checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
building for linux-gnu
checking for a BSD-compatible install... /bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking for ranlib... ranlib
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... no
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating m4/Makefile
config.status: creating src/Makefile
config.status: creating src/clustalw_version.h
config.status: creating src/config.h
config.status: executing depfiles commands
Making all in m4
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
Making all in src
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make  all-recursive
make[2]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[3]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT FullPairwiseAlign.o -MD -MP -MF .deps/FullPairwiseAlign.Tpo -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT FastPairwiseAlign.o -MD -MP -MF .deps/FastPairwiseAlign.Tpo -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT MSFFileParser.o -MD -MP -MF .deps/MSFFileParser.Tpo -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT FileReader.o -MD -MP -MF .deps/FileReader.Tpo -c -o FileReader.o `test -f './fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT PIRFileParser.o -MD -MP -MF .deps/PIRFileParser.Tpo -c -o PIRFileParser.o `test -f './fileInput/PIRFileParser.cpp' || echo './'`./fileInput/PIRFileParser.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT RSFFileParser.o -MD -MP -MF .deps/RSFFileParser.Tpo -c -o RSFFileParser.o `test -f './fileInput/RSFFileParser.cpp' || echo './'`./fileInput/RSFFileParser.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT GDEFileParser.o -MD -MP -MF .deps/GDEFileParser.Tpo -c -o GDEFileParser.o `test -f './fileInput/GDEFileParser.cpp' || echo './'`./fileInput/GDEFileParser.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT InFileStream.o -MD -MP -MF .deps/InFileStream.Tpo -c -o InFileStream.o `test -f './fileInput/InFileStream.cpp' || echo './'`./fileInput/InFileStream.cpp
In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./pairwise/../alignment/Alignment.h:42,
                 from ./pairwise/PairwiseAlignBase.h:10,
                 from ./pairwise/FastPairwiseAlign.h:9,
                 from ./pairwise/FastPairwiseAlign.cpp:10:
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./pairwise/../alignment/Alignment.h:42,
                 from ./pairwise/PairwiseAlignBase.h:10,
                 from ./pairwise/FullPairwiseAlign.h:9,
                 from ./pairwise/FullPairwiseAlign.cpp:9:
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./fileInput/../alignment/Alignment.h:42,
                 from ./fileInput/FileReader.h:12,
                 from ./fileInput/FileReader.cpp:29:
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/InFileStream.Tpo .deps/InFileStream.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ClustalFileParser.o -MD -MP -MF .deps/ClustalFileParser.Tpo -c -o ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo './'`./fileInput/ClustalFileParser.cpp
mv -f .deps/FullPairwiseAlign.Tpo .deps/FullPairwiseAlign.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT PearsonFileParser.o -MD -MP -MF .deps/PearsonFileParser.Tpo -c -o PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo './'`./fileInput/PearsonFileParser.cpp
mv -f .deps/MSFFileParser.Tpo .deps/MSFFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT FileParser.o -MD -MP -MF .deps/FileParser.Tpo -c -o FileParser.o `test -f './fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp
mv -f .deps/PIRFileParser.Tpo .deps/PIRFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT EMBLFileParser.o -MD -MP -MF .deps/EMBLFileParser.Tpo -c -o EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo './'`./fileInput/EMBLFileParser.cpp
mv -f .deps/FastPairwiseAlign.Tpo .deps/FastPairwiseAlign.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT RootedClusterTree.o -MD -MP -MF .deps/RootedClusterTree.Tpo -c -o RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo './'`./tree/UPGMA/RootedClusterTree.cpp
mv -f .deps/RSFFileParser.Tpo .deps/RSFFileParser.Po
mv -f .deps/GDEFileParser.Tpo .deps/GDEFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT UPGMAAlgorithm.o -MD -MP -MF .deps/UPGMAAlgorithm.Tpo -c -o UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo './'`./tree/UPGMA/UPGMAAlgorithm.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o `test -f './tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp
In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/UPGMA/../../alignment/Alignment.h:42,
                 from ./tree/UPGMA/../ClusterTree.h:20,
                 from ./tree/UPGMA/RootedClusterTree.h:8,
                 from ./tree/UPGMA/RootedClusterTree.cpp:9:
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/UPGMA/../../alignment/Alignment.h:42,
                 from ./tree/UPGMA/RootedGuideTree.h:17,
                 from ./tree/UPGMA/UPGMAAlgorithm.h:8,
                 from ./tree/UPGMA/UPGMAAlgorithm.cpp:4:
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/FileParser.Tpo .deps/FileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT RootedGuideTree.o -MD -MP -MF .deps/RootedGuideTree.Tpo -c -o RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo './'`./tree/UPGMA/RootedGuideTree.cpp
