/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708 Fri Aug 5 12:14:07 BST 2016 . ------------------------------------------------------------------------------ . clipper . ------------------------------------------------------------------------------ CPPFLAGS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include LDFLAGS -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib PKG_CONFIG_PATH /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/pkgconfig now we have LIBS -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ./configure --prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --enable-mmdb=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --enable-ccp4=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --enable-shared --enable-mmdb --enable-cif --enable-ccp4 --enable-minimol --enable-cns CXXFLAGS=-g -O2 -fno-strict-aliasing checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of gcc... gcc3 checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for library containing cos... -lm checking for prefixed single-precision FFTW2 (sfftw.h)... no checking for not prefixed single-precision FFTW2 (fftw.h)... yes checking for the pthreads library -lpthreads... no checking for the pthreads library -lpthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... no checking for MMDB_CCIF_Init in -lmmdb2... yes checking mmdb2/mmdb_manager.h usability... yes checking mmdb2/mmdb_manager.h presence... yes checking for mmdb2/mmdb_manager.h... yes checking for ccp4_banner in -lccp4c... yes checking ccp4/ccp4_general.h usability... yes checking ccp4/ccp4_general.h presence... yes checking for ccp4/ccp4_general.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating clipper/Makefile config.status: creating clipper/core/Makefile config.status: creating clipper/contrib/Makefile config.status: creating examples/Makefile config.status: creating clipper.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Summary ------------------------------ core: yes contrib: yes phs: yes cns: yes mmdb: yes minimol: yes cif: yes ccp4: yes cctbx: no fortran: no make all-recursive make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' Making all in clipper make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' Making all in core make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-atomsf.lo -MD -MP -MF .deps/libclipper_core_la-atomsf.Tpo -c -o libclipper_core_la-atomsf.lo `test -f 'atomsf.cpp' || echo './'`atomsf.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. 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'nxmap_operator.cpp' || echo './'`nxmap_operator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-nxmap_operator.lo -MD -MP -MF .deps/libclipper_core_la-nxmap_operator.Tpo -c nxmap_operator.cpp -fPIC -DPIC -o .libs/libclipper_core_la-nxmap_operator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-nxmap_operator.lo -MD -MP -MF .deps/libclipper_core_la-nxmap_operator.Tpo -c nxmap_operator.cpp -o libclipper_core_la-nxmap_operator.o >/dev/null 2>&1 mv -f .deps/libclipper_core_la-nxmap_operator.Tpo .deps/libclipper_core_la-nxmap_operator.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-resol_basisfn.lo -MD -MP -MF .deps/libclipper_core_la-resol_basisfn.Tpo -c resol_basisfn.cpp -o libclipper_core_la-resol_basisfn.o >/dev/null 2>&1 mv -f .deps/libclipper_core_la-resol_basisfn.Tpo .deps/libclipper_core_la-resol_basisfn.Plo /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-clipper_memory.lo -MD -MP -MF .deps/libclipper_core_la-clipper_memory.Tpo -c -o libclipper_core_la-clipper_memory.lo `test -f 'clipper_memory.cpp' || echo './'`clipper_memory.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT libclipper_core_la-clipper_memory.lo -MD -MP -MF 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libclipper_core_la-spacegroup.o libclipper_core_la-clipper_types.o libclipper_core_la-hkl_info.o libclipper_core_la-spacegroup_data.o libclipper_core_la-clipper_util.o libclipper_core_la-hkl_lookup.o libclipper_core_la-symop.o libclipper_core_la-container.o libclipper_core_la-hkl_operators.o libclipper_core_la-container_hkl.o libclipper_core_la-map_interp.o libclipper_core_la-container_map.o libclipper_core_la-map_utils.o libclipper_core_la-xmap.o libclipper_core_la-container_types.o libclipper_core_la-nxmap.o libclipper_core_la-clipper_thread.o libclipper_core_la-test_core.o libclipper_core_la-test_data.o libtool: link: ranlib .libs/libclipper-core.a libtool: link: ( cd ".libs" && rm -f "libclipper-core.la" && ln -s "../libclipper-core.la" "libclipper-core.la" ) make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' Making all in contrib make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' depbase=`echo convolution_search.