No one logged on. From tar file: /home/paule/autobuild/building/sources/coot-0.8.9-pre-revision-7201.tar.gz building in: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre CFLAGS: CXXFLAGS: -g -O CPPFLAGS: LDFLAGS: using this guile: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/guile ./configure --prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --with-fftw-prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --with-goocanvas-prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --with-glut-prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python COOT_BUILD_INFO_STRING=built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018 --with-guile --with-guile-gtk --with-guile-gtk-prefix=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python --with-python --with-pygtk --disable-shared checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for library containing strerror... none required checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for ar... ar checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++ accepts -g... (cached) yes checking dependency style of g++... (cached) gcc3 checking how to run the C++ preprocessor... g++ -E checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking which libtool initialization strategy to adopt... AC-PROG-LIBTOOL checking what warning flags to pass to the C compiler... -Wall -Wunused checking what language compliance flags to pass to the C compiler... checking what warning flags to pass to the C++ compiler... -Wall -Wno-unused checking what language compliance flags to pass to the C++ compiler... checking sys/stdtypes.h usability... no checking sys/stdtypes.h presence... no checking for sys/stdtypes.h... no checking for OpenMP flag of C compiler... -fopenmp checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GLIB... yes checking if this is MINGW on Windows... no checking for SQLite3... no checking for mmdb2... yes checking for ssm... yes no checking for prefixed single-precision FFTW2 (sfftw.h)... no checking for non-prefixed single-precision FFTW2 (fftw.h)... yes checking for Clipper... yes Congratulations, you are using Guile checking for guile... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/guile checking for guile-config... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/guile-config checking for guile-tools... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/guile-tools checking libguile compile flags... -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread checking libguile link flags... -P -pthread -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lguile -lltdl -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgmp -lcrypt -lm -lltdl checking for Guile-Lib... yes checking for guile-gui... yes checking GUILE_VERSION: 1.8 checking for gsl-config... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/gsl-config checking for GSL - version >= 1.3... yes checking for GTK... yes checking for GNOME_CANVAS... yes checking for pkg-config... /usr/bin/pkg-config checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) checking for glLineWidth in -lGL... yes checking for GLUT... yes checking for Python... checking Python.h usability... yes checking Python.h presence... yes checking for Python.h... yes Cool, using Python checking for PYGTK... yes Good we have pygtk checking for python version... 2.7 checking for python platform... linux2 checking for python script directory... ${prefix}/lib/python2.7/site-packages checking for python extension module directory... ${exec_prefix}/lib/python2.7/site-packages checking for guile-gtk... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python checking for boostlib >= 1.20.0... configure: We could not detect the boost libraries (version 1.20 or higher). If you have a staged boost library (still not installed) please specify $BOOST_ROOT in your environment and do not give a PATH to --with-boost option. If you are sure you have boost installed, then check your version number looking in . See http://randspringer.de/boost for more documentation. checking for python2.7... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/python2.7 checking for a version of Python >= '2.1.0'... yes checking for the distutils Python package... yes checking for Python include path... -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 checking for Python library path... -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lpython2.7 checking for Python site-packages path... /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages checking python extra libraries... -lpthread -ldl -lutil -lm checking python extra linking flags... -Xlinker -export-dynamic checking consistency of all components of python development environment... yes checking whether the Boost::Python library is available... no checking libglade... no checking for Goocanvas... yes Not using MySQL database checking for curl >= 7.9.7... 