] Linking CXX executable testMol2ToMol [ 73%] Built target testMol2ToMol [ 73%] Linking CXX executable testSequence [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o [ 73%] Built target testSequence [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o [ 74%] Linking CXX executable fileParsersCatchTest [ 74%] Linking CXX executable testExtendedStereoParsing [ 74%] Built target testExtendedStereoParsing [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o [ 74%] Built target fileParsersCatchTest [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Descriptors/Crippen.cpp:20: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 74%] Linking CXX executable smiTestCatch [ 74%] Built target smiTestCatch [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o [ 75%] Linking CXX executable testMolSupplier [ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Reaction.cpp.o [ 75%] Built target testMolSupplier [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o [ 75%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MDLParser.cpp.o [ 75%] Linking CXX executable fileParsersTest1 [ 75%] Built target fileParsersTest1 [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o [ 76%] Linking CXX executable testSubstructMatch [ 76%] Built target testSubstructMatch [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/DaylightParser.cpp.o [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o [ 76%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o [ 76%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/MDLParser.cpp:39: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionPickler.cpp.o [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionWriter.cpp.o [ 76%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionDepict.cpp.o [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o [ 76%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/ReactionPickler.cpp:18: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp:35: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 76%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/test1.cpp:18: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 76%] Linking CXX executable filterCatalogTest [ 76%] Built target filterCatalogTest [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionFingerprints.cpp.o [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o [ 76%] Linking CXX executable testFragCatalog [ 76%] Built target testFragCatalog [ 76%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o [ 76%] Linking CXX executable testChemTransforms [ 76%] Built target testChemTransforms [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/RDKitBase.h:21:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:12: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function ‘void testAtomPairNonSparseBitvector()’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:225:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro ‘TEST_ASSERT’ if (!(expr)) { \ ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:242:65: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro ‘TEST_ASSERT’ if (!(expr)) { \ ^ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function ‘void testBulkFP()’: /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:2388:39: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int i = 0; i < results->size(); i++) { ^ [ 76%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionUtils.cpp.o [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/test1.cpp:18: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp:35: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 76%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so [ 76%] Built target Descriptors [ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/MoleculeParser.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 77%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o [ 77%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o [ 77%] Linking CXX executable testFingerprintGenerators [ 77%] Built target testFingerprintGenerators [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o [ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/ReactionRunner.cpp.o [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragCatGenerator.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/PreprocessRxn.cpp.o [ 77%] Linking CXX executable testMolTransforms [ 77%] Built target testMolTransforms [ 77%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/FragFPGenerator.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp:14: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp:39: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 77%] Linking CXX executable testFingerprints [ 77%] Built target testFingerprints [ 77%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o [ 77%] Linking CXX executable testMMFFForceFieldHelpers [ 77%] Built target testMMFFForceFieldHelpers [ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/SanitizeRxn.cpp.o [ 77%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so [ 77%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o [ 77%] Built target rdfragcatalog [ 77%] Linking CXX executable testUFFForceFieldHelpers [ 77%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/Enumerate.cpp.o [ 77%] Built target testUFFForceFieldHelpers [ 77%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o [ 77%] Linking CXX executable testCrystalForceField [ 77%] Built target testCrystalForceField [ 77%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o [ 78%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so [ 78%] Built target rdfiltercatalog [ 78%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 78%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o [ 78%] Linking CXX executable testMolAlign [ 78%] Built target testMolAlign [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EnumerationPickler.cpp.o [ 78%] Linking CXX executable testDistGeomHelpers [ 78%] Linking CXX executable testShapeHelpers [ 78%] Built target testDistGeomHelpers [ 78%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions_static.dir/Enumerate/EvenSamplePairs.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/MolCatalog.h:9, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/test1.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 78%] Built target testShapeHelpers [ 78%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o [ 79%] Linking CXX executable testFeatures [ 79%] Built target testFeatures [ 79%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o [ 79%] Linking CXX executable testMolCatalog [ 79%] Built target testMolCatalog [ 79%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o [ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so [ 80%] Built target rdMolAlign [ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/MolHash.cpp.o [ 80%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so [ 80%] Built target rdDistGeom [ 80%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o [ 80%] Linking CXX static library libRDKitChemReactions_static.a [ 80%] Built target ChemReactions_static [ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/MolCatalog.h:9, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp:8: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 80%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash_static.dir/HashToString.cpp.o [ 81%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructChecker.cpp.o [ 81%] Linking CXX shared library ../../../lib/libRDKitMolHash.so [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o [ 81%] Built target MolHash [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructCheckerOptions.cpp.o [ 81%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so [ 81%] Built target rdMolCatalog [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o [ 81%] Linking CXX shared library ../../../lib/libRDKitFMCS.so [ 81%] Linking CXX static library libRDKitMolHash_static.a [ 81%] Built target MolHash_static [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StructureFlags.cpp.o [ 81%] Built target FMCS [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o [ 81%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Utilites.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/../../RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/../../RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:17: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 81%] Linking CXX shared library ../../../lib/libRDKitMMPA.so [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Pattern.cpp.o [ 82%] Built target MMPA [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/id_translator.hpp:16, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/string_path.hpp:15, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/ptree.hpp:16, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/json_parser.hpp:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘typename Translator::external_type boost::property_tree::string_path::reduce() [with String = std::basic_string; Translator = boost::property_tree::id_translator >; typename Translator::external_type = std::basic_string]’: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:892:38: required from ‘boost::property_tree::basic_ptree* boost::property_tree::basic_ptree::walk_path(boost::property_tree::basic_ptree::path_type&) const [with Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:625:35: required from ‘boost::optional&> boost::property_tree::basic_ptree::get_child_optional(const path_type&) const [with Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:813:71: required from ‘boost::optional boost::property_tree::basic_ptree::get_optional(const path_type&) const [with Type = double; Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:781:28: required from ‘typename boost::disable_if, Type>::type boost::property_tree::basic_ptree::get(const path_type&, const Type&) const [with Type = double; Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; typename boost::disable_if, Type>::type = double; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:36:69: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:970:5: warning: unused parameter ‘rhs’ [-Wunused-parameter] optional ( optional && rhs ) = default; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/ptree.hpp:16:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/json_parser.hpp:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/string_path.hpp:218:56: note: synthesized method ‘boost::optional::optional(boost::optional&&) [with