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT convolution_search.lo -MD -MP -MF $depbase.Tpo -c -o convolution_search.lo convolution_search.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.Tpo -c convolution_search.cpp -fPIC -DPIC -o .libs/convolution_search.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT convolution_search.lo -MD -MP -MF .deps/convolution_search.Tpo -c convolution_search.cpp -o convolution_search.o >/dev/null 2>&1 depbase=`echo sfcalc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfcalc.lo -MD -MP -MF $depbase.Tpo -c -o sfcalc.lo sfcalc.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.Tpo -c sfcalc.cpp -fPIC -DPIC -o .libs/sfcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfcalc.lo -MD -MP -MF .deps/sfcalc.Tpo -c sfcalc.cpp -o sfcalc.o >/dev/null 2>&1 depbase=`echo edcalc.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT edcalc.lo -MD -MP -MF $depbase.Tpo -c -o edcalc.lo edcalc.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT edcalc.lo -MD -MP -MF .deps/edcalc.Tpo -c edcalc.cpp -fPIC -DPIC -o .libs/edcalc.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT edcalc.lo -MD -MP -MF .deps/edcalc.Tpo -c edcalc.cpp -o edcalc.o >/dev/null 2>&1 depbase=`echo sfcalc_obs.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT fffear.lo -MD -MP -MF .deps/fffear.Tpo -c fffear.cpp -fPIC -DPIC -o .libs/fffear.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT fffear.lo -MD -MP -MF .deps/fffear.Tpo -c fffear.cpp -o fffear.o >/dev/null 2>&1 depbase=`echo sfscale.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfscale.lo -MD -MP -MF $depbase.Tpo -c -o sfscale.lo sfscale.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfscale.lo -MD -MP -MF .deps/sfscale.Tpo -c sfscale.cpp -fPIC -DPIC -o .libs/sfscale.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfscale.lo -MD -MP -MF .deps/sfscale.Tpo -c sfscale.cpp -o sfscale.o >/dev/null 2>&1 depbase=`echo function_object_bases.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT function_object_bases.lo -MD -MP -MF $depbase.Tpo -c -o function_object_bases.lo function_object_bases.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.Tpo -c function_object_bases.cpp -fPIC -DPIC -o .libs/function_object_bases.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT function_object_bases.lo -MD -MP -MF .deps/function_object_bases.Tpo -c function_object_bases.cpp -o function_object_bases.o >/dev/null 2>&1 depbase=`echo sfweight.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfweight.lo -MD -MP -MF $depbase.Tpo -c -o sfweight.lo sfweight.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfweight.lo -MD -MP -MF .deps/sfweight.Tpo -c sfweight.cpp -fPIC -DPIC -o .libs/sfweight.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT sfweight.lo -MD -MP -MF .deps/sfweight.Tpo -c sfweight.cpp -o sfweight.o >/dev/null 2>&1 depbase=`echo mapfilter.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mapfilter.lo -MD -MP -MF $depbase.Tpo -c -o mapfilter.lo mapfilter.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.Tpo -c mapfilter.cpp -fPIC -DPIC -o .libs/mapfilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mapfilter.lo -MD -MP -MF .deps/mapfilter.Tpo -c mapfilter.cpp -o mapfilter.o >/dev/null 2>&1 depbase=`echo skeleton.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT skeleton.lo -MD -MP -MF $depbase.Tpo -c -o skeleton.lo skeleton.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT skeleton.lo -MD -MP -MF .deps/skeleton.Tpo -c skeleton.cpp -fPIC -DPIC -o .libs/skeleton.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT skeleton.lo -MD -MP -MF .deps/skeleton.Tpo -c skeleton.cpp -o skeleton.o >/dev/null 2>&1 depbase=`echo originmatch.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT originmatch.lo -MD -MP -MF $depbase.Tpo -c -o originmatch.lo originmatch.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT originmatch.lo -MD -MP -MF .deps/originmatch.Tpo -c originmatch.cpp -fPIC -DPIC -o .libs/originmatch.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT originmatch.lo -MD -MP -MF .deps/originmatch.Tpo -c originmatch.cpp -o originmatch.o >/dev/null 2>&1 depbase=`echo test_contrib.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT test_contrib.lo -MD -MP -MF $depbase.Tpo -c -o test_contrib.lo test_contrib.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.Tpo -c test_contrib.cpp -fPIC -DPIC -o .libs/test_contrib.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT test_contrib.lo -MD -MP -MF .deps/test_contrib.Tpo -c test_contrib.cpp -o test_contrib.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o libclipper-contrib.