7.32.0 checking build type... Linux-x86_64-ubuntu-12.04.3-python-gtk2 configure: creating ./config.status config.status: creating Makefile config.status: creating macros/Makefile config.status: creating pdb-templates/Makefile config.status: creating scheme/Makefile config.status: creating python/Makefile config.status: creating compat/Makefile config.status: creating utils/Makefile config.status: creating coot-utils/Makefile config.status: creating protein_db/Makefile config.status: creating ccp4mg-utils/Makefile config.status: creating coords/Makefile config.status: creating db-main/Makefile config.status: creating density-contour/Makefile config.status: creating surface/Makefile config.status: creating coot-surface/Makefile config.status: creating angles/Makefile config.status: creating mini-mol/Makefile config.status: creating skeleton/Makefile config.status: creating ligand/Makefile config.status: creating geometry/Makefile config.status: creating ideal/Makefile config.status: creating build/Makefile config.status: creating analysis/Makefile config.status: creating high-res/Makefile config.status: creating tw/Makefile config.status: creating cootaneer/Makefile config.status: creating cootilus/Makefile config.status: creating greg-tests/Makefile config.status: creating python-tests/Makefile config.status: creating lidia-core/Makefile config.status: creating libgtkgraph/Makefile config.status: creating goograph/Makefile config.status: creating lbg/Makefile config.status: creating doc/Makefile config.status: creating src/Makefile config.status: creating src/coot config.status: creating python/coot_load_modules.py config.status: creating data/Makefile config.status: creating data/rama-coeffs/Makefile config.status: creating data/cho-models/Makefile config.status: creating data/cho-acedrg/Makefile config.status: creating pixmaps/Makefile config.status: creating pixmaps/icons/Makefile config.status: creating rama-data/Makefile config.status: creating man/Makefile config.status: creating pli/Makefile config.status: creating pyrogen/Makefile config.status: creating pyrogen/pyrogen config.status: creating auxil/Makefile config.status: creating auxil/catcheck/Makefile config.status: creating auxil/rama/Makefile config.status: creating auxil/sec-str/Makefile config.status: creating auxil/strand-analysis/Makefile config.status: creating auxil/vectors/Makefile config.status: creating rcrane/Makefile config.status: executing depfiles commands config.status: executing libtool commands Making all in auxil make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' Making all in catcheck make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' Making all in rama make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' Making all in sec-str make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' Making all in strand-analysis make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' Making all in vectors make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' Making all in scheme make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' Making all in python make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' Making all in pdb-templates make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' Making all in macros make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' Making all in compat make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o mv -f .deps/getopt.Tpo .deps/getopt.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o mv -f .deps/getopt1.Tpo .deps/getopt1.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wunused -o libcoot-compat.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib getopt.lo getopt1.lo libtool: link: ar cru .libs/libcoot-compat.a getopt.o getopt1.o libtool: link: ranlib .libs/libcoot-compat.a libtool: link: ( cd ".libs" && rm -f "libcoot-compat.la" && ln -s "../libcoot-compat.la" "libcoot-compat.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' Making all in utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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gdk-keysyms.lo -MD -MP -MF .deps/gdk-keysyms.Tpo -c gdk-keysyms.cc -o gdk-keysyms.o mv -f .deps/gdk-keysyms.Tpo .deps/gdk-keysyms.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c -o hsv-rgb.lo hsv-rgb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT hsv-rgb.lo -MD -MP -MF .deps/hsv-rgb.Tpo -c hsv-rgb.cc -o hsv-rgb.o mv -f .deps/hsv-rgb.Tpo .deps/hsv-rgb.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 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align-utils.lo -MD -MP -MF .deps/align-utils.Tpo -c align-utils.cc -o align-utils.o mv -f .deps/align-utils.Tpo .deps/align-utils.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-utils.