This is script version 5.26 for Gtk2 Sat Sep 5 04:40:09 BST 2015 currently architecture is x86_64 dist is package fedora-release is not installed dist is package redhat-release is not installed dist is redhat-release-workstation systype: x86_64-rhel-6 update_libtool: 1 update_config_guess_sub: 1 AUTOBUILD_BUILD=/home/emsley/autobuild/building AUTOBUILD_INSTALLED=/home/emsley/autobuild/Linux-pc AUTOBUILD_SOURCES=/home/emsley/autobuild/building/sources BASH=/bin/bash BASHOPTS=cmdhist:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=([0]="1") BASH_ARGV=([0]="/home/emsley/Projects/coot/git/coot/build-it") BASH_CMDS=() BASH_LINENO=([0]="19" [1]="0") BASH_SOURCE=([0]="/home/emsley/Projects/coot/git/coot/build-it" [1]="autobuild") BASH_VERSINFO=([0]="4" [1]="1" [2]="2" [3]="1" [4]="release" [5]="x86_64-redhat-linux-gnu") BASH_VERSION='4.1.2(1)-release' BINARY_INSTALL_CMD=www-placement CBIN=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/bin CCP4=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5 CCP4I_TCLTK=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/bin CCP4I_TOP=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/share/ccp4i CCP4_HELPDIR=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/help/ CCP4_MASTER=/home/emsley/ccp4 CCP4_OPEN=UNKNOWN CCP4_SCR=/tmp/emsley CETC=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/etc CEXAM=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/examples CHTML=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/html CINCL=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/include CLIB=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/lib CLIBD=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/lib/data CLIBD_MON=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/lib/data/monomers/ CRANK=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/share/ccp4i/crank DIRSTACK=() ENABLE_GUILE_COOT=yes ENABLE_PYTHON_COOT=yes EUID=500 GFORTRAN_UNBUFFERED_PRECONNECTED=Y GROUPS=() HOME=/home/emsley HOST=pc HOSTNAME=pc HOSTTYPE=x86_64 IFS=$' \t\n' LOGNAME=emsley LOGS=/home/emsley/public_html/build-logs/Linux-pc MACHTYPE=x86_64-redhat-linux-gnu MMCIFDIC=/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/lib/ccp4/cif_mmdic.lib NIGHTLY_DEST_DIR=/home/emsley/public_html/software/binaries/nightlies/pre-release OPTERR=1 OPTIND=1 OS=Linux OSTYPE=linux-gnu PATH=/home/emsley/autobuild/Linux-pc-pre-release-gtk2/bin:/home/emsley/bin:/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/etc:/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/bin:/home/emsley/ccp4/ccp4-6.5/ccp4-6.5/share/xia2/Applications:/usr/bin:/bin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc PIPESTATUS=([0]="1") PPID=19718 PS4='+ ' PWD=/home/emsley/autobuild SHELL=/bin/sh SHELLOPTS=braceexpand:hashall:interactive-comments SHLVL=2 STABLE_DEST_DIR=/home/emsley/public_html/software/binaries/stable TERM=dumb UID=500 USER=emsley _=']' arch=x86_64 architecture=x86_64 build_coot_prerelease=1 build_type=gtk2-python dist=redhat-release-workstation dist_name=redhat dist_ver=6Workstation do_nightlies=1 fallback_coot_version=coot-0.4 have_malloc=1 i=redhat-release-workstation no_proxy=.corp.net.com processor=GNU/Linux proxy_host=myproxy.com proxy_port=800 publish=transfer-to-web-server.sh publish_logs=publish-logs.sh run_tests=true script_version=5.26 shared_lib_ext=so shared_static_flag=--disable-shared specs=/home/emsley/autobuild/build-scripts/pc-specials systype=x86_64-rhel-6 update_config_guess_sub=1 update_libtool=1 use_proxy= fixup_libcurl () { sed s,-L/usr/lib,, curl-config > curl-config.tmp; mv curl-config.tmp curl-config; sed s,-L/usr/lib,, lib/libcurl.la > lib/libcurl.la.tmp; mv lib/libcurl.la.tmp lib/libcurl.la } make_tar () { echo in make_tar args: $1 $2; echo in make_tar: in dir: $PWD; tar_dir=$1; tar_file_name=$2; cd $install_top_dir/..; if [ -e $tar_dir ]; then echo taring nightly... from $tar_dir to $tar_file_name; tar czf $tar_file_name $tar_dir; status=$?; if [ "$status" != 0 ]; then echo ERROR:: tar czf $tar_file_name $tar_dir failed.; echo ERROR:: while in directory $(pwd); echo ERROR:: tar failed > $tar_file_name.md5sum; rm $tar_file_name; else md5sum $tar_file_name > $tar_file_name.md5sum; /bin/ls -l $tar_file_name >> $tar_file_name.md5sum; echo done tar successfully.; fi; else echo ERROR:: tar target directory $tar_dir does not exist.; fi } mkdir_maybe () { dir=$1; if [ ! -e "$dir" ]; then mkdir $dir; fi } my_exit () { exit_arg=$1; shift; extra_args=$*; echo fail-build $extra_args > $LOGS/$build_type-build-status; if [ -e $LOGS/$build_type-test-status ]; then rm $LOGS/$build_type-test-status; fi; exit $exit_arg } post_install_slim () { echo we are slimming directory $1; fat_dir="$1"; cleaned_dir="$2"; clear_type="$3"; echo fat_dir is $fat_dir; echo clear_type is $clear_type; echo cleaned_dir is $cleaned_dir; mkdir_maybe $cleaned_dir; mkdir_maybe $cleaned_dir/bin; mkdir_maybe $cleaned_dir/lib; if [ "$ENABLE_PYTHON_COOT" = yes ]; then mkdir_maybe $cleaned_dir/include; mkdir_maybe $cleaned_dir/include/$python_version; fi; lib_sos=`cd $fat_dir && ls -1 lib/lib*.so*`; lib_as=`cd $fat_dir && ls -1 lib/lib*.a`; if [ "$clear_type" = "clear-dynamic" ]; then keep_lib_archs="$lib_as"; fi; if [ "$clear_type" = "clear-static" ]; then keep_lib_archs="$lib_sos"; fi; file_list="etc info man share libexec libexec/coot-bin bin/coot bin/findwaters bin/findwaters-real bin/findligand bin/findligand-real bin/guile bin/density-score-by-residue bin/density-score-by-residue-real bin/coot.available-comp-id bin/coot.compare-dictionaries bin/coot.dictionary-bond-distributions bin/coot.make-shelx-restraints bin/curl $keep_lib_archs"; if [ "$ENABLE_PYTHON_COOT" = yes ]; then file_list="$file_list html lib/$python_version include/$python_version"; fi; echo rsyncing...; for file in $file_list; do dn=$(dirname $file); if [ -e $fat_dir/$file ]; then rsync -axr $fat_dir/$file $cleaned_dir/$dn; else echo $fat_dir/$file does not exist; fi; done; echo done rsyncing. } setup_ccp4 () { if test "$OS" = Linux; then setup_file=/y/programs/xtal/ccp4-6.0.2/ccp4-6.0.2/include/ccp4.setup-sh; if test -e $setup_file; then . $setup_file; else if [ "$systype" = x86_64-centos-6 ]; then setup_file=/home/emsley/ccp4/setup-scripts/sh/ccp4.setup; else if [ "$systype" = x86_64-centos-5 ]; then setup_file=/home/emsley/ccp4/ccp4-6.2.0/include/ccp4.setup-sh; else setup_file=setup-ccp4; fi; fi; if test -e $setup_file; then echo evaluating $setup_file; . $setup_file; else echo WARNING:: ccp4 setup file $setup_file does not exist.; fi; fi; fi; if test "$OS" = Darwin; then . /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh; fi } ssh_copy () { if [ "$do_ssh_copy" = true ]; then dir=public_html/software/binaries/nightlies/pre-release/; echo ssh_copy copying over files using $HOME/bin/sput-with-dir $bin_tar_file $dir; $HOME/bin/sput-with-dir $bin_tar_file $dir; if [ -e $bin_tar_file.md5sum ]; then $HOME/bin/sput-with-dir $bin_tar_file.md5sum dir; fi; else echo Not ssh copying file to York, $domainname; fi } ssh_copy_logs_to_biop () { local_log_dir=$1; target_dir=$2; if [ "$do_ssh_biop_copy" = true ]; then echo copying over log files to Biop...; target_dir=$2; $HOME/bin/sput-with-dir $local_log_dir $target_dir; else echo Not ssh copying log files to biop; fi } ssh_copy_to_biop () { bin_tar_file=$1; if [ "$do_ssh_biop_copy" = true ]; then target_dir=public_html/coot/software/binaries/pre-releases/; echo copying over files to Biop: $HOME/bin/sput-with-dir $bin_tar_file $target_dir; $HOME/bin/sput-with-dir $bin_tar_file $target_dir; if [ -e $bin_tar_file.md5sum ]; then echo and also: $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; fi; else echo Not ssh copying file to biop; fi } test_coot () { echo testing with greg; echo testing with greg 1>&2; echo currently we are here:; pwd; date; if [ "$1" != "" ]; then coot_binary=$1; else coot_binary=$install_top_dir/libexec/coot-bin; fi; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; if [ ! -d greg-tests ]; then echo greg-tests dir missing in this directory:; pwd; return 1; fi; setup_ccp4; cat > command-line-greg.scm <&2; echo currently we are here:; pwd; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; echo $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; status=$?; if [ $status = 0 ]; then echo test_coot_python: coot test passed; return 0; else echo test_coot_python: coot test failed; return 1; fi; else return 1; fi } INFO:: MACHTYPE is x86_64-redhat-linux-gnu INFO:: systype is x86_64-rhel-6 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-3) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. gcc version: gcc-4.4.7 need_guile_unused_values_patch is Testing version of make GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu using 4 processors in compilation MAKE set to make -j4 testing for patch testing awk type (prefer GNU awk) GNU Awk 3.1.7 Copyright (C) 1989, 1991-2009 Free Software Foundation. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/. good, you have an awk from GNU. Date: 2015-09-05__T03_40_09 checking wget which wget /usr/bin/wget pre_release_files_html /home/emsley/autobuild/building/sources/index-pre-release.html coot_version_tmp : coot-0.8.3-pre-revision-5621 : clever coot_version succeeded, setting coot_version to coot-0.8.3-pre-revision-5621 from extraction INFO:: building pre-release and coot_version_pre is coot-0.8.3-pre-revision-5621 DEBUG:: set coot_source_tar_file to http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/pre-releases/coot-0.8.3-pre-revision-5621.tar.gz INFO:: set the target destination for binary tar file (BINARY_TAR_DEST_DIR) to /home/emsley/public_html/software/binaries/nightlies/pre-release INFO:: binary tar destination dir: BINARY_TAR_DEST_DIR is /home/emsley/public_html/software/binaries/nightlies/pre-release coot_version_pre is coot-0.8.3-pre-revision-5621 build_coot_prerelease: 1 release_server_dir http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases coot_version coot-0.8.3-pre-revision-5621 testing for install_top_dir: /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python