T = std::basic_string]’ first required here if(optional key = m_tr.get_value(part)) { ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/id_translator.hpp:16, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/string_path.hpp:15, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/ptree.hpp:16, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/json_parser.hpp:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘typename Translator::external_type boost::property_tree::string_path::reduce() [with String = std::basic_string; Translator = boost::property_tree::id_translator >; typename Translator::external_type = std::basic_string]’: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:892:38: required from ‘boost::property_tree::basic_ptree* boost::property_tree::basic_ptree::walk_path(boost::property_tree::basic_ptree::path_type&) const [with Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:625:35: required from ‘boost::optional&> boost::property_tree::basic_ptree::get_child_optional(const path_type&) const [with Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:813:71: required from ‘boost::optional boost::property_tree::basic_ptree::get_optional(const path_type&) const [with Type = double; Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/detail/ptree_implementation.hpp:781:28: required from ‘typename boost::disable_if, Type>::type boost::property_tree::basic_ptree::get(const path_type&, const Type&) const [with Type = double; Key = std::basic_string; Data = std::basic_string; KeyCompare = std::less >; typename boost::disable_if, Type>::type = double; boost::property_tree::basic_ptree::path_type = boost::property_tree::string_path, boost::property_tree::id_translator > >]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:36:69: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:970:5: warning: unused parameter ‘rhs’ [-Wunused-parameter] optional ( optional && rhs ) = default; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/ptree.hpp:16:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/json_parser.hpp:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:16: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/property_tree/string_path.hpp:218:56: note: synthesized method ‘boost::optional::optional(boost::optional&&) [with T = std::basic_string]’ first required here if(optional key = m_tr.get_value(part)) { ^ [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Stereo.cpp.o [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/AtomSymbolMatch.cpp.o [ 82%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o [ 82%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/StripSmallFragments.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:21, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘typename __gnu_cxx::__enable_if<(! std::__is_scalar<_Tp>::__value), void>::__type std::__fill_a(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Tp = boost::io::detail::format_item, std::allocator >; typename __gnu_cxx::__enable_if<(! std::__is_scalar<_Tp>::__value), void>::__type = void]’: /usr/include/c++/4.8.2/bits/stl_algobase.h:729:14: required from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; _Tp = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/vector.tcc:228:35: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_assign(std::size_t, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::size_t = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:480:34: required from ‘void std::vector<_Tp, _Alloc>::assign(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:118:13: required from ‘void boost::basic_format::make_or_reuse_data(std::size_t) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; std::size_t = long unsigned int]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/parsing.hpp:485:37: required from ‘boost::basic_format& boost::basic_format::parse(const string_type&) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; boost::basic_format::string_type = std::basic_string]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:33:22: required from ‘boost::basic_format::basic_format(const Ch*) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:144:75: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:845:7: warning: unused parameter ‘rhs’ [-Wunused-parameter] class optional ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:35:12: note: synthesized method ‘boost::optional& boost::optional::operator=(const boost::optional&) [with T = std::locale]’ first required here struct stream_format_state ^ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:65:12: note: synthesized method ‘boost::io::detail::stream_format_state >& boost::io::detail::stream_format_state >::operator=(const boost::io::detail::stream_format_state >&)’ first required here struct format_item ^ In file included from /usr/include/c++/4.8.2/vector:60:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:17, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /usr/include/c++/4.8.2/bits/stl_algobase.h:682:11: note: synthesized method ‘boost::io::detail::format_item, std::allocator >& boost::io::detail::format_item, std::allocator >::operator=(const boost::io::detail::format_item, std::allocator >&)’ first required here *__first = __value; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:21, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = boost::io::detail::format_item, std::allocator >; _Args = {boost::io::detail::format_item, std::allocator >}]’: /usr/include/c++/4.8.2/bits/stl_uninitialized.h:75:53: required from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; bool _TrivialValueTypes = false]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:117:41: required from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:258:63: required from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Tp = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:268:24: required from ‘_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = boost::io::detail::format_item, std::allocator >*; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Allocator = std::allocator, std::allocator > >]’ /usr/include/c++/4.8.2/bits/vector.tcc:457:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = boost::io::detail::format_item, std::allocator >*; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:1024:44: required from ‘void std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = boost::io::detail::format_item, std::allocator >*; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:687:42: required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/parsing.hpp:552:9: required from ‘boost::basic_format& boost::basic_format::parse(const string_type&) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; boost::basic_format::string_type = std::basic_string]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:33:22: required from ‘boost::basic_format::basic_format(const Ch*) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:144:75: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:970:5: warning: unused parameter ‘rhs’ [-Wunused-parameter] optional ( optional && rhs ) = default; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:35:12: note: synthesized method ‘boost::optional::optional(boost::optional&&) [with T = std::locale]’ first required here struct stream_format_state ^ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:65:12: note: synthesized method ‘boost::io::detail::stream_format_state >::stream_format_state(boost::io::detail::stream_format_state >&&)’ first required here struct format_item ^ In file included from /usr/include/c++/4.8.2/vector:62:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:17, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /usr/include/c++/4.8.2/bits/stl_construct.h:75:7: note: synthesized method ‘boost::io::detail::format_item, std::allocator >::format_item(boost::io::detail::format_item, std::allocator >&&)’ first required here { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } ^ [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/ReCharge.cpp.o [ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o [ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker_static.dir/Tautomer.cpp.o [ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:21, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘typename __gnu_cxx::__enable_if<(! std::__is_scalar<_Tp>::__value), void>::__type std::__fill_a(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Tp = boost::io::detail::format_item, std::allocator >; typename __gnu_cxx::__enable_if<(! std::__is_scalar<_Tp>::__value), void>::__type = void]’: /usr/include/c++/4.8.2/bits/stl_algobase.h:729:14: required from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; _Tp = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/vector.tcc:228:35: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_assign(std::size_t, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::size_t = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:480:34: required from ‘void std::vector<_Tp, _Alloc>::assign(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:118:13: required from ‘void boost::basic_format::make_or_reuse_data(std::size_t) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; std::size_t = long unsigned int]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/parsing.hpp:485:37: required from ‘boost::basic_format& boost::basic_format::parse(const string_type&) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; boost::basic_format::string_type = std::basic_string]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:33:22: required from ‘boost::basic_format::basic_format(const Ch*) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:144:75: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:845:7: warning: unused parameter ‘rhs’ [-Wunused-parameter] class optional ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:35:12: note: synthesized method ‘boost::optional& boost::optional::operator=(const boost::optional&) [with T = std::locale]’ first required here struct stream_format_state ^ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:65:12: note: synthesized method ‘boost::io::detail::stream_format_state >& boost::io::detail::stream_format_state >::operator=(const boost::io::detail::stream_format_state >&)’ first required here struct format_item ^ In file included from /usr/include/c++/4.8.2/vector:60:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:17, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /usr/include/c++/4.8.2/bits/stl_algobase.h:682:11: note: synthesized method ‘boost::io::detail::format_item, std::allocator >& boost::io::detail::format_item, std::allocator >::operator=(const boost::io::detail::format_item, std::allocator >&)’ first required here *__first = __value; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional.hpp:15:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:21, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp: In instantiation of ‘void std::_Construct(_T1*, _Args&& ...) [with _T1 = boost::io::detail::format_item, std::allocator >; _Args = {boost::io::detail::format_item, std::allocator >}]’: /usr/include/c++/4.8.2/bits/stl_uninitialized.h:75:53: required from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; bool _TrivialValueTypes = false]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:117:41: required from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:258:63: required from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, std::allocator<_Tp>&) [with _InputIterator = std::move_iterator, std::allocator >*>; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Tp = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_uninitialized.h:268:24: required from ‘_ForwardIterator std::__uninitialized_move_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = boost::io::detail::format_item, std::allocator >*; _ForwardIterator = boost::io::detail::format_item, std::allocator >*; _Allocator = std::allocator, std::allocator > >]’ /usr/include/c++/4.8.2/bits/vector.tcc:457:33: required from ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = boost::io::detail::format_item, std::allocator >*; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:1024:44: required from ‘void std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::iterator = __gnu_cxx::__normal_iterator, std::allocator >*, std::vector, std::allocator >, std::allocator, std::allocator > > > >; typename std::_Vector_base<_Tp, _Alloc>::pointer = boost::io::detail::format_item, std::allocator >*; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /usr/include/c++/4.8.2/bits/stl_vector.h:687:42: required from ‘void std::vector<_Tp, _Alloc>::resize(std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = boost::io::detail::format_item, std::allocator >; _Alloc = std::allocator, std::allocator > >; std::vector<_Tp, _Alloc>::size_type = long unsigned int; std::vector<_Tp, _Alloc>::value_type = boost::io::detail::format_item, std::allocator >]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/parsing.hpp:552:9: required from ‘boost::basic_format& boost::basic_format::parse(const string_type&) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator; boost::basic_format::string_type = std::basic_string]’ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/format_implementation.hpp:33:22: required from ‘boost::basic_format::basic_format(const Ch*) [with Ch = char; Tr = std::char_traits; Alloc = std::allocator]’ /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:144:75: required from here /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/optional/optional.hpp:970:5: warning: unused parameter ‘rhs’ [-Wunused-parameter] optional ( optional && rhs ) = default; ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:38:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:35:12: note: synthesized method ‘boost::optional::optional(boost::optional&&) [with T = std::locale]’ first required here struct stream_format_state ^ /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format/internals.hpp:65:12: note: synthesized method ‘boost::io::detail::stream_format_state >::stream_format_state(boost::io::detail::stream_format_state >&&)’ first required here struct format_item ^ In file included from /usr/include/c++/4.8.2/vector:62:0, from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/format.hpp:17, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/StructChecker/Stereo.cpp:11: /usr/include/c++/4.8.2/bits/stl_construct.h:75:7: note: synthesized method ‘boost::io::detail::format_item, std::allocator >::format_item(boost::io::detail::format_item, std::allocator >&&)’ first required here { ::new(static_cast(__p)) _T1(std::forward<_Args>(__args)...); } ^ [ 84%] Linking CXX executable trajectoryTest [ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition_static.dir/RGroupDecomp.cpp.o [ 85%] Built target trajectoryTest [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o [ 85%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o [ 85%] Linking CXX static library libRDKitStructChecker_static.a [ 85%] Built target StructChecker_static [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/MolStandardize.cpp.o [ 85%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so [ 85%] Built target RGroupDecomposition [ 85%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o [ 85%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Metal.cpp.o [ 85%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so [ 85%] Built target StructChecker [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/MolStandardize.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 86%] Linking CXX executable molInterchangeTest1 [ 86%] Built target molInterchangeTest1 [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o [ 86%] Linking CXX static library libRDKitRGroupDecomposition_static.a [ 86%] Built target RGroupDecomposition_static [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Normalize.cpp.o [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Validate.cpp.o [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Validate.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Charge.cpp.o [ 86%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Tautomer.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/MDLParser.cpp:39: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 87%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/Fragment.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Descriptors/test.cpp:24: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Tautomer.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Tautomer.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 87%] Linking CXX executable testAUTOCORR2D [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o [ 87%] Built target testAUTOCORR2D [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/FragmentCatalog/FragmentCatalogParams.cpp.o [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o [ 87%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/ReactionPickler.cpp:18: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 87%] Linking CXX executable testDescriptors [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o [ 87%] Built target testDescriptors [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o [ 87%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o [ 88%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp:37: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2D.cpp.o [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o [ 88%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so [ 88%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DSVG.cpp.o [ 88%] Built target rdmolfiles [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DDetails.cpp.o [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TransformCatalog/TransformCatalogEntry.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/AtomPairs.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:19: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 88%] Linking CXX executable testFMCS [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D_static.dir/MolDraw2DUtils.cpp.o [ 88%] Built target testFMCS [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TransformCatalog/TransformCatalogParams.cpp.o [ 90%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o [ 90%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/PreprocessRxn.cpp:39: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TransformCatalog/TransformCatalogUtils.cpp.o [ 90%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o [ 90%] Linking CXX static library libRDKitMolDraw2D_static.a [ 90%] Built target MolDraw2D_static [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TautomerCatalog/TautomerCatalogParams.cpp.o [ 90%] Linking CXX executable FMCStest [ 90%] Built target FMCStest In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 90%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so [ 90%] Built target rdMolDescriptors [ 90%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize_static.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o [ 90%] Linking CXX executable testMolHash [ 90%] Built target testMolHash [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o [ 90%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so [ 90%] Built target rdFMCS [ 90%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o [ 90%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o [ 90%] Linking CXX executable testMMPA [ 90%] Built target testMMPA [ 90%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o [ 90%] Linking CXX static library libRDKitMolStandardize_static.a [ 90%] Built target MolStandardize_static [ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o [ 90%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so [ 90%] Built target rdMolHash [ 90%] Linking CXX executable testStructChecker [ 90%] Built target testStructChecker [ 91%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so [ 91%] Built target ChemReactions [ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o [ 91%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o [ 92%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o [ 93%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so [ 93%] Built target rdMMPA [ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o [ 93%] Linking CXX executable testRGroupDecomp [ 93%] Built target testRGroupDecomp [ 93%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/ReactionFingerprints.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp:41: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so [ 93%] Built target rdStructChecker [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o [ 93%] Linking CXX executable testReactionFingerprints [ 93%] Built target testReactionFingerprints [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o [ 93%] Linking CXX executable testEnumeration [ 93%] Built target testEnumeration [ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FilterCatalog.