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib coot-utils.lo coot-fasta.lo atomic-numbers.lo gdk-keysyms.lo hsv-rgb.lo dodec.lo win-compat.lo threads.lo align-utils.lo libtool: link: ar cru .libs/libcoot-utils.a coot-utils.o coot-fasta.o atomic-numbers.o gdk-keysyms.o hsv-rgb.o dodec.o win-compat.o threads.o align-utils.o libtool: link: ranlib .libs/libcoot-utils.a libtool: link: ( cd ".libs" && rm -f "libcoot-utils.la" && ln -s "../libcoot-utils.la" "libcoot-utils.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' Making all in protein_db make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c -o protein_db.lo protein_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT protein_db.lo -MD -MP -MF .deps/protein_db.Tpo -c protein_db.cpp -o protein_db.o mv -f .deps/protein_db.Tpo .deps/protein_db.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c -o protein_db_utils.lo protein_db_utils.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT protein_db_utils.lo -MD -MP -MF .deps/protein_db_utils.Tpo -c protein_db_utils.cpp -o protein_db_utils.o mv -f .deps/protein_db_utils.Tpo .deps/protein_db_utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c -o rna_db.lo rna_db.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rna_db.lo -MD -MP -MF .deps/rna_db.Tpo -c rna_db.cpp -o rna_db.o mv -f .deps/rna_db.Tpo .deps/rna_db.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-protein-db.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib protein_db.lo protein_db_utils.lo rna_db.lo -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: ar cru .libs/libcoot-protein-db.a protein_db.o protein_db_utils.o rna_db.o libtool: link: ranlib .libs/libcoot-protein-db.a libtool: link: ( cd ".libs" && rm -f "libcoot-protein-db.la" && ln -s "../libcoot-protein-db.la" "libcoot-protein-db.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' Making all in mini-mol make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c -o atom-quads.lo atom-quads.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT atom-quads.lo -MD -MP -MF .deps/atom-quads.Tpo -c atom-quads.cc -o atom-quads.o mv -f .deps/atom-quads.Tpo .deps/atom-quads.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-mini-mol.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib mini-mol.lo mini-mol-utils.lo atom-quads.lo ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ar cru .libs/libcoot-mini-mol.a mini-mol.o mini-mol-utils.o atom-quads.o libtool: link: ranlib .libs/libcoot-mini-mol.a libtool: link: ( cd ".libs" && rm -f "libcoot-mini-mol.la" && ln -s "../libcoot-mini-mol.la" "libcoot-mini-mol.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' Making all in geometry make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c -o protein-geometry.lo protein-geometry.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c protein-geometry.cc -o protein-geometry.o mv -f .deps/protein-geometry.Tpo .deps/protein-geometry.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c -o protein-geometry-mmdb.lo protein-geometry-mmdb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -o protein-geometry-mmdb.o mv -f .deps/protein-geometry-mmdb.Tpo .deps/protein-geometry-mmdb.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT residue-and-atom-specs.lo -MD -MP -MF .deps/residue-and-atom-specs.Tpo -c -o residue-and-atom-specs.lo residue-and-atom-specs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT residue-and-atom-specs.lo -MD -MP -MF .deps/residue-and-atom-specs.Tpo -c residue-and-atom-specs.cc -o residue-and-atom-specs.o mv -f .deps/residue-and-atom-specs.Tpo .deps/residue-and-atom-specs.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT mol-utils-2.lo -MD -MP -MF .deps/mol-utils-2.Tpo -c -o mol-utils-2.lo mol-utils-2.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT mol-utils-2.lo -MD -MP -MF .deps/mol-utils-2.Tpo -c mol-utils-2.cc -o mol-utils-2.o mv -f .deps/mol-utils-2.Tpo .deps/mol-utils-2.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-geometry.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib protein-geometry.lo protein-geometry-mmdb.lo read-sbase.lo energy-lib.lo chem_mods.lo srs-interface.lo protein-donor-acceptors.lo lbg-graph.lo dreiding.lo dict-utils.lo cif-parse.lo main-chain.lo residue-and-atom-specs.lo mol-utils-2.lo ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: ar cru .libs/libcoot-geometry.a protein-geometry.o protein-geometry-mmdb.o read-sbase.o energy-lib.o chem_mods.o srs-interface.o protein-donor-acceptors.o lbg-graph.o dreiding.o dict-utils.o cif-parse.o main-chain.o residue-and-atom-specs.o mol-utils-2.o libtool: link: ranlib .libs/libcoot-geometry.a 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-DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT compare-dictionaries.o -MD -MP -MF .deps/compare-dictionaries.Tpo -c -o compare-dictionaries.o compare-dictionaries.cc mv -f .deps/compare-dictionaries.Tpo .deps/compare-dictionaries.