mv -f .deps/ClustalFileParser.Tpo .deps/ClustalFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT RootedTreeOutput.o -MD -MP -MF .deps/RootedTreeOutput.Tpo -c -o RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo './'`./tree/UPGMA/RootedTreeOutput.cpp
In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/UPGMA/../../alignment/Alignment.h:42,
                 from ./tree/UPGMA/RootedGuideTree.h:17,
                 from ./tree/UPGMA/RootedGuideTree.cpp:10:
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/Node.Tpo .deps/Node.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Tree.o -MD -MP -MF .deps/Tree.Tpo -c -o Tree.o `test -f './tree/Tree.cpp' || echo './'`./tree/Tree.cpp
mv -f .deps/FileReader.Tpo .deps/FileReader.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ClusterTree.o -MD -MP -MF .deps/ClusterTree.Tpo -c -o ClusterTree.o `test -f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp
In file included from ./tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/UPGMA/../../alignment/Alignment.h:42,
                 from ./tree/UPGMA/RootedGuideTree.h:17,
                 from ./tree/UPGMA/RootedTreeOutput.h:15,
                 from ./tree/UPGMA/RootedTreeOutput.cpp:9:
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/RootedClusterTree.Tpo .deps/RootedClusterTree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT TreeInterface.o -MD -MP -MF .deps/TreeInterface.Tpo -c -o TreeInterface.o `test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp
mv -f .deps/RootedGuideTree.Tpo .deps/RootedGuideTree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT UnRootedClusterTree.o -MD -MP -MF .deps/UnRootedClusterTree.Tpo -c -o UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo './'`./tree/UnRootedClusterTree.cpp
In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/../alignment/Alignment.h:42,
                 from ./tree/Tree.h:13,
                 from ./tree/Tree.cpp:10:
./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/EMBLFileParser.Tpo .deps/EMBLFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ClusterTreeOutput.o -MD -MP -MF .deps/ClusterTreeOutput.Tpo -c -o ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo './'`./tree/ClusterTreeOutput.cpp
In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/../alignment/Alignment.h:42,
                 from ./tree/ClusterTree.h:20,
                 from ./tree/ClusterTree.cpp:9:
./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/UPGMAAlgorithm.Tpo .deps/UPGMAAlgorithm.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT RandomGenerator.o -MD -MP -MF .deps/RandomGenerator.Tpo -c -o RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo './'`./tree/RandomGenerator.cpp
mv -f .deps/RootedTreeOutput.Tpo .deps/RootedTreeOutput.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT NJTree.o -MD -MP -MF .deps/NJTree.Tpo -c -o NJTree.o `test -f './tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp
mv -f .deps/RandomGenerator.Tpo .deps/RandomGenerator.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT AlignmentSteps.o -MD -MP -MF .deps/AlignmentSteps.Tpo -c -o AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo './'`./tree/AlignmentSteps.cpp
In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/../alignment/Alignment.h:42,
                 from ./tree/TreeInterface.h:19,
                 from ./tree/TreeInterface.cpp:15:
./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/PearsonFileParser.Tpo .deps/PearsonFileParser.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT InteractiveMenu.o -MD -MP -MF .deps/InteractiveMenu.Tpo -c -o InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo './'`./interface/InteractiveMenu.cpp
In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/../alignment/Alignment.h:42,
                 from ./tree/ClusterTree.h:20,
                 from ./tree/UnRootedClusterTree.h:8,
                 from ./tree/UnRootedClusterTree.cpp:9:
./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./tree/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./tree/../alignment/Alignment.h:42,
                 from ./tree/ClusterTreeOutput.h:11,
                 from ./tree/ClusterTreeOutput.cpp:9:
./tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./interface/../fileInput/../alignment/Alignment.h:42,
                 from ./interface/../fileInput/FileReader.h:12,
                 from ./interface/../Clustal.h:18,
                 from ./interface/InteractiveMenu.h:15,
                 from ./interface/InteractiveMenu.cpp:23:
./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/AlignmentSteps.Tpo .deps/AlignmentSteps.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT CommandLineParser.o -MD -MP -MF .deps/CommandLineParser.Tpo -c -o CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo './'`./interface/CommandLineParser.cpp
mv -f .deps/ClusterTreeOutput.Tpo .deps/ClusterTreeOutput.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT SubMatrix.o -MD -MP -MF .deps/SubMatrix.Tpo -c -o SubMatrix.o `test -f './substitutionMatrix/SubMatrix.cpp' || echo './'`./substitutionMatrix/SubMatrix.cpp
In file included from ./interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./interface/../fileInput/../alignment/Alignment.h:42,
                 from ./interface/../fileInput/FileReader.h:12,
                 from ./interface/../Clustal.h:18,
                 from ./interface/CommandLineParser.h:18,