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core/.libs -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ../core/.libs/libclipper-core.so -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so.2" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so.2") libtool: link: (cd ".libs" && rm -f "libclipper-contrib.so" && ln -s "libclipper-contrib.so.2.0.1" "libclipper-contrib.so") libtool: link: ar cru .libs/libclipper-contrib.a convolution_search.o sfcalc.o edcalc.o sfcalc_obs.o fffear.o sfscale.o function_object_bases.o sfweight.o mapfilter.o skeleton.o originmatch.o test_contrib.o libtool: link: ranlib .libs/libclipper-contrib.a libtool: link: ( cd ".libs" && rm -f "libclipper-contrib.la" && ln -s "../libclipper-contrib.la" "libclipper-contrib.la" ) make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' depbase=`echo mmdb/clipper_mmdb.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mmdb/clipper_mmdb.lo -MD -MP -MF $depbase.Tpo -c -o mmdb/clipper_mmdb.lo mmdb/clipper_mmdb.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mmdb/clipper_mmdb.lo -MD -MP -MF mmdb/.deps/clipper_mmdb.Tpo -c mmdb/clipper_mmdb.cpp -fPIC -DPIC -o mmdb/.libs/clipper_mmdb.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT mmdb/clipper_mmdb.lo -MD -MP -MF mmdb/.deps/clipper_mmdb.Tpo -c mmdb/clipper_mmdb.cpp -o mmdb/clipper_mmdb.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o mmdb/libclipper-mmdb.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core/.libs -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib core/.libs/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: 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depbase=`echo minimol/minimol_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT minimol/minimol_utils.lo -MD -MP -MF $depbase.Tpo -c -o minimol/minimol_utils.lo minimol/minimol_utils.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT minimol/minimol_utils.lo -MD -MP -MF minimol/.deps/minimol_utils.Tpo -c minimol/minimol_utils.cpp -fPIC -DPIC -o minimol/.libs/minimol_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT minimol/minimol_utils.lo -MD -MP -MF minimol/.deps/minimol_utils.Tpo -c minimol/minimol_utils.cpp -o minimol/minimol_utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o minimol/libclipper-minimol.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath 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../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT phs/phs_io.lo -MD -MP -MF $depbase.Tpo -c -o phs/phs_io.lo phs/phs_io.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT phs/phs_io.lo -MD -MP -MF phs/.deps/phs_io.Tpo -c phs/phs_io.cpp -fPIC -DPIC -o phs/.libs/phs_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT phs/phs_io.lo -MD -MP -MF phs/.deps/phs_io.Tpo -c phs/phs_io.cpp -o phs/phs_io.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o phs/libclipper-phs.la -rpath 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/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core/.libs -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib core/.libs/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so.2" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so.2") libtool: link: (cd "cif/.libs" && rm -f "libclipper-cif.so" && ln -s "libclipper-cif.so.2.0.1" "libclipper-cif.so") libtool: link: ar cru cif/.libs/libclipper-cif.a cif/cif_data_io.o libtool: link: ranlib cif/.libs/libclipper-cif.a libtool: link: ( cd "cif/.libs" && rm -f "libclipper-cif.la" && ln -s "../libclipper-cif.la" "libclipper-cif.la" ) depbase=`echo ccp4/ccp4_mtz_types.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_types.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_types.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_types.lo -MD -MP -MF ccp4/.deps/ccp4_mtz_types.Tpo -c ccp4/ccp4_mtz_types.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_types.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_types.lo -MD -MP -MF ccp4/.deps/ccp4_mtz_types.Tpo -c ccp4/ccp4_mtz_types.cpp -o ccp4/ccp4_mtz_types.o >/dev/null 2>&1 depbase=`echo ccp4/ccp4_mtz_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_io.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/ccp4_mtz_io.lo ccp4/ccp4_mtz_io.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_io.lo -MD -MP -MF ccp4/.deps/ccp4_mtz_io.Tpo -c ccp4/ccp4_mtz_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_mtz_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_mtz_io.lo -MD -MP -MF ccp4/.deps/ccp4_mtz_io.Tpo -c ccp4/ccp4_mtz_io.cpp -o ccp4/ccp4_mtz_io.o >/dev/null 2>&1 depbase=`echo ccp4/ccp4_map_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_map_io.