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o coot-compare-dictionaries compare-dictionaries.o ./libcoot-geometry.la libtool: link: g++ -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o coot-compare-dictionaries compare-dictionaries.o ./.libs/libcoot-geometry.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so 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-DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o coot-make-shelx-restraints make-shelx-restraints.o ./libcoot-geometry.la libtool: link: g++ -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o coot-make-shelx-restraints make-shelx-restraints.o ./.libs/libcoot-geometry.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT available-comp-id.o -MD -MP -MF .deps/available-comp-id.Tpo -c -o available-comp-id.o available-comp-id.cc mv -f .deps/available-comp-id.Tpo .deps/available-comp-id.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o coot-available-comp-id available-comp-id.o ./libcoot-geometry.la libtool: link: g++ -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o coot-available-comp-id available-comp-id.o ./.libs/libcoot-geometry.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' Making all in coot-utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c -o coot-coord-utils.lo coot-coord-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -o coot-coord-utils.o mv -f .deps/coot-coord-utils.Tpo .deps/coot-coord-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c -o coot-coord-utils-nucleotides.lo coot-coord-utils-nucleotides.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-coord-utils-nucleotides.lo -MD -MP -MF .deps/coot-coord-utils-nucleotides.Tpo -c coot-coord-utils-nucleotides.cc -o coot-coord-utils-nucleotides.o mv -f .deps/coot-coord-utils-nucleotides.Tpo .deps/coot-coord-utils-nucleotides.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c -o coot-rama.lo coot-rama.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-rama.lo -MD -MP -MF .deps/coot-rama.Tpo -c coot-rama.cc -o coot-rama.o mv -f .deps/coot-rama.Tpo .deps/coot-rama.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c -o coot-h-bonds.lo coot-h-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-h-bonds.lo -MD -MP -MF .deps/coot-h-bonds.Tpo -c coot-h-bonds.cc -o coot-h-bonds.o mv -f .deps/coot-h-bonds.Tpo .deps/coot-h-bonds.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c -o hole.lo hole.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT hole.lo -MD -MP -MF .deps/hole.Tpo -c hole.cc -o hole.o mv -f .deps/hole.Tpo .deps/hole.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c -o read-sm-cif.lo read-sm-cif.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT read-sm-cif.lo -MD -MP -MF .deps/read-sm-cif.Tpo -c read-sm-cif.cc -o read-sm-cif.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/clipper_instance.h:49:0, from read-sm-cif.cc:32: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag, clipper::HKL_data_base = clipper::HKL_data_base]’: read-sm-cif.cc:1204:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: read-sm-cif.cc:1204:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: read-sm-cif.cc:1204:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: read-sm-cif.cc:1204:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/read-sm-cif.Tpo .deps/read-sm-cif.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT bonded-pairs.lo -MD -MP -MF .deps/bonded-pairs.Tpo -c -o bonded-pairs.lo bonded-pairs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT bonded-pairs.lo -MD -MP -MF .deps/bonded-pairs.Tpo -c bonded-pairs.cc -o bonded-pairs.o mv -f .deps/bonded-pairs.Tpo .deps/bonded-pairs.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT helix-analysis.lo -MD -MP -MF .deps/helix-analysis.Tpo -c -o helix-analysis.lo helix-analysis.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT helix-analysis.lo -MD -MP -MF .deps/helix-analysis.Tpo -c helix-analysis.cc -o helix-analysis.o mv -f .deps/helix-analysis.Tpo .deps/helix-analysis.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT elastic.lo -MD -MP -MF .deps/elastic.Tpo -c -o elastic.lo elastic.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT elastic.lo -MD -MP -MF .deps/elastic.Tpo -c elastic.cc -o elastic.o mv -f .deps/elastic.Tpo .deps/elastic.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT glyco-torsions.lo -MD -MP -MF .deps/glyco-torsions.Tpo -c -o glyco-torsions.lo glyco-torsions.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT glyco-torsions.lo -MD -MP -MF .deps/glyco-torsions.Tpo -c glyco-torsions.cc -o glyco-torsions.o mv -f .deps/glyco-torsions.Tpo .deps/glyco-torsions.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-least-squares.lo -MD -MP -MF .deps/coot-least-squares.Tpo -c -o coot-least-squares.lo coot-least-squares.