testing with python unittest
testing with python unittest
currently we are here:
/netscr/pemsley/autobuild/hal.lmb.internal_2020-04-02__T08_21_02/coot-0.8.9.3-pre
/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin/coot --no-graphics --script python-tests/coot_unittest.py
coot-script with PATH /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin:/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin:/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin:/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2/bin:/lmb/home/pemsley/bin:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/arp_warp_7.5/bin/bin-x86_64-Linux:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/etc:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/bin:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/share/xia2/Applications:/usr/bin:/bin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc and PYTHON python
/usr/bin/rsvg-convert
/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/bin/coot: line 273: otool: command not found
::: DYLD_FALLBACK_LIBRARY_PATH is
INFO:: Using Standard CCP4 Refmac dictionary from CLIBD_MON: /lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/lib/data/monomers/
INFO:: Reading coordinate file: /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/coot/standard-residues.pdb
 PDB file /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
initalize graphics molecules...done.
(filter-fileselection-filenames-state)
(get-active-map-drag-flag)
(use-graphics-interface-state)
INFO:: coot.py imported
Running python script /lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/coot/coot_load_modules.py
Traceback (most recent call last):
  File "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/coot/coot_load_modules.py", line 189, in <module>
    execfile(filename)
  File "/lmb/home/pemsley/autobuild/Linux-hal.lmb.internal-pre-release-gtk2-python/lib/python2.7/site-packages/coot/redefine_functions.py", line 93, in <module>
    twisted_trans_peptides = twisted_trans_peptides_py
NameError: name 'twisted_trans_peptides_py' is not defined
ERROR:: couldn't load  redefine_functions.py
(stereo-mode-state)
(stereo-mode-state)
(save-state)
Guile 1.8.8
Copyright (c) 1995, 1996, 1997, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008 Free Software Foundation
Guile may be distributed under the terms of the GNU General Public Licence;
certain other uses are permitted as well.  For details, see the file
`COPYING', which is included in the Guile distribution.
There is no warranty, to the extent permitted by law.
catching the crash log:

(coot-crash-catcher.scm:1627196): Gtk-WARNING **: 09:25:10.006: cannot open display: 
test_coot_python: coot test failed