Tue Dec 27 04:00:02 GMT 2016 currently architecture is x86_64 dist is package fedora-release is not installed dist is package redhat-release is not installed dist is package redhat-release-workstation is not installed dist is centos-release systype: x86_64-centos-5 update_libtool: 1 update_config_guess_sub: 1 AUTOBUILD_BUILD=/lmb/home/pemsley/autobuild/building AUTOBUILD_INSTALLED=/lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal AUTOBUILD_SOURCES=/lmb/home/pemsley/autobuild/building/sources BASH=/bin/bash BASH_ARGC=([0]="1") BASH_ARGV=([0]="build-it") BASH_LINENO=([0]="22" [1]="0") BASH_SOURCE=([0]="build-it" [1]="autobuild") BASH_VERSINFO=([0]="3" [1]="2" [2]="25" [3]="1" [4]="release" [5]="x86_64-redhat-linux-gnu") BASH_VERSION='3.2.25(1)-release' BINARY_INSTALL_CMD=www-placement CBIN=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/bin CCP4=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5 CCP4I_TCLTK=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/bin CCP4I_TOP=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/share/ccp4i CCP4_HELPDIR=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/help/ CCP4_MASTER=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2 CCP4_OPEN=UNKNOWN CCP4_SCR=/tmp/pemsley CETC=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/etc CEXAM=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/examples CHTML=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/html CINCL=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/include CLIB=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/lib CLIBD=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/lib/data CLIBD_MON=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/lib/data/monomers/ CRANK=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/share/ccp4i/crank DIRSTACK=() ENABLE_GUILE_COOT=yes ENABLE_PYTHON_COOT=yes EUID=25202 GFORTRAN_UNBUFFERED_PRECONNECTED=Y GROUPS=() HOME=/lmb/home/pemsley HOST=pcterm37.lmb.internal HOSTNAME=pcterm37.lmb.internal HOSTTYPE=x86_64 IFS=$' \t\n' LOGNAME=pemsley LOGS=/lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal MACHTYPE=x86_64-redhat-linux-gnu MMCIFDIC=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/lib/ccp4/cif_mmdic.lib NIGHTLY_DEST_DIR=/lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release OPTERR=1 OPTIND=1 OS=Linux OSTYPE=linux-gnu PATH=/lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2/bin:/lmb/home/pemsley/bin:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/arp_warp_7.5/bin/bin-x86_64-Linux:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/etc:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/bin:/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/ccp4-6.5/share/xia2/Applications:/usr/bin:/bin:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc PIPESTATUS=([0]="1") PPID=14303 PS4='+ ' PWD=/lmb/home/pemsley/autobuild SHELL=/bin/sh SHELLOPTS=braceexpand:hashall:interactive-comments SHLVL=2 STABLE_DEST_DIR=/lmb/home/pemsley/public_html/software/binaries/stable TERM=dumb UID=25202 USER=pemsley _=']' arch=x86_64 architecture=x86_64 arpwarphome=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/arp_warp_7.5 build_coot_prerelease=1 build_type=gtk2-python dist=centos-release dist_name=centos dist_ver=5 do_nightlies=1 fallback_coot_version=coot-0.4 have_malloc=1 i=centos-release identifier=x86_64-Linux nameprocessor=x86_64 namesystem=Linux no_proxy=.corp.net.com processor=GNU/Linux proxy_host=myproxy.com proxy_port=800 publish=transfer-to-web-server.sh publish_logs=publish-logs.sh run_tests=true script_version=5.26 shared_lib_ext=so shared_static_flag=--disable-shared specs=/lmb/home/pemsley/autobuild/build-scripts/pcterm37.lmb.internal-specials systype=x86_64-centos-5 testccp=0 update_config_guess_sub=1 update_libtool=1 use_proxy= warpbin=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/arp_warp_7.5/bin/bin-x86_64-Linux warpdoc=/lmb/home/public/xtal/CCP4/ccp4-64/ccp4-6.5-i2/arp_warp_7.5/manual fixup_libcurl () { sed s,-L/usr/lib,, curl-config > curl-config.tmp; mv curl-config.tmp curl-config; sed s,-L/usr/lib,, lib/libcurl.la > lib/libcurl.la.tmp; mv lib/libcurl.la.tmp lib/libcurl.la } make_tar () { echo in make_tar args: $1 $2; echo in make_tar: in dir: $PWD; tar_dir=$1; tar_file_name=$2; cd $install_top_dir/..; if [ -e $tar_dir ]; then echo taring nightly... from $tar_dir to $tar_file_name; tar czf $tar_file_name $tar_dir; status=$?; if [ "$status" != 0 ]; then echo ERROR:: tar czf $tar_file_name $tar_dir failed.; echo ERROR:: while in directory $(pwd); echo ERROR:: tar failed > $tar_file_name.md5sum; rm $tar_file_name; else md5sum $tar_file_name > $tar_file_name.md5sum; /bin/ls -l $tar_file_name >> $tar_file_name.md5sum; echo done tar successfully.; fi; else echo ERROR:: tar target directory $tar_dir does not exist.; fi } mkdir_maybe () { dir=$1; if [ ! -e "$dir" ]; then mkdir $dir; fi } my_exit () { exit_arg=$1; shift; extra_args=$*; echo fail-build $extra_args > $LOGS/$build-status; if [ -e $LOGS/$test-status ]; then rm $LOGS/$test-status; fi; exit $exit_arg } post_install_slim () { echo we are slimming directory $1; fat_dir="$1"; cleaned_dir="$2"; clear_type="$3"; echo fat_dir is $fat_dir; echo clear_type is $clear_type; echo cleaned_dir is $cleaned_dir; mkdir_maybe $cleaned_dir; mkdir_maybe $cleaned_dir/bin; mkdir_maybe $cleaned_dir/lib; if [ "$ENABLE_PYTHON_COOT" = yes ]; then mkdir_maybe $cleaned_dir/include; mkdir_maybe $cleaned_dir/include/$python_version; fi; lib_sos=`cd $fat_dir && ls -1 lib/lib*.so*`; lib_as=`cd $fat_dir && ls -1 lib/lib*.a`; if [ "$clear_type" = "clear-dynamic" ]; then keep_lib_archs="$lib_as"; fi; if [ "$clear_type" = "clear-static" ]; then keep_lib_archs="$lib_sos"; fi; file_list="etc info man share libexec libexec/coot-bin libexec/findwaters-bin libexec/findligand-bin libexec/mini-rsr-bin libexec/density-score-by-residue-bin bin/coot bin/findwaters bin/findligand bin/guile bin/coot-density-score-by-residue bin/coot-available-comp-id bin/coot-compare-dictionaries bin/coot-dictionary-bond-distributions bin/coot-make-shelx-restraints bin/curl $keep_lib_archs"; if [ "$ENABLE_PYTHON_COOT" = yes ]; then file_list="$file_list html lib/$python_version include/$python_version"; fi; echo rsyncing...; for file in $file_list; do dn=$(dirname $file); if [ -e $fat_dir/$file ]; then rsync -axr $fat_dir/$file $cleaned_dir/$dn; else echo $fat_dir/$file does not exist; fi; done; echo done rsyncing. } setup_ccp4 () { if test "$OS" = Linux; then setup_file=/y/programs/xtal/ccp4-6.0.2/ccp4-6.0.2/include/ccp4.setup-sh; if test -e $setup_file; then . $setup_file; else if [ "$systype" = x86_64-centos-6 ]; then setup_file=/home/emsley/ccp4/setup-scripts/sh/ccp4.setup; else if [ "$systype" = x86_64-centos-5 ]; then setup_file=/home/emsley/ccp4/ccp4-6.2.0/include/ccp4.setup-sh; else setup_file=setup-ccp4; fi; fi; if test -e $setup_file; then echo evaluating $setup_file; . $setup_file; else echo WARNING:: ccp4 setup file $setup_file does not exist.; fi; fi; fi; if test "$OS" = Darwin; then . /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh; fi } ssh_copy () { if [ "$do_ssh_copy" = true ]; then dir=public_html/software/binaries/nightlies/pre-release/; echo ssh_copy copying over files using $HOME/bin/sput-with-dir $bin_tar_file $dir; $HOME/bin/sput-with-dir $bin_tar_file $dir; if [ -e $bin_tar_file.md5sum ]; then $HOME/bin/sput-with-dir $bin_tar_file.md5sum dir; fi; else echo Not ssh copying file to York, $domainname; fi } ssh_copy_logs_to_biop () { local_log_dir=$1; target_dir=$2; if [ "$do_ssh_biop_copy" = true ]; then echo copying over log files to Biop...; target_dir=$2; $HOME/bin/sput-with-dir $local_log_dir $target_dir; else echo Not ssh copying log files to biop; fi } ssh_copy_to_biop () { bin_tar_file=$1; if [ "$do_ssh_biop_copy" = true ]; then target_dir=public_html/coot/software/binaries/pre-releases/; echo copying over files to Biop: $HOME/bin/sput-with-dir $bin_tar_file $target_dir; $HOME/bin/sput-with-dir $bin_tar_file $target_dir; if [ -e $bin_tar_file.md5sum ]; then echo and also: $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir; fi; else echo Not ssh copying file to biop; fi } test_coot () { echo testing with greg; echo testing with greg 1>&2; echo currently we are here:; pwd; date; if [ "$1" != "" ]; then coot_binary=$1; else coot_binary=$install_top_dir/libexec/coot-bin; fi; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; if [ ! -d greg-tests ]; then echo greg-tests dir missing in this directory:; pwd; return 1; fi; setup_ccp4; cat > command-line-greg.scm <&2; echo currently we are here:; pwd; if test "$run_tests" = true; then COOT_PYTHON_DIR=$install_top_dir/share/coot/python; PYTHONPATH=$COOT_PYTHON_DIR; PYTHONHOME=$install_top_dir; export COOT_PYTHON_DIR; export PYTHONPATH; export PYTHONHOME; echo $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py; status=$?; if [ $status = 0 ]; then echo test_coot_python: coot test passed; return 0; else echo test_coot_python: coot test failed; return 1; fi; else return 1; fi } INFO:: MACHTYPE is x86_64-redhat-linux-gnu INFO:: systype is x86_64-centos-5 g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-54) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. gcc version: gcc-4.1.2 need_guile_unused_values_patch is Testing version of make GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu using 2 processors in compilation MAKE set to make -j2 testing for patch testing awk type (prefer GNU awk) GNU Awk 3.1.5 Copyright (C) 1989, 1991-2005 Free Software Foundation. This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. good, you have an awk from GNU. Date: 2016-12-27__T04_00_02 checking wget which wget /usr/bin/wget pre_release_files_html /lmb/home/pemsley/autobuild/building/sources/index-pre-release.html coot_version_tmp : coot-0.8.8-pre-revision-6506 : clever coot_version succeeded, setting coot_version to coot-0.8.8-pre-revision-6506 from extraction debug:: wget -P /lmb/home/pemsley/autobuild/building/sources -O /lmb/home/pemsley/autobuild/building/sources/index.html -o /lmb/home/pemsley/autobuild/building/sources/wget-e.s.p.log http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/pre-releases/ INFO:: building pre-release and coot_version_pre is coot-0.8.8-pre-revision-6506 DEBUG:: set coot_source_tar_file to http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/pre-releases/coot-0.8.8-pre-revision-6506.tar.gz INFO:: set the target destination for binary tar file (BINARY_TAR_DEST_DIR) to /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release INFO:: binary tar destination dir: BINARY_TAR_DEST_DIR is /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release coot_version_pre is coot-0.8.8-pre-revision-6506 build_coot_prerelease: 1 release_server_dir http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases coot_version coot-0.8.8-pre-revision-6506 testing for install_top_dir: /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python INFO:: /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python exists already. done testing for /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python ccp4_system_type linux installation has fftw installation has curl/libcurl installation has libidn devel pkg-config is /usr/bin/pkg-config pkg-config is new enough 0.21 COOT_CCP4_PACKAGES PKG_CONFIG_PATH is now /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/lib/pkgconfig system/installation has freetype2 glib is not up to date, rebuild glib - maybe. :::::::: gtk version is at least 2.10 :::::::: gtk version is 2.10.4 gtk is new enough for guile-gtk installation has Freeglut installation has libtool installation has gmp installation has readline atempting to run installed guile-config (this may fail, that's OK). installation has guile installation has guile-gui installation has guile-lib testing for greg using /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/bin/guile guile greg status 0 installation has greg installation has python, Python 2.7.12 /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/bin/python installation has pygobject pygtk demo exists, no build pygtk /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python system/installation has the GSL version 1.16 build_gsl is 0 GSL is up to date INFO:: found /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/include/gtkglext-1.0/gdk/glext/glext.h installation has gtkglext installation has guile-gtk guile-gtk should not be built 2.14.0 goocanvas: gtk+-2.0 too old. Goocanvas needs 2.12 or later. You have: 2.10.4 goocanvas: goocanvas_args set to SSM is found. INFO:: shall we build clipper: mmdb not to be built INFO:: shall we build clipper: fftw not to be built /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h exist /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/include/clipper/contrib/sfscale.h exist not building libccp4: not building mmdb: not building ssm: not building fftw: not building clipper: not building freeglut: not building gtkglext: not building python: not building pygobject: not building pytgtk not building gmp: not building libtool: not building readline: not building guile: not building greg: not building guile-gtk: not building guile-gui: not building guile-lib not building libidn: not building curl: not building gsl: BUILDING coot: version coot-0.8.8-pre-revision-6506, guile=yes, python=yes using coot version coot-0.8.8-pre-revision-6506 18480 -rw-r--r-- 1 pemsley pemsley 18865832 Nov 15 07:17 /lmb/home/pemsley/autobuild/building/sources/coot-0.8.8-pre-revision-6506.tar.gz good /lmb/home/pemsley/autobuild/building/sources/coot-0.8.8-pre-revision-6506.tar.gz exists Tue Dec 27 04:00:05 GMT 2016 /lmb/home/pemsley/autobuild/building/pcterm37.lmb.internal_2016-12-27__T04_00_02 BUILDING coot: version coot-0.8.8-pre-revision-6506, python=yes coot build was good. done coot build. INFO:: installation has refmac monomer library INFO:: installation has reference structures we are slimming directory /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python fat_dir is /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python clear_type is clear-static cleaned_dir is /lmb/home/pemsley/autobuild/coot-Linux-x86_64-centos-5-pre-release-gtk2-python rsyncing... /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/etc does not exist /lmb/home/pemsley/autobuild/Linux-pcterm37.lmb.internal-pre-release-gtk2-python/html does not exist done rsyncing. running tests: ======================== first coot test passed ========----============ in make_tar args: coot-Linux-x86_64-centos-5-pre-release-gtk2-python /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/holding/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz in make_tar: in dir: /lmb/home/pemsley/autobuild/building/pcterm37.lmb.internal_2016-12-27__T04_00_02/coot-0.8.8-pre taring nightly... from coot-Linux-x86_64-centos-5-pre-release-gtk2-python to /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/holding/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz done tar successfully. cding into coot-Linux-x86_64-centos-5-pre-release-gtk2-python from /lmb/home/pemsley/autobuild/building/pcterm37.lmb.internal_2016-12-27__T04_00_02/test-tar ln -s ../../coot-0.8.8-pre/greg-tests . second coot test... ======================== second coot test passed ======================== INFO:: in /lmb/home/pemsley/autobuild/building/pcterm37.lmb.internal_2016-12-27__T04_00_02/coot-0.8.8-pre and about to copy over README and RELEASE-NOTES to /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release about to publish files: transfer-to-web-server.sh /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release debug:: input: /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release debug:: ftp_name: coot/binaries/pre-releases file is /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz dest_dir is coot/binaries/pre-releases no server check calling ftp_it /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz transfer-to-web-server.sh /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz.md5sum /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release debug:: input: /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release debug:: ftp_name: coot/binaries/pre-releases file is /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz.md5sum dest_dir is coot/binaries/pre-releases no server check calling ftp_it /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz.md5sum coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz.md5sum coot-0.8.8-pre-revision-6506-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz.md5sum transfer-to-web-server.sh --no-server-check ChangeLog file is ChangeLog dest_dir is coot/binaries/pre-releases no server check calling ftp_it ChangeLog coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put ChangeLog ChangeLog transfer-to-web-server.sh --no-server-check coot-README file is coot-README dest_dir is coot/binaries/pre-releases no server check calling ftp_it coot-README coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put coot-README coot-README transfer-to-web-server.sh --no-server-check /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES file is /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES dest_dir is coot/binaries/pre-releases no server check calling ftp_it /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES coot/binaries/pre-releases will cd to coot/binaries/pre-releases will put /lmb/home/pemsley/public_html/software/binaries/nightlies/pre-release/PRE-RELEASE-NOTES PRE-RELEASE-NOTES done copy of README and RELEASE-NOTES debug:: input: coot/build-logs/Linux-pcterm37.lmb.internal debug:: ftp_name: coot/build-logs/Linux-pcterm37.lmb.internal file is /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build-status dest_dir is coot/build-logs/Linux-pcterm37.lmb.internal no server check calling ftp_it /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build-status coot/build-logs/Linux-pcterm37.lmb.internal will cd to coot/build-logs/Linux-pcterm37.lmb.internal will put /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build-status build-status debug:: input: coot/build-logs/Linux-pcterm37.lmb.internal debug:: ftp_name: coot/build-logs/Linux-pcterm37.lmb.internal file is /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build.log dest_dir is coot/build-logs/Linux-pcterm37.lmb.internal no server check calling ftp_it /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build.log coot/build-logs/Linux-pcterm37.lmb.internal will cd to coot/build-logs/Linux-pcterm37.lmb.internal will put /lmb/home/pemsley/public_html/build-logs/Linux-pcterm37.lmb.internal/build.log build.log