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/ccp4_map_io.lo ccp4/ccp4_map_io.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_map_io.lo -MD -MP -MF ccp4/.deps/ccp4_map_io.Tpo -c ccp4/ccp4_map_io.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_map_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_map_io.lo -MD -MP -MF ccp4/.deps/ccp4_map_io.Tpo -c ccp4/ccp4_map_io.cpp -o ccp4/ccp4_map_io.o >/dev/null 2>&1 depbase=`echo ccp4/ccp4_utils.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_utils.lo -MD -MP -MF $depbase.Tpo -c -o ccp4/ccp4_utils.lo ccp4/ccp4_utils.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_utils.lo -MD -MP -MF ccp4/.deps/ccp4_utils.Tpo -c ccp4/ccp4_utils.cpp -fPIC -DPIC -o ccp4/.libs/ccp4_utils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT ccp4/ccp4_utils.lo -MD -MP -MF ccp4/.deps/ccp4_utils.Tpo -c ccp4/ccp4_utils.cpp -o ccp4/ccp4_utils.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o ccp4/libclipper-ccp4.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core/.libs -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib core/.libs/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so.2" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so.2") libtool: link: (cd "ccp4/.libs" && rm -f "libclipper-ccp4.so" && ln -s "libclipper-ccp4.so.2.0.1" "libclipper-ccp4.so") libtool: link: ar cru ccp4/.libs/libclipper-ccp4.a ccp4/ccp4_mtz_types.o ccp4/ccp4_mtz_io.o ccp4/ccp4_map_io.o ccp4/ccp4_utils.o libtool: link: ranlib ccp4/.libs/libclipper-ccp4.a libtool: link: ( cd "ccp4/.libs" && rm -f "libclipper-ccp4.la" && ln -s "../libclipper-ccp4.la" "libclipper-ccp4.la" ) depbase=`echo cns/cns_hkl_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_hkl_io.lo -MD -MP -MF $depbase.Tpo -c -o cns/cns_hkl_io.lo cns/cns_hkl_io.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_hkl_io.lo -MD -MP -MF cns/.deps/cns_hkl_io.Tpo -c cns/cns_hkl_io.cpp -fPIC -DPIC -o cns/.libs/cns_hkl_io.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_hkl_io.lo -MD -MP -MF cns/.deps/cns_hkl_io.Tpo -c cns/cns_hkl_io.cpp -o cns/cns_hkl_io.o >/dev/null 2>&1 depbase=`echo cns/cns_map_io.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\ /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_map_io.lo -MD -MP -MF $depbase.Tpo -c -o cns/cns_map_io.lo cns/cns_map_io.cpp &&\ mv -f $depbase.Tpo $depbase.Plo libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_map_io.lo -MD -MP -MF cns/.deps/cns_map_io.Tpo -c cns/cns_map_io.cpp -fPIC -DPIC -o cns/.libs/cns_map_io.o cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = double]’: cns/cns_map_io.cpp:497:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:500:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:504:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:507:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:518:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:536:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:544:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:553:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘clipper::CNSMAPfile::ASUerror clipper::CNSMAPfile::import_xmap_check_asu(clipper::Xmap&, T) [with T = float]’: cns/cns_map_io.cpp:497:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:500:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:504:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:507:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:518:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:536:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:544:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:553:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = double]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = float]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = int]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short int]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = char]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_nxmap(clipper::NXmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:331:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:334:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:338:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:341:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:352:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:364:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:372:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:381:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = double]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = float]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = int]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned int]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short int]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = short unsigned int]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = char]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp: In member function ‘void clipper::CNSMAPfile::import_xmap(clipper::Xmap&) [with T = unsigned char]’: cns/cns_map_io.cpp:202:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:205:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:209:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:212:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:223:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:235:3: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:243:5: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] cns/cns_map_io.cpp:252:11: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -fno-strict-aliasing -MT cns/cns_map_io.lo -MD -MP -MF cns/.deps/cns_map_io.Tpo -c cns/cns_map_io.cpp -o cns/cns_map_io.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o cns/libclipper-cns.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core/.libs -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib core/.libs/libclipper-core.so -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so.2" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so.2") libtool: link: (cd "cns/.libs" && rm -f "libclipper-cns.so" && ln -s "libclipper-cns.so.2.0.1" "libclipper-cns.so") libtool: link: ar cru cns/.libs/libclipper-cns.a cns/cns_hkl_io.o cns/cns_map_io.o libtool: link: ranlib cns/.libs/libclipper-cns.a libtool: link: ( cd "cns/.libs" && rm -f "libclipper-cns.la" && ln -s "../libclipper-cns.la" "libclipper-cns.la" ) make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' Making all in examples make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' Making install in clipper make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' Making install in core make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-core.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libclipper-core.so.2.0.1 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so.2 || { rm -f libclipper-core.so.2 && ln -s libclipper-core.so.2.0.1 libclipper-core.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-core.so.2.0.1 libclipper-core.so || { rm -f libclipper-core.so && ln -s libclipper-core.so.2.0.1 libclipper-core.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-core.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.la libtool: install: /usr/bin/install -c .libs/libclipper-core.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core' /usr/bin/install -c -m 644 atomsf.h container_types.h nxmap_operator.h cell.h coords.h ramachandran.h clipper_instance.h derivs.h resol_basisfn.h clipper_memory.h fftmap.h resol_fn.h clipper_message.h fftmap_sparse.h resol_targetfn.h clipper_precision.h hkl_compute.h rotation.h clipper_stats.h hkl_data.h spacegroup.h clipper_sysdep.h hkl_datatypes.h spacegroup_data.h clipper_test.h hkl_info.h symop.h clipper_types.h hkl_lookup.h clipper_util.h hkl_operators.h container.h map_interp.h xmap.h container_hkl.h map_utils.h container_map.h nxmap.h clipper_thread.h test_core.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core' /usr/bin/install -c -m 644 test_data.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/core' Making install in contrib make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' /bin/bash ../../libtool --mode=install /usr/bin/install -c libclipper-contrib.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: warning: relinking 'libclipper-contrib.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o libclipper-contrib.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib convolution_search.lo sfcalc.lo edcalc.lo sfcalc_obs.lo fffear.lo sfscale.lo function_object_bases.lo sfweight.lo mapfilter.lo skeleton.lo originmatch.lo test_contrib.lo ../core/libclipper-core.la -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o .libs/convolution_search.o .libs/sfcalc.o .libs/edcalc.o .libs/sfcalc_obs.o .libs/fffear.o .libs/sfscale.o .libs/function_object_bases.o .libs/sfweight.o .libs/mapfilter.o .libs/skeleton.o .libs/originmatch.o .libs/test_contrib.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-contrib.so.2 -o .libs/libclipper-contrib.so.2.0.1 libtool: install: /usr/bin/install -c .libs/libclipper-contrib.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so.2 || { rm -f libclipper-contrib.so.2 && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-contrib.so.2.0.1 libclipper-contrib.so || { rm -f libclipper-contrib.so && ln -s libclipper-contrib.so.2.0.1 libclipper-contrib.so; }; }) libtool: install: /usr/bin/install -c .libs/libclipper-contrib.