INFO:: /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python exists already. done testing for /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python ccp4_system_type linux installation has fftw installation has curl/libcurl installation has libidn devel pkg-config is /usr/bin/pkg-config pkg-config is new enough 0.23 COOT_CCP4_PACKAGES PKG_CONFIG_PATH is now /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/lib/pkgconfig system/installation has freetype2 glib is not up to date, rebuild glib - maybe. :::::::: gtk version is at least 2.10 :::::::: gtk version is 2.18.9 gtk is new enough for guile-gtk installation has Freeglut installation has libtool installation has gmp installation has readline atempting to run installed guile-config (this may fail, that's OK). installation has guile installation has guile-gui installation has guile-lib testing for greg using /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/bin/guile guile greg status 0 installation has greg installation has python, Python 2.7.8 /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/bin/python installation has pygobject pygtk demo exists, no build pygtk /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python system/installation has the GSL version 1.16 build_gsl is 0 GSL is up to date INFO:: found /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/include/gtkglext-1.0/gdk/glext/glext.h installation has gtkglext installation has guile-gtk guile-gtk should not be built 2.26.0 goocanvas: recent enough gtk+ version goocanvas: recent enough cairo version goocanvas: goocanvas_args set to --with-goocanvas-prefix=/home/emsley/autobuild/Linux-pc-pre-release-gtk2-python SSM is found. INFO:: shall we build clipper: mmdb not to be built INFO:: shall we build clipper: fftw not to be built /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h exist /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/include/clipper/contrib/sfscale.h exist not building libccp4: not building mmdb: not building ssm: not building fftw: not building clipper: not building freeglut: not building gtkglext: not building python: not building pygobject: not building pytgtk not building gmp: not building libtool: not building readline: not building guile: not building greg: not building guile-gtk: not building guile-gui: not building guile-lib not building libidn: not building curl: not building gsl: BUILDING coot: version coot-0.8.3-pre-revision-5621, guile=yes, python=yes using coot version coot-0.8.3-pre-revision-5621 15408 -rw-r--r--. 1 emsley emsley 15775462 Sep 5 03:55 /home/emsley/autobuild/building/sources/coot-0.8.3-pre-revision-5621.tar.gz good /home/emsley/autobuild/building/sources/coot-0.8.3-pre-revision-5621.tar.gz exists Sat Sep 5 04:40:10 BST 2015 /home/emsley/autobuild/building/pc_2015-09-05__T03_40_09 BUILDING coot: version coot-0.8.3-pre-revision-5621, python=yes coot build was good. done coot build. INFO:: installation has refmac monomer library INFO:: installation has reference structures we are slimming directory /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python fat_dir is /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python clear_type is clear-static cleaned_dir is /home/emsley/autobuild/coot-Linux-x86_64-rhel-6-gtk2-python rsyncing... /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/etc does not exist /home/emsley/autobuild/Linux-pc-pre-release-gtk2-python/html does not exist done rsyncing. running tests: ======================== first coot test passed ========----============ in make_tar args: coot-Linux-x86_64-rhel-6-gtk2-python /home/emsley/public_html/software/binaries/nightlies/pre-release/holding/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz in make_tar: in dir: /home/emsley/autobuild/building/pc_2015-09-05__T03_40_09/coot-0.8.3-pre taring nightly... from coot-Linux-x86_64-rhel-6-gtk2-python to /home/emsley/public_html/software/binaries/nightlies/pre-release/holding/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz done tar successfully. cding into coot-Linux-x86_64-rhel-6-gtk2-python from /home/emsley/autobuild/building/pc_2015-09-05__T03_40_09/test-tar ln -s ../../coot-0.8.3-pre/greg-tests . second coot test... ======================== second coot test passed ======================== INFO:: in /home/emsley/autobuild/building/pc_2015-09-05__T03_40_09/coot-0.8.3-pre and about to copy over README and RELEASE-NOTES to /home/emsley/public_html/software/binaries/nightlies/pre-release about to publish files: transfer-to-web-server.sh /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz file is /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz dest_dir is coot/binaries/pre-releases no server check calling ftp_it /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz transfer-to-web-server.sh /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz.md5sum file is /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz.md5sum dest_dir is coot/binaries/pre-releases no server check calling ftp_it /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz.md5sum coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /home/emsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz.md5sum coot-0.8.3-pre-revision-5621-binary-Linux-x86_64-rhel-6-python-gtk2.tar.gz.md5sum transfer-to-web-server.sh /home/emsley/public_html/software/binaries/nightlies/pre-release/type-binary-Linux-x86_64-rhel-6-python-gtk2-latest.txt file is /home/emsley/public_html/software/binaries/nightlies/pre-release/type-binary-Linux-x86_64-rhel-6-python-gtk2-latest.txt dest_dir is coot/binaries/pre-releases no server check calling ftp_it /home/emsley/public_html/software/binaries/nightlies/pre-release/type-binary-Linux-x86_64-rhel-6-python-gtk2-latest.txt coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /home/emsley/public_html/software/binaries/nightlies/pre-release/type-binary-Linux-x86_64-rhel-6-python-gtk2-latest.txt type-binary-Linux-x86_64-rhel-6-python-gtk2-latest.txt transfer-to-web-server.sh --no-server-check ChangeLog file is ChangeLog dest_dir is coot/binaries/pre-releases no server check calling ftp_it ChangeLog coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put ChangeLog ChangeLog transfer-to-web-server.sh --no-server-check coot-README file is coot-README dest_dir is coot/binaries/pre-releases no server check calling ftp_it coot-README coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put coot-README coot-README transfer-to-web-server.sh --no-server-check /home/emsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES file is /home/emsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES dest_dir is coot/binaries/pre-releases no server check calling ftp_it /home/emsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /home/emsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES PRE-RELEASE-NOTES done copy of README and RELEASE-NOTES file is /home/emsley/public_html/build-logs/Linux-pc/coot-download/* dest_dir is coot/build-logs/Linux-pc/coot-download no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/coot-download/* coot/build-logs/Linux-pc/coot-download will cd to coot/build-logs/Linux-pc/coot-download will put /home/emsley/public_html/build-logs/Linux-pc/coot-download/* 0-coot-history.py 0-coot-history.scm 0-coot.state.py 0-coot.state.scm 2yie-mutated.pdb ABOUT-NLS AUTHORS BUGS COPYING ChangeLog INSTALL Makefile Makefile.am Makefile.in NEWS README RELEASE-NOTES TODO acconfig.h aclocal.m4 analysis angles auto-waters.pdb autogen.sh auxil build ccp4mg-utils colours.def command-line-greg.scm compat config.guess config.log config.status config.sub configure configure.ac coords coot-README coot-backup coot-ccp4 coot-download coot-surface coot-test-ala.cif coot-utils coot.appdata.xml coot.desktop cootaneer cootilus cootrc cootrc.template copyright-disclaimer.txt count-loc data db-main db-mainchain.pdb density-contour depcomp doc fix-cif-loops.awk function-notes geometry goograph greg-tests greg-tests.dbg greg-tests.log guile.supp high-res his.pdb ideal ifdef-for-create-aboutdialog.awk install-sh intltool-extract.in intltool-merge.in intltool-update.in lbg libgtkgraph libtool lidia-core ligand ltmain.sh macros make-patches make-scheme-tar mapview.glade mini-mol missing mkinstalldirs mtrix-to-ncs-matrix.awk mutated.pdb my.supp new-horma.ins pdb-templates pixmaps post-ins-change.pdb protein_db py-compile pyrogen python python-tests rama-data rcrane regression-test-terminal-residue.pdb rnase.ins rnase_zip_test.pdb.gz scheme skeleton src standard-residues.pdb surface sym-merged.pdb syminfo.lib test-1.pdb test-2.pdb test-3hfl.map test-TER-OXT-added.pdb tmp-fixed-cis.pdb tmp-with-new-water.pdb tw utils waters-moved-failure.pdb windows coot/build-logs/Linux-pc/coot-download: No such file or directory. file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build-status dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build-status coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build-status gtk2-python-build-status file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build.log dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build.log coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-build.log gtk2-python-build.log file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/01-libccp4.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/01-libccp4.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/01-libccp4.txt 01-libccp4.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-mmdb.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-mmdb.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-mmdb.txt 02-mmdb.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-ssm.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-ssm.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/02-ssm.txt 02-ssm.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/03-fftw.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/03-fftw.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/03-fftw.txt 03-fftw.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/04-clipper.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/04-clipper.