                 from ./interface/CommandLineParser.cpp:13:
./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./substitutionMatrix/SubMatrix.cpp:15:0:
./substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/Tree.Tpo .deps/Tree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Iteration.o -MD -MP -MF .deps/Iteration.Tpo -c -o Iteration.o `test -f './multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp
mv -f .deps/NJTree.Tpo .deps/NJTree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT MSA.o -MD -MP -MF .deps/MSA.Tpo -c -o MSA.o `test -f './multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/Iteration.h:8,
                 from ./multipleAlign/Iteration.cpp:13:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/ClusterTree.Tpo .deps/ClusterTree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT MyersMillerProfileAlign.o -MD -MP -MF .deps/MyersMillerProfileAlign.Tpo -c -o MyersMillerProfileAlign.o `test -f './multipleAlign/MyersMillerProfileAlign.cpp' || echo './'`./multipleAlign/MyersMillerProfileAlign.cpp
mv -f .deps/TreeInterface.Tpo .deps/TreeInterface.Po
mv -f .deps/UnRootedClusterTree.Tpo .deps/UnRootedClusterTree.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ProfileStandard.o -MD -MP -MF .deps/ProfileStandard.Tpo -c -o ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo './'`./multipleAlign/ProfileStandard.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ProfileWithSub.o -MD -MP -MF .deps/ProfileWithSub.Tpo -c -o ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo './'`./multipleAlign/ProfileWithSub.cpp
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/ProfileBase.h:14,
                 from ./multipleAlign/MSA.h:10,
                 from ./multipleAlign/MSA.cpp:16:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/InteractiveMenu.Tpo .deps/InteractiveMenu.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ProfileBase.o -MD -MP -MF .deps/ProfileBase.Tpo -c -o ProfileBase.o `test -f './multipleAlign/ProfileBase.cpp' || echo './'`./multipleAlign/ProfileBase.cpp
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/ProfileAlignAlgorithm.h:10,
                 from ./multipleAlign/MyersMillerProfileAlign.h:10,
                 from ./multipleAlign/MyersMillerProfileAlign.cpp:10:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/ProfileWithSub.h:9,
                 from ./multipleAlign/ProfileWithSub.cpp:9:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/ProfileStandard.h:9,
                 from ./multipleAlign/ProfileStandard.cpp:9:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/ProfileBase.h:14,
                 from ./multipleAlign/ProfileBase.cpp:9:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/ProfileStandard.Tpo .deps/ProfileStandard.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT LowScoreSegProfile.o -MD -MP -MF .deps/LowScoreSegProfile.Tpo -c -o LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo './'`./multipleAlign/LowScoreSegProfile.cpp
mv -f .deps/ProfileWithSub.Tpo .deps/ProfileWithSub.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT OutputFile.o -MD -MP -MF .deps/OutputFile.Tpo -c -o OutputFile.o `test -f './general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp
In file included from ./multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./multipleAlign/../alignment/Alignment.h:42,
                 from ./multipleAlign/LowScoreSegProfile.h:13,
                 from ./multipleAlign/LowScoreSegProfile.cpp:9:
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/MSA.Tpo .deps/MSA.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT UserParameters.o -MD -MP -MF .deps/UserParameters.Tpo -c -o UserParameters.o `test -f './general/UserParameters.cpp' || echo './'`./general/UserParameters.cpp
mv -f .deps/ProfileBase.Tpo .deps/ProfileBase.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Utility.o -MD -MP -MF .deps/Utility.Tpo -c -o Utility.o `test -f './general/Utility.cpp' || echo './'`./general/Utility.cpp
mv -f .deps/OutputFile.Tpo .deps/OutputFile.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT InvalidCombination.o -MD -MP -MF .deps/InvalidCombination.Tpo -c -o InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo './'`./general/InvalidCombination.cpp
mv -f .deps/SubMatrix.Tpo .deps/SubMatrix.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT DebugLog.o -MD -MP -MF .deps/DebugLog.Tpo -c -o DebugLog.o `test -f './general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp
mv -f .deps/LowScoreSegProfile.Tpo .deps/LowScoreSegProfile.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ClustalWResources.o -MD -MP -MF .deps/ClustalWResources.Tpo -c -o ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo './'`./general/ClustalWResources.cpp
mv -f .deps/InvalidCombination.Tpo .deps/InvalidCombination.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT VectorOutOfRange.o -MD -MP -MF .deps/VectorOutOfRange.Tpo -c -o VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo './'`./general/VectorOutOfRange.cpp
mv -f .deps/Iteration.Tpo .deps/Iteration.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT SymMatrix.o -MD -MP -MF .deps/SymMatrix.Tpo -c -o SymMatrix.o `test -f './general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp
mv -f .deps/DebugLog.Tpo .deps/DebugLog.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Stats.o -MD -MP -MF .deps/Stats.Tpo -c -o Stats.o `test -f './general/Stats.cpp' || echo './'`./general/Stats.cpp