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h:36, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp:42: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 94%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so [ 94%] Built target rdRGroupDecomposition [ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o [ 94%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DCairo.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/MolStandardize.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o [ 94%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so [ 94%] Built target MolDraw2D [ 94%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o [ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 95%] Linking CXX executable rxnTestCatch [ 95%] Built target rxnTestCatch [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o [ 95%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Validate.cpp:11: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 95%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so [ 95%] Built target rdChemReactions [ 95%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Tautomer.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Tautomer.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 96%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o [ 96%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 96%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o [ 97%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o [ 97%] Linking CXX executable moldraw2DTest1 [ 97%] Built target moldraw2DTest1 [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o [ 97%] Linking CXX executable moldraw2DRxnTest1 [ 97%] Built target moldraw2DRxnTest1 [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o [ 97%] Linking CXX executable testReaction [ 97%] Built target testReaction [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o [ 97%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/DataStructs/SparseIntVect.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Fingerprints/Fingerprints.h:16, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/Wrap/MolOps.cpp:26: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 98%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so [ 98%] Built target rdMolDraw2D [ 98%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so [ 98%] Built target MolStandardize [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o [ 98%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Tautomer.h:15, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/testTautomer.cpp:10: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/testCharge.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/testNormalize.cpp:12: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/testFragment.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/test2.cpp:15: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [ 98%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so [ 98%] Built target rdmolops [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o [ 99%] Linking CXX executable molNormalizeTest [ 99%] Built target molNormalizeTest [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o [ 99%] Linking CXX executable molFragmentTest [ 99%] Linking CXX executable molChargeTest [ 99%] Built target molFragmentTest [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o [ 99%] Built target molChargeTest [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o [ 99%] Linking CXX executable molStandardizeTest [ 99%] Linking CXX executable molValidateTest [ 99%] Built target molStandardizeTest [ 99%] Built target molValidateTest [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o [ 99%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o [100%] Linking CXX executable molStandardizeSmallTest [100%] Built target molStandardizeSmallTest [100%] Linking CXX executable molTautomerTest [100%] Built target molTautomerTest In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Charge.h:20, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Wrap/Charge.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Fragment.h:14, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ In file included from /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/detail/endian.hpp:9:0, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/RDGeneral/StreamOps.h:22, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/Catalogs/Catalog.h:29, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Normalize.h:19, from /netscr/pemsley/autobuild/hal.lmb.internal_2021-07-27__T01_53_46/rdkit-Release_2018_09_3/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp:13: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/boost/predef/detail/endian_compat.h:11:161: note: #pragma message: The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead #pragma message("The use of BOOST_*_ENDIAN and BOOST_BYTE_ORDER is deprecated. Please include and use BOOST_ENDIAN_*_BYTE instead") ^ [100%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so [100%] Built target rdMolStandardize [ 0%] Built target catch [ 0%] Built target inchi_support [ 0%] Built target coordgen_support Consolidate compiler generated dependencies of target maeparser [ 1%] Built target maeparser Consolidate compiler generated dependencies of target maeparser_static [ 1%] Built target maeparser_static Consolidate compiler generated dependencies of target coordgenlib [ 3%] Built target coordgenlib Consolidate compiler generated dependencies of target coordgenlib_static [ 4%] Built target coordgenlib_static Consolidate compiler generated dependencies of target RDGeneral [ 5%] Built target RDGeneral Consolidate compiler generated dependencies of target DataStructs [ 6%] Built target DataStructs Consolidate compiler generated dependencies of target RDGeometryLib [ 7%] Built target RDGeometryLib Consolidate compiler generated dependencies of target GraphMol [ 10%] Built target GraphMol Consolidate compiler generated dependencies of target Trajectory [ 11%] Built target Trajectory Consolidate compiler generated dependencies of target Alignment [ 11%] Built target Alignment Consolidate compiler generated dependencies of target EigenSolvers [ 12%] Built target EigenSolvers Consolidate compiler generated dependencies of target Optimizer [ 13%] Built target Optimizer Consolidate compiler generated dependencies of target ForceField [ 15%] Built target ForceField Consolidate compiler generated dependencies of target SmilesParse [ 16%] Built target SmilesParse Consolidate compiler generated dependencies of target SubstructMatch [ 16%] Built target SubstructMatch Consolidate compiler generated dependencies of target MolTransforms [ 16%] Built target MolTransforms Consolidate compiler generated dependencies of target ForceFieldHelpers [ 17%] Built target ForceFieldHelpers Consolidate compiler generated dependencies of target MolAlign [ 17%] Built target MolAlign Consolidate compiler generated dependencies of target Depictor [ 17%] Built target Depictor Consolidate compiler generated dependencies of target FileParsers [ 19%] Built target FileParsers Consolidate compiler generated dependencies of target testCoordGen [ 19%] Built target testCoordGen Consolidate compiler generated dependencies of target RDBoost [ 19%] Built target RDBoost Consolidate compiler generated dependencies of target rdCoordGen [ 19%] Built target rdCoordGen Consolidate compiler generated dependencies of target RDGeneral_static [ 20%] Built target RDGeneral_static Consolidate compiler generated dependencies of target testDict [ 20%] Built target testDict Consolidate compiler generated dependencies of target testRDValue [ 20%] Built target testRDValue Consolidate compiler generated dependencies of target RDBoost_static [ 20%] Built target RDBoost_static Consolidate compiler generated dependencies of target rdBase [ 20%] Built target rdBase Consolidate compiler generated dependencies of target DataStructs_static [ 21%] Built target DataStructs_static Consolidate compiler generated dependencies of target testDataStructs [ 21%] Built target testDataStructs Consolidate compiler generated dependencies of target testFPB [ 21%] Built target testFPB Consolidate compiler generated dependencies of target testMultiFPB [ 21%] Built target testMultiFPB Consolidate compiler generated dependencies of target cDataStructs [ 22%] Built target cDataStructs Consolidate compiler generated dependencies of target RDGeometryLib_static [ 22%] Built target RDGeometryLib_static Consolidate compiler generated dependencies of target testTransforms [ 22%] Built target testTransforms Consolidate compiler generated dependencies of target testGrid [ 22%] Built target testGrid Consolidate compiler generated dependencies of target rdGeometry [ 23%] Built target rdGeometry Consolidate compiler generated dependencies of target testMatrices [ 23%] Built target testMatrices Consolidate compiler generated dependencies of target Alignment_static [ 23%] Built target Alignment_static Consolidate compiler generated dependencies of target testAlignment [ 23%] Built target testAlignment Consolidate compiler generated dependencies of target rdAlignment [ 23%] Built target rdAlignment Consolidate compiler generated dependencies of target EigenSolvers_static [ 23%] Built target EigenSolvers_static Consolidate compiler generated dependencies of target testOptimizer [ 23%] Built target testOptimizer Consolidate compiler generated dependencies of target GraphMol_static [ 26%] Built target GraphMol_static Consolidate compiler generated dependencies of target Trajectory_static [ 26%] Built target Trajectory_static Consolidate compiler generated dependencies of target Optimizer_static [ 26%] Built target Optimizer_static Consolidate compiler generated dependencies of target ForceField_static [ 28%] Built target ForceField_static Consolidate compiler generated dependencies of target testUFFForceField [ 28%] Built target testUFFForceField Consolidate compiler generated dependencies of target DistGeometry [ 29%] Built target DistGeometry Consolidate compiler generated dependencies of target DistGeomHelpers [ 29%] Built target DistGeomHelpers Consolidate compiler generated dependencies of target testMMFFForceField [ 30%] Built target testMMFFForceField Consolidate compiler generated dependencies of target rdForceField [ 30%] Built target rdForceField Consolidate compiler generated dependencies of target