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c coot-coord-lsq.cc -o coot-coord-lsq.o mv -f .deps/coot-coord-lsq.Tpo .deps/coot-coord-lsq.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c -o coot-tree-extras.lo coot-tree-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-tree-extras.lo -MD -MP -MF .deps/coot-tree-extras.Tpo -c coot-tree-extras.cc -o coot-tree-extras.o mv -f .deps/coot-tree-extras.Tpo .deps/coot-tree-extras.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c -o water-coordination.lo water-coordination.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT water-coordination.lo -MD -MP -MF .deps/water-coordination.Tpo -c water-coordination.cc -o water-coordination.o mv -f .deps/water-coordination.Tpo .deps/water-coordination.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c -o lsq-improve.lo lsq-improve.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT lsq-improve.lo -MD -MP -MF .deps/lsq-improve.Tpo -c lsq-improve.cc -o lsq-improve.o mv -f .deps/lsq-improve.Tpo .deps/lsq-improve.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-coord-utils-glyco.lo -MD -MP -MF .deps/coot-coord-utils-glyco.Tpo -c -o coot-coord-utils-glyco.lo coot-coord-utils-glyco.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-coord-utils-glyco.lo -MD -MP -MF .deps/coot-coord-utils-glyco.Tpo -c coot-coord-utils-glyco.cc -o coot-coord-utils-glyco.o mv -f .deps/coot-coord-utils-glyco.Tpo .deps/coot-coord-utils-glyco.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-coord-extras.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib coot-coord-extras.lo coot-coord-lsq.lo coot-tree-extras.lo water-coordination.lo lsq-improve.lo coot-coord-utils-glyco.lo libcoot-coord-utils.la libtool: link: ar cru .libs/libcoot-coord-extras.a coot-coord-extras.o coot-coord-lsq.o coot-tree-extras.o water-coordination.o lsq-improve.o coot-coord-utils-glyco.o libtool: link: ranlib .libs/libcoot-coord-extras.a libtool: link: ( cd ".libs" && rm -f "libcoot-coord-extras.la" && ln -s "../libcoot-coord-extras.la" "libcoot-coord-extras.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c -o coot-map-utils.lo coot-map-utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c coot-map-utils.cc -o coot-map-utils.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_compute.h:48, from coot-map-utils.cc:30: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: coot-map-utils.cc:2475:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: coot-map-utils.cc:2475:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: coot-map-utils.cc:2475:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/coot-map-utils.Tpo .deps/coot-map-utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c -o peak-search.lo peak-search.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c peak-search.cc -o peak-search.o mv -f .deps/peak-search.Tpo .deps/peak-search.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT peak-search-from-list.lo -MD -MP -MF .deps/peak-search-from-list.Tpo -c -o peak-search-from-list.lo peak-search-from-list.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT peak-search-from-list.lo -MD -MP -MF .deps/peak-search-from-list.Tpo -c peak-search-from-list.cc -o peak-search-from-list.o mv -f .deps/peak-search-from-list.Tpo .deps/peak-search-from-list.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c -o trim.lo trim.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c trim.cc -o trim.o mv -f .deps/trim.Tpo .deps/trim.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT xmap-stats.lo -MD -MP -MF .deps/xmap-stats.Tpo -c -o xmap-stats.lo xmap-stats.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT xmap-stats.lo -MD -MP -MF .deps/xmap-stats.Tpo -c xmap-stats.cc -o xmap-stats.o mv -f .deps/xmap-stats.Tpo .deps/xmap-stats.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT maps-spherical.lo -MD -MP -MF .deps/maps-spherical.Tpo -c -o maps-spherical.lo maps-spherical.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT maps-spherical.lo -MD -MP -MF .deps/maps-spherical.Tpo -c maps-spherical.cc -o maps-spherical.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/sfcalc.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/clipper-contrib.h:7, from maps-spherical.cc:26: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: maps-spherical.cc:380:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: maps-spherical.cc:380:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/maps-spherical.Tpo .deps/maps-spherical.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-map-utils.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib coot-map-utils.lo peak-search.lo peak-search-from-list.lo trim.lo xmap-stats.lo maps-spherical.lo libcoot-coord-utils.la libtool: link: ar cru .libs/libcoot-map-utils.a coot-map-utils.o peak-search.o peak-search-from-list.o trim.o xmap-stats.o maps-spherical.o libtool: link: ranlib .libs/libcoot-map-utils.a libtool: link: ( cd ".libs" && rm -f "libcoot-map-utils.la" && ln -s "../libcoot-map-utils.la" "libcoot-map-utils.la" ) /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c -o coot-map-heavy.lo coot-map-heavy.