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/04-clipper.txt 04-clipper.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/05-freeglut.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/05-freeglut.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/05-freeglut.txt 05-freeglut.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-goocanvas.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-goocanvas.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-goocanvas.txt 06-pre-goocanvas.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-gtkglext.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-gtkglext.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/06-pre-gtkglext.txt 06-pre-gtkglext.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygobject.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygobject.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygobject.txt 07-pygobject.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygtk.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygtk.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-pygtk.txt 07-pygtk.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-python.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-python.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/07-python.txt 07-python.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/08-pre-gmp.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/08-pre-gmp.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/08-pre-gmp.txt 08-pre-gmp.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/09-pre-libtool.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/09-pre-libtool.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/09-pre-libtool.txt 09-pre-libtool.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/10-pre-readline.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/10-pre-readline.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/10-pre-readline.txt 10-pre-readline.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11-guile.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11-guile.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11-guile.txt 11-guile.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11c-greg.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11c-greg.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/11c-greg.txt 11c-greg.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/12-guile-gtk.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/12-guile-gtk.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/12-guile-gtk.txt 12-guile-gtk.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/13-guile-gui.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/13-guile-gui.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/13-guile-gui.txt 13-guile-gui.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/14-guile-lib.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/14-guile-lib.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/14-guile-lib.txt 14-guile-lib.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-a-libidn.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-a-libidn.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-a-libidn.txt 15-a-libidn.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-b-curl.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-b-curl.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-b-curl.txt 15-b-curl.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-gsl.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-gsl.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/15-gsl.txt 15-gsl.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/16-coot.txt dest_dir is coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/16-coot.txt coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will cd to coot/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7 will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-gcc-4.4.7_and_g++-4.4.7/16-coot.txt 16-coot.txt file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-2.log dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-2.log coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-2.log gtk2-python-test-2.log file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-python.log dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-python.log coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-python.log gtk2-python-test-python.log file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-status dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-status coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test-status gtk2-python-test-status file is /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test.log dest_dir is coot/build-logs/Linux-pc no server check calling ftp_it /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test.log coot/build-logs/Linux-pc will cd to coot/build-logs/Linux-pc will put /home/emsley/public_html/build-logs/Linux-pc/gtk2-python-test.log gtk2-python-test.log finished.