SmilesParse_static [ 31%] Built target SmilesParse_static Consolidate compiler generated dependencies of target SubstructMatch_static [ 31%] Built target SubstructMatch_static Consolidate compiler generated dependencies of target ForceFieldHelpers_static [ 32%] Built target ForceFieldHelpers_static Consolidate compiler generated dependencies of target DistGeometry_static [ 32%] Built target 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dependencies of target graphmolMolOpsTest [ 37%] Built target graphmolMolOpsTest Consolidate compiler generated dependencies of target graphmolcpTest [ 37%] Built target graphmolcpTest Consolidate compiler generated dependencies of target test-valgrind [ 37%] Built target test-valgrind Consolidate compiler generated dependencies of target graphmolTest1 [ 37%] Built target graphmolTest1 Consolidate compiler generated dependencies of target hanoiTest [ 38%] Built target hanoiTest Consolidate compiler generated dependencies of target graphmolqueryTest [ 38%] Built target graphmolqueryTest Consolidate compiler generated dependencies of target graphmolMemTest1 [ 38%] Built target graphmolMemTest1 Consolidate compiler generated dependencies of target resMolSupplierTest [ 39%] Built target resMolSupplierTest Consolidate compiler generated dependencies of target graphmolTestsCatch [ 39%] Built target graphmolTestsCatch Consolidate compiler generated dependencies of target graphmoltestPicklerGlobalSetting [ 39%] Built target graphmoltestPicklerGlobalSetting Consolidate compiler generated dependencies of target MolTransforms_static [ 39%] Built target MolTransforms_static Consolidate compiler generated dependencies of target MolAlign_static [ 40%] Built target MolAlign_static Consolidate compiler generated dependencies of target Depictor_static [ 41%] Built target Depictor_static Consolidate compiler generated dependencies of target ChemTransforms [ 42%] Built target ChemTransforms Consolidate compiler generated dependencies of target testDepictor [ 43%] Built target testDepictor Consolidate compiler generated dependencies of target rdDepictor [ 43%] Built target rdDepictor Consolidate compiler generated dependencies of target smiTest1 [ 43%] Built target smiTest1 Consolidate compiler generated dependencies of target cxsmilesTest [ 43%] Built target cxsmilesTest Consolidate compiler generated dependencies of target smaTest1 [ 43%] Built target smaTest1 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testSequence [ 51%] Built target testSequence Consolidate compiler generated dependencies of target testExtendedStereoParsing [ 51%] Built target testExtendedStereoParsing Consolidate compiler generated dependencies of target testSubstructMatch [ 51%] Built target testSubstructMatch Consolidate compiler generated dependencies of target Subgraphs [ 51%] Built target Subgraphs Consolidate compiler generated dependencies of target FilterCatalog [ 51%] Built target FilterCatalog Consolidate compiler generated dependencies of target PartialCharges [ 51%] Built target PartialCharges Consolidate compiler generated dependencies of target Descriptors [ 52%] Built target Descriptors Consolidate compiler generated dependencies of target Fingerprints [ 53%] Built target Fingerprints Consolidate compiler generated dependencies of target ChemReactions [ 55%] Built target ChemReactions Consolidate compiler generated dependencies of target ChemTransforms_static [ 55%] Built target ChemTransforms_static Consolidate compiler generated dependencies of target Subgraphs_static [ 56%] Built target Subgraphs_static Consolidate compiler generated dependencies of target FilterCatalog_static [ 57%] Built target FilterCatalog_static Consolidate compiler generated dependencies of target PartialCharges_static [ 58%] Built target PartialCharges_static Consolidate compiler generated dependencies of target Descriptors_static [ 59%] Built target Descriptors_static Consolidate compiler generated dependencies of target Fingerprints_static [ 61%] Built target Fingerprints_static Consolidate compiler generated dependencies of target ChemReactions_static [ 62%] Built target ChemReactions_static Consolidate compiler generated dependencies of target testReaction [ 62%] Built target testReaction Consolidate compiler generated dependencies of target testReactionFingerprints [ 63%] Built target testReactionFingerprints Consolidate compiler generated dependencies of target testEnumeration [ 64%] Built target testEnumeration Consolidate compiler generated dependencies of target rxnTestCatch [ 64%] Built target rxnTestCatch Consolidate compiler generated dependencies of target rdChemReactions [ 64%] Built target rdChemReactions Consolidate compiler generated dependencies of target testChemTransforms [ 64%] Built target testChemTransforms Consolidate compiler generated dependencies of target testSubgraphs1 [ 64%] Built target testSubgraphs1 Consolidate compiler generated dependencies of target testSubgraphs2 [ 64%] Built target testSubgraphs2 Consolidate compiler generated dependencies of target filterCatalogTest [ 64%] Built target filterCatalogTest Consolidate compiler generated dependencies of target rdfiltercatalog [ 65%] Built target rdfiltercatalog Consolidate compiler generated dependencies of target FragCatalog [ 66%] Built target FragCatalog Consolidate compiler generated dependencies of target testFragCatalog [ 66%] Built target testFragCatalog Consolidate compiler generated dependencies of target FragCatalog_static [ 67%] Built target FragCatalog_static Consolidate compiler generated dependencies of target rdfragcatalog [ 67%] Built target rdfragcatalog Consolidate compiler generated dependencies of target testDescriptors [ 67%] Built target testDescriptors Consolidate compiler generated dependencies of target testAUTOCORR2D [ 67%] Built target testAUTOCORR2D Consolidate compiler generated dependencies of target rdMolDescriptors [ 67%] Built target rdMolDescriptors Consolidate compiler generated dependencies of target testFingerprintGenerators [ 67%] Built target testFingerprintGenerators Consolidate compiler generated dependencies of target testFingerprints [ 67%] Built target testFingerprints Consolidate compiler generated dependencies of target rdFingerprintGenerator [ 67%] Built target rdFingerprintGenerator Consolidate compiler generated dependencies of target testPartialCharges [ 68%] Built target testPartialCharges Consolidate compiler generated dependencies of target rdPartialCharges [ 69%] Built target rdPartialCharges Consolidate compiler generated dependencies of target testMolTransforms [ 69%] Built target testMolTransforms Consolidate compiler generated dependencies of target rdMolTransforms [ 69%] Built target rdMolTransforms Consolidate compiler generated dependencies of target testMMFFForceFieldHelpers [ 69%] Built target testMMFFForceFieldHelpers Consolidate compiler generated dependencies of target testUFFForceFieldHelpers [ 69%] Built target testUFFForceFieldHelpers Consolidate compiler generated dependencies of target testCrystalForceField [ 69%] Built target testCrystalForceField Consolidate compiler generated dependencies of target rdForceFieldHelpers [ 69%] Built target rdForceFieldHelpers Consolidate compiler generated dependencies of target testDistGeomHelpers [ 69%] Built target testDistGeomHelpers Consolidate compiler generated dependencies of target DistGeomHelpers_static [ 69%] Built target DistGeomHelpers_static Consolidate compiler generated dependencies of target rdDistGeom [ 69%] Built target rdDistGeom Consolidate compiler generated dependencies of target testMolAlign [ 69%] Built target testMolAlign Consolidate compiler generated dependencies of target rdMolAlign [ 69%] Built target rdMolAlign Consolidate compiler generated dependencies of target MolChemicalFeatures [ 70%] Built target MolChemicalFeatures Consolidate compiler generated dependencies of target MolChemicalFeatures_static [ 70%] Built target MolChemicalFeatures_static Consolidate compiler generated dependencies of target testFeatures [ 71%] Built target testFeatures Consolidate compiler generated dependencies of target rdMolChemicalFeatures [ 72%] Built target rdMolChemicalFeatures Consolidate compiler generated dependencies of target ShapeHelpers_static [ 73%] Built target ShapeHelpers_static Consolidate compiler generated dependencies of target ShapeHelpers [ 73%] Built target ShapeHelpers Consolidate compiler generated dependencies of target testShapeHelpers [ 73%] Built target testShapeHelpers Consolidate compiler generated dependencies of target rdShapeHelpers [ 73%] Built target rdShapeHelpers Consolidate compiler generated dependencies of target MolCatalog [ 73%] Built target MolCatalog Consolidate compiler generated dependencies of target testMolCatalog [ 73%] Built target testMolCatalog Consolidate compiler generated dependencies of target MolCatalog_static [ 73%] Built target MolCatalog_static Consolidate compiler generated dependencies of target rdMolCatalog [ 73%] Built target rdMolCatalog Consolidate compiler generated dependencies of target MolDraw2D [ 74%] Built target MolDraw2D Consolidate compiler generated dependencies of target MolDraw2D_static [ 74%] Built target MolDraw2D_static Consolidate compiler generated dependencies of target moldraw2DTest1 [ 75%] Built target moldraw2DTest1 Consolidate compiler generated dependencies of target moldraw2DRxnTest1 [ 75%] Built target moldraw2DRxnTest1 Consolidate compiler generated dependencies of target rdMolDraw2D [ 75%] Built target rdMolDraw2D Consolidate compiler generated dependencies of target FMCS [ 75%] Built target FMCS Consolidate compiler generated dependencies of target testFMCS [ 75%] Built target testFMCS Consolidate compiler generated dependencies of target FMCS_static [ 76%] Built target FMCS_static Consolidate compiler generated dependencies of target rdFMCS [ 77%] Built target rdFMCS Consolidate compiler generated dependencies of target FMCStest [ 77%] Built target FMCStest Consolidate compiler generated dependencies of target MolHash [ 78%] Built target MolHash Consolidate compiler generated dependencies of target testMolHash [ 78%] Built target testMolHash Consolidate compiler generated dependencies of target MolHash_static [ 78%] Built target MolHash_static Consolidate compiler generated dependencies of target rdMolHash [ 78%] Built target rdMolHash Consolidate compiler generated dependencies of target MMPA [ 79%] Built target MMPA Consolidate compiler