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -o coot-map-heavy.o mv -f .deps/coot-map-heavy.Tpo .deps/coot-map-heavy.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c -o coot-fffear.lo coot-fffear.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DUSE_GUILE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -o coot-fffear.o mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-map-heavy.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib coot-map-heavy.lo coot-fffear.lo libcoot-map-utils.la libcoot-coord-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: ar cru .libs/libcoot-map-heavy.a coot-map-heavy.o coot-fffear.o libtool: link: ranlib .libs/libcoot-map-heavy.a libtool: link: ( cd ".libs" && rm -f "libcoot-map-heavy.la" && ln -s "../libcoot-map-heavy.la" "libcoot-map-heavy.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' Making all in surface make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE 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.deps/CXXNewHood.Tpo -c CXXNewHood.cpp -o CXXNewHood.o In file included from CXXNewHood.h:22:0, from CXXNewHood.cpp:15: CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] CXXNewHood.cpp:346:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] CXXNewHood.cpp:377:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] CXXNewHood.cpp:410:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] mv -f .deps/CXXNewHood.Tpo .deps/CXXNewHood.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c -o CXXTriangle.lo CXXTriangle.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c -o CXXNode.lo CXXNode.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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-o CXXQADSurface.lo CXXQADSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -o CXXQADSurface.o In file included from CXXNewHood.h:22:0, from CXXQADSurface.h:11, from CXXQADSurface.cpp:1: CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c -o CXXBall.lo CXXBall.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXBall.lo -MD -MP -MF .deps/CXXBall.Tpo -c CXXBall.cpp -o CXXBall.o In file included from CXXBall.cpp:10:0: CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] CXXBall.cpp:34:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] CXXBall.cpp:83:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] CXXBall.cpp:197:0: warning: ignoring #pragma omp parallel [-Wunknown-pragmas] mv -f .deps/CXXBall.Tpo .deps/CXXBall.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo CXXQADSurfaceStaticData.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -o CXXQADSurfaceStaticData.o In file included from CXXNewHood.h:22:0, from CXXQADSurface.h:11, from CXXQADSurfaceStaticData.cpp:1: CXXBall.h:79:0: warning: ignoring #pragma omp critical [-Wunknown-pragmas] mv -f .deps/CXXQADSurfaceStaticData.Tpo .deps/CXXQADSurfaceStaticData.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I../coot-utils -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g 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/bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-electrostatics.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXBall.lo CXXQADSurfaceStaticData.lo CXXSpace.lo CXXUtils.lo -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lrfftw -lfftw -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: ar cru .libs/libcoot-electrostatics.a CXXSphereElement.o CXXChargeTable.o CXXSphereNode.o CXXCircle.o CXXSphereTriangle.o CXXCircleNode.o CXXSphereTriangleEdge.o CXXCoord.o CXXSurface.o CXXCreator.o CXXSurfaceVertex.o CXXException.o CXXTorusElement.o CXXFFTSolventMap.o CXXTorusNode.o CXXFortranFile.o CXXNewHood.o CXXTriangle.o CXXNode.o CXXQADSurface.o CXXBall.o CXXQADSurfaceStaticData.o CXXSpace.o CXXUtils.o libtool: link: ranlib .libs/libcoot-electrostatics.a libtool: link: ( cd ".libs" && rm -f "libcoot-electrostatics.la" && ln -s "../libcoot-electrostatics.la" "libcoot-electrostatics.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' Making all in coot-surface make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-surface.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib coot-surface.lo rgbreps.lo ../surface/libcoot-electrostatics.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lglut -L/usr/X11R6/lib -lGL libtool: link: ar cru .libs/libcoot-surface.a coot-surface.o rgbreps.o libtool: link: ranlib .libs/libcoot-surface.a libtool: link: ( cd ".libs" && rm -f "libcoot-surface.la" && ln -s "../libcoot-surface.la" "libcoot-surface.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' Making all in lidia-core make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