mv -f .deps/VectorOutOfRange.Tpo .deps/VectorOutOfRange.Po
mv -f .deps/SymMatrix.Tpo .deps/SymMatrix.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Help.o -MD -MP -MF .deps/Help.Tpo -c -o Help.o `test -f './Help.cpp' || echo './'`./Help.cpp
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Alignment.o -MD -MP -MF .deps/Alignment.Tpo -c -o Alignment.o `test -f './alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp
mv -f .deps/MyersMillerProfileAlign.Tpo .deps/MyersMillerProfileAlign.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT AlignmentOutput.o -MD -MP -MF .deps/AlignmentOutput.Tpo -c -o AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo './'`./alignment/AlignmentOutput.cpp
mv -f .deps/ClustalWResources.Tpo .deps/ClustalWResources.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT ObjectiveScore.o -MD -MP -MF .deps/ObjectiveScore.Tpo -c -o ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo './'`./alignment/ObjectiveScore.cpp
mv -f .deps/UserParameters.Tpo .deps/UserParameters.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Sequence.o -MD -MP -MF .deps/Sequence.Tpo -c -o Sequence.o `test -f './alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp
In file included from ./general/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./general/../alignment/Alignment.h:42,
                 from ./general/Stats.cpp:15:
./general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/Utility.Tpo .deps/Utility.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT Clustal.o -MD -MP -MF .deps/Clustal.Tpo -c -o Clustal.o `test -f './Clustal.cpp' || echo './'`./Clustal.cpp
In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./alignment/Alignment.h:42,
                 from ./alignment/Alignment.cpp:25:
./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./alignment/ObjectiveScore.h:15,
                 from ./alignment/ObjectiveScore.cpp:10:
./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./alignment/Alignment.h:42,
                 from ./alignment/AlignmentOutput.h:24,
                 from ./alignment/AlignmentOutput.cpp:27:
./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
In file included from ./fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./fileInput/../alignment/Alignment.h:42,
                 from ./fileInput/FileReader.h:12,
                 from ./Clustal.h:18,
                 from ./Clustal.cpp:27:
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/Stats.Tpo .deps/Stats.Po
g++ -DHAVE_CONFIG_H -I.     -g -O2 -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp
mv -f .deps/ObjectiveScore.Tpo .deps/ObjectiveScore.Po
mv -f .deps/Sequence.Tpo .deps/Sequence.Po
In file included from ./alignment/../substitutionMatrix/globalmatrix.h:8:0,
                 from ./alignment/Alignment.h:42,
                 from ./main.cpp:10:
./alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printInFormat(vector<short>& temp, char* name = "tempfile.out");
                                                              ^
./alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings]
         void printVectorToFile(vector<short>& temp, char* name = "tempfile.out");
                                                                  ^
mv -f .deps/CommandLineParser.Tpo .deps/CommandLineParser.Po
mv -f .deps/Help.Tpo .deps/Help.Po
mv -f .deps/main.Tpo .deps/main.Po
mv -f .deps/Alignment.Tpo .deps/Alignment.Po
mv -f .deps/AlignmentOutput.Tpo .deps/AlignmentOutput.Po
mv -f .deps/Clustal.Tpo .deps/Clustal.Po
g++  -g -O2   -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o  
Iteration.o: In function `std::vector<clustalw::Sequence, std::allocator<clustalw::Sequence> >::operator=(std::vector<clustalw::Sequence, std::allocator<clustalw::Sequence> > const&)':
/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
make[3]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[2]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'
make[1]: Nothing to be done for `all-am'.
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'
Making install in m4
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
make[2]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
make[2]: Nothing to be done for `install-exec-am'.
test -z "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/aclocal" || /bin/mkdir -p "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/aclocal"
make[2]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/m4'
Making install in src
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[2]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[3]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
test -z "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin" || /bin/mkdir -p "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin"
  /bin/install -c clustalw2 '/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin'
make[3]: Nothing to be done for `install-data-am'.
make[3]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[2]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1/src'
make[1]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'
make[2]: Entering directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'
make[1]: Leaving directory `/net/nfs1/netscr/pemsley/autobuild/hal.lmb.internal_2021-07-26__T22_17_23/clustalw-2.1'