generated dependencies of target MMPA_static [ 79%] Built target MMPA_static Consolidate compiler generated dependencies of target testMMPA [ 79%] Built target testMMPA Consolidate compiler generated dependencies of target rdMMPA [ 79%] Built target rdMMPA Consolidate compiler generated dependencies of target StructChecker [ 80%] Built target StructChecker Consolidate compiler generated dependencies of target StructChecker_static [ 81%] Built target StructChecker_static Consolidate compiler generated dependencies of target testStructChecker [ 81%] Built target testStructChecker Consolidate compiler generated dependencies of target rdStructChecker [ 81%] Built target rdStructChecker Consolidate compiler generated dependencies of target ReducedGraphs [ 81%] Built target ReducedGraphs Consolidate compiler generated dependencies of target testReducedGraphs [ 81%] Built target testReducedGraphs Consolidate compiler generated dependencies of target ReducedGraphs_static [ 81%] Built target ReducedGraphs_static Consolidate compiler generated dependencies of target rdReducedGraphs [ 81%] Built target rdReducedGraphs Consolidate compiler generated dependencies of target trajectoryTest [ 82%] Built target trajectoryTest Consolidate compiler generated dependencies of target RGroupDecomposition [ 82%] Built target RGroupDecomposition Consolidate compiler generated dependencies of target testRGroupDecomp [ 82%] Built target testRGroupDecomp Consolidate compiler generated dependencies of target RGroupDecomposition_static [ 83%] Built target RGroupDecomposition_static Consolidate compiler generated dependencies of target rdRGroupDecomposition [ 83%] Built target rdRGroupDecomposition Consolidate compiler generated dependencies of target MolInterchange [ 83%] Built target MolInterchange Consolidate compiler generated dependencies of target MolInterchange_static [ 84%] Built target MolInterchange_static Consolidate compiler generated dependencies of target molInterchangeTest1 [ 84%] Built target molInterchangeTest1 Consolidate compiler generated dependencies of target rdMolInterchange [ 84%] Built target rdMolInterchange Consolidate compiler generated dependencies of target rdchem [ 85%] Built target rdchem Consolidate compiler generated dependencies of target rdmolops [ 86%] Built target rdmolops Consolidate compiler generated dependencies of target rdqueries [ 86%] Built target rdqueries Consolidate compiler generated dependencies of target rdmolfiles [ 87%] Built target rdmolfiles Consolidate compiler generated dependencies of target rdtrajectory [ 87%] Built target rdtrajectory Consolidate compiler generated dependencies of target MolStandardize [ 89%] Built target MolStandardize Consolidate compiler generated dependencies of target MolStandardize_static [ 91%] Built target MolStandardize_static Consolidate compiler generated dependencies of target molValidateTest [ 91%] Built target molValidateTest Consolidate compiler generated dependencies of target molStandardizeTest [ 91%] Built target molStandardizeTest Consolidate compiler generated dependencies of target molNormalizeTest [ 91%] Built target molNormalizeTest Consolidate compiler generated dependencies of target molChargeTest [ 91%] Built target molChargeTest Consolidate compiler generated dependencies of target molStandardizeSmallTest [ 92%] Built target molStandardizeSmallTest Consolidate compiler generated dependencies of target molTautomerTest [ 92%] Built target molTautomerTest Consolidate compiler generated dependencies of target molFragmentTest [ 92%] Built target molFragmentTest Consolidate compiler generated dependencies of target rdMolStandardize [ 93%] Built target rdMolStandardize Consolidate compiler generated dependencies of target testQuery [ 93%] Built target testQuery Consolidate compiler generated dependencies of target testMatCalc [ 93%] Built target testMatCalc Consolidate compiler generated dependencies of target rdMetricMatrixCalc [ 94%] Built target rdMetricMatrixCalc Consolidate compiler generated dependencies of target hc [ 94%] Built target hc Consolidate compiler generated dependencies of target SimDivPickers [ 94%] Built target SimDivPickers Consolidate compiler generated dependencies of target hc_static [ 94%] Built target hc_static Consolidate compiler generated dependencies of target SimDivPickers_static [ 95%] Built target SimDivPickers_static Consolidate compiler generated dependencies of target testSimDivPickers [ 96%] Built target testSimDivPickers Consolidate compiler generated dependencies of target rdSimDivPickers [ 97%] Built target rdSimDivPickers Consolidate compiler generated dependencies of target Clustering [ 98%] Built target Clustering Consolidate compiler generated dependencies of target InfoTheory_static [ 98%] Built target InfoTheory_static Consolidate compiler generated dependencies of target InfoTheory [ 98%] Built target InfoTheory Consolidate compiler generated dependencies of target rdInfoTheory [ 98%] Built target rdInfoTheory Consolidate compiler generated dependencies of target cQuantize [ 98%] Built target cQuantize Consolidate compiler generated dependencies of target ChemicalFeatures [ 98%] Built target ChemicalFeatures Consolidate compiler generated dependencies of target testChemicalFeatures [ 99%] Built target testChemicalFeatures Consolidate compiler generated dependencies of target ChemicalFeatures_static [ 99%] Built target ChemicalFeatures_static Consolidate compiler generated dependencies of target rdChemicalFeatures [100%] Built target rdChemicalFeatures Install the project... -- Install configuration: "Release" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: 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Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/RDKit/README -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/RDKit/license.txt -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so.1 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser_static.a -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so.1.2018.09.3 -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so.1 -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitmaeparser.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib_static.a -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so.1.2018.09.3 -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so.1 -- Up-to-date: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitcoordgenlib.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/RDKit/Data/templates.mae -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/CoordGen.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdCoordGen.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdCoordGen.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeneral.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeneral.so.1 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeneral.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeneral_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/Exceptions.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/BadFileException.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/Dict.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/FileParseException.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/Invariant.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDAny.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDValue.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDLog.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDProps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDThreads.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/StreamOps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/types.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/utils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/versions.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/RDConfig.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/Ranking.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/export.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/test.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/extensions.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/hash.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/detail -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDBoost.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDBoost.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDBoost.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDBoost.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDBoost_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/Wrap.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/python.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/boost_numpy.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/RDBoost/python_streambuf.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/rdBase.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/rdBase.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDataStructs.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDataStructs.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDataStructs.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDataStructs.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDataStructs_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/base64.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/BitOps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/BitVect.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/BitVects.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/DatastructsException.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/FPBReader.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DataStructs/cDataStructs.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeometryLib.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeometryLib.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeometryLib.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeometryLib.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRDGeometryLib_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/Grid3D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/GridUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/point.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/Transform2D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/Transform3D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/Transform.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Geometry/Utils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Geometry/rdGeometry.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Geometry/rdGeometry.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/Matrix.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/SquareMatrix.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/SymmMatrix.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/Vector.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitAlignment.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitAlignment.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitAlignment.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitAlignment.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitAlignment_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Numerics/rdAlignment.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Numerics/rdAlignment.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitEigenSolvers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitEigenSolvers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitEigenSolvers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitEigenSolvers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitEigenSolvers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitOptimizer.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitOptimizer.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitOptimizer.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitOptimizer.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitOptimizer_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceField.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceField.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceField.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceField.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceField_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/Contrib.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/ForceField.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/Params.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ForceField/MMFF/Params.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ForceField/rdForceField.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ForceField/rdForceField.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeometry.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeometry.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeometry.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeometry.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeometry_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/ChiralSet.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DistanceGeometry/DistGeom.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitCatalogs.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitCatalogs.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitCatalogs.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitCatalogs.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitCatalogs_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Catalogs/Catalog.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Catalogs/CatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitGraphMol.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitGraphMol.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitGraphMol.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitGraphMol.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitGraphMol_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Atom.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/atomic_data.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/AtomIterators.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Bond.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/BondIterators.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Canon.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Chirality.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Conformer.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/details.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/GraphMol.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolOps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolPickler.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/QueryAtom.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/QueryBond.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/QueryOps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/RDKitBase.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Resonance.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/RingInfo.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Rings.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ROMol.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/RWMol.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SanitException.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StereoGroup.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/new_canon.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolBundle.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDepictor.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDepictor.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDepictor.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDepictor.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDepictor_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdDepictor.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdDepictor.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSmilesParse.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSmilesParse.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSmilesParse.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSmilesParse.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSmilesParse_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFileParsers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFileParsers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFileParsers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFileParsers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFileParsers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubstructMatch.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubstructMatch.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubstructMatch.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubstructMatch.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubstructMatch_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemReactions.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemReactions.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemReactions.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemReactions.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemReactions_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/Enumerate.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/RandomSample.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdChemReactions.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdChemReactions.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemTransforms.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemTransforms.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemTransforms.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemTransforms.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemTransforms_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubgraphs.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubgraphs.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubgraphs.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubgraphs.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSubgraphs_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFilterCatalog.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFilterCatalog.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFilterCatalog.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFilterCatalog.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFilterCatalog_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdfiltercatalog.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFragCatalog.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFragCatalog.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFragCatalog.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFragCatalog.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFragCatalog_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdfragcatalog.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDescriptors.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDescriptors.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDescriptors.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDescriptors.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDescriptors_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolDescriptors.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFingerprints.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFingerprints.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFingerprints.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFingerprints.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFingerprints_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdFingerprintGenerator.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitPartialCharges.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitPartialCharges.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitPartialCharges.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitPartialCharges.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitPartialCharges_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdPartialCharges.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolTransforms.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolTransforms.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolTransforms.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolTransforms.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolTransforms_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolTransforms.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceFieldHelpers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceFieldHelpers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceFieldHelpers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceFieldHelpers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitForceFieldHelpers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdForceFieldHelpers.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeomHelpers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeomHelpers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeomHelpers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeomHelpers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitDistGeomHelpers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdDistGeom.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdDistGeom.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolAlign.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolAlign.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolAlign.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolAlign.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolAlign_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolAlign.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolAlign.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolChemicalFeatures.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolChemicalFeatures.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolChemicalFeatures.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolChemicalFeatures.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolChemicalFeatures_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolChemicalFeatures.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitShapeHelpers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitShapeHelpers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitShapeHelpers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitShapeHelpers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitShapeHelpers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdShapeHelpers.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolCatalog.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolCatalog.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolCatalog.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolCatalog.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolCatalog_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolCatalog.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolDraw2D.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolDraw2D.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolDraw2D.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolDraw2D.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolDraw2D_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolDraw2D/MolDraw2DCairo.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFMCS.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFMCS.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFMCS.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFMCS.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitFMCS_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/Seed.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/SeedSet.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/MatchTable.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdFMCS.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdFMCS.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolHash.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolHash.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolHash.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolHash.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolHash_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolHash.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolHash.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMMPA.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMMPA.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMMPA.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMMPA.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMMPA_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMMPA.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMMPA.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitStructChecker.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitStructChecker.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitStructChecker.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitStructChecker.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitStructChecker_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/StructChecker.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/Utilites.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/Pattern.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/Stereo.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/ReCharge.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/StructChecker/Tautomer.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdStructChecker.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdStructChecker.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitReducedGraphs.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitReducedGraphs.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitReducedGraphs.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitReducedGraphs.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitReducedGraphs_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdReducedGraphs.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitTrajectory.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitTrajectory.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitTrajectory.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitTrajectory.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitTrajectory_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRGroupDecomposition.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRGroupDecomposition.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRGroupDecomposition.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRGroupDecomposition.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitRGroupDecomposition_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdRGroupDecomposition.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolInterchange.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolInterchange.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolInterchange.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolInterchange.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolInterchange_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolInterchange.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdMolInterchange.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdchem.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdchem.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdmolops.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdmolops.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdqueries.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdqueries.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdmolfiles.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdmolfiles.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdtrajectory.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdtrajectory.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolStandardize.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolStandardize.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolStandardize.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolStandardize.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitMolStandardize_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/FragmentCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/FragmentCatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/FragmentCatalogUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TransformCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TransformCatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TransformCatalogUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TautomerCatalogEntry.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TautomerCatalogParams.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/GraphMol/MolStandardize/TautomerCatalogUtils.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/AndQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/EqualityQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/GreaterQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/LessEqualQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/LessQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/OrQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/Query.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/QueryObjects.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/RangeQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/SetQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Query/XOrQuery.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/Features/Feature.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSimDivPickers.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSimDivPickers.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSimDivPickers.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSimDivPickers.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitSimDivPickers_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKithc.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKithc.so.1 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKithc.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKithc_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/Cluster/Clustering.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitInfoTheory.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitInfoTheory.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitInfoTheory.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitInfoTheory.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitInfoTheory_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/Data/cQuantize.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/ML/Data/cQuantize.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemicalFeatures.so.1.2018.09.3 -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemicalFeatures.so.1 -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemicalFeatures.so.1.2018.09.3" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemicalFeatures.so -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/libRDKitChemicalFeatures_static.a -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Set runtime path of "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/Chem/rdChemicalFeatures.so" to "" -- Installing: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/rdkit/RDPaths.py