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.la libtool: install: /usr/bin/install -c .libs/libclipper-contrib.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib' /usr/bin/install -c -m 644 convolution_search.h mapfilter.h sfscale.h edcalc.h originmatch.h sfweight.h fffear.h sfcalc.h skeleton.h function_object_bases.h sfcalc_obs.h test_contrib.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper/contrib' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' /bin/bash ../libtool --mode=install /usr/bin/install -c mmdb/libclipper-mmdb.la minimol/libclipper-minimol.la phs/libclipper-phs.la cif/libclipper-cif.la ccp4/libclipper-ccp4.la cns/libclipper-cns.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: warning: relinking 'mmdb/libclipper-mmdb.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o mmdb/libclipper-mmdb.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib mmdb/clipper_mmdb.lo core/libclipper-core.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o mmdb/.libs/clipper_mmdb.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-mmdb.so.2 -o mmdb/.libs/libclipper-mmdb.so.2.0.1 libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2 || { rm -f libclipper-mmdb.so.2 && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-mmdb.so.2.0.1 libclipper-mmdb.so || { rm -f libclipper-mmdb.so && ln -s libclipper-mmdb.so.2.0.1 libclipper-mmdb.so; }; }) libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.la libtool: warning: relinking 'minimol/libclipper-minimol.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o minimol/libclipper-minimol.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib minimol/minimol.lo minimol/container_minimol.lo minimol/minimol_data.lo minimol/minimol_io.lo minimol/minimol_seq.lo minimol/minimol_utils.lo core/libclipper-core.la mmdb/libclipper-mmdb.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o minimol/.libs/minimol.o minimol/.libs/container_minimol.o minimol/.libs/minimol_data.o minimol/.libs/minimol_io.o minimol/.libs/minimol_seq.o minimol/.libs/minimol_utils.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -lclipper-mmdb -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-minimol.so.2 -o minimol/.libs/libclipper-minimol.so.2.0.1 libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so.2 || { rm -f libclipper-minimol.so.2 && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-minimol.so.2.0.1 libclipper-minimol.so || { rm -f libclipper-minimol.so && ln -s libclipper-minimol.so.2.0.1 libclipper-minimol.so; }; }) libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.la libtool: warning: relinking 'phs/libclipper-phs.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o phs/libclipper-phs.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib phs/phs_io.lo core/libclipper-core.la -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o phs/.libs/phs_io.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-phs.so.2 -o phs/.libs/libclipper-phs.so.2.0.1 libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so.2 || { rm -f libclipper-phs.so.2 && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-phs.so.2.0.1 libclipper-phs.so || { rm -f libclipper-phs.so && ln -s libclipper-phs.so.2.0.1 libclipper-phs.so; }; }) libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.la libtool: warning: relinking 'cif/libclipper-cif.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o cif/libclipper-cif.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib cif/cif_data_io.lo core/libclipper-core.la -lmmdb2 -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o cif/.libs/cif_data_io.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-cif.so.2 -o cif/.libs/libclipper-cif.so.2.0.1 libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so.2 || { rm -f libclipper-cif.so.2 && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-cif.so.2.0.1 libclipper-cif.so || { rm -f libclipper-cif.so && ln -s libclipper-cif.so.2.0.1 libclipper-cif.so; }; }) libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.la libtool: warning: relinking 'ccp4/libclipper-ccp4.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o ccp4/libclipper-ccp4.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ccp4/ccp4_mtz_types.lo ccp4/ccp4_mtz_io.lo ccp4/ccp4_map_io.lo ccp4/ccp4_utils.lo core/libclipper-core.la -lccp4c -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o ccp4/.libs/ccp4_mtz_types.o ccp4/.libs/ccp4_mtz_io.o ccp4/.libs/ccp4_map_io.o ccp4/.libs/ccp4_utils.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -lccp4c -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-ccp4.so.2 -o ccp4/.libs/libclipper-ccp4.so.2.0.1 libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2 || { rm -f libclipper-ccp4.so.2 && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-ccp4.so.2.0.1 libclipper-ccp4.so || { rm -f libclipper-ccp4.so && ln -s libclipper-ccp4.so.2.0.1 libclipper-ccp4.so; }; }) libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.la libtool: warning: relinking 'cns/libclipper-cns.la' libtool: install: (cd /home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper; /bin/bash "/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/libtool" --tag CXX --mode=relink g++ -g -O2 -fno-strict-aliasing -version-info 2:1 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -o cns/libclipper-cns.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib cns/cns_hkl_io.lo cns/cns_map_io.lo core/libclipper-core.la -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/4.6/crtbeginS.o cns/.libs/cns_hkl_io.o cns/.libs/cns_map_io.o -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-core -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/usr/lib/gcc/x86_64-linux-gnu/4.6 -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/4.6/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/4.6/../../../x86_64-linux-gnu/crtn.o -g -O2 -Wl,-soname -Wl,libclipper-cns.so.2 -o cns/.libs/libclipper-cns.so.2.0.1 libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.so.2.0.1T /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so.2.0.1 libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so.2 || { rm -f libclipper-cns.so.2 && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so.2; }; }) libtool: install: (cd /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib && { ln -s -f libclipper-cns.so.2.0.1 libclipper-cns.so || { rm -f libclipper-cns.so && ln -s libclipper-cns.so.2.0.1 libclipper-cns.so; }; }) libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.la libtool: install: /usr/bin/install -c mmdb/.libs/libclipper-mmdb.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.a libtool: install: /usr/bin/install -c minimol/.libs/libclipper-minimol.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.a libtool: install: /usr/bin/install -c phs/.libs/libclipper-phs.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.a libtool: install: /usr/bin/install -c cif/.libs/libclipper-cif.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.a libtool: install: /usr/bin/install -c ccp4/.libs/libclipper-ccp4.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.a libtool: install: /usr/bin/install -c cns/.libs/libclipper-cns.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the '-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the 'LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the 'LD_RUN_PATH' environment variable during linking - use the '-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to '/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4' /usr/bin/install -c -m 644 ccp4/ccp4_map_io.h ccp4/ccp4_mtz_io.h ccp4/ccp4_mtz_types.h ccp4/ccp4_utils.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif' /usr/bin/install -c -m 644 cif/cif_data_io.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns' /usr/bin/install -c -m 644 cns/cns_hkl_io.h cns/cns_map_io.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/minimol' /usr/bin/install -c -m 644 minimol/container_minimol.h minimol/minimol_data.h minimol/minimol_seq.h minimol/minimol.h minimol/minimol_io.h minimol/minimol_utils.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/minimol' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/mmdb' /usr/bin/install -c -m 644 mmdb/clipper_mmdb.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/mmdb' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/phs' /usr/bin/install -c -m 644 phs/phs_io.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/phs' /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper' /usr/bin/install -c -m 644 clipper-ccp4.h clipper-contrib.h clipper-phs.h clipper-cctbx.h clipper-minimol.h clipper.h clipper-cif.h clipper-mmdb.h minimal-clipper-hkl.h clipper-cns.h minimal-clipper-map.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/clipper' Making install in examples make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708/examples' make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' make[2]: Nothing to be done for `install-exec-am'. /bin/mkdir -p '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/pkgconfig' /usr/bin/install -c -m 644 clipper.pc '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/pkgconfig' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2016-08-05__T11_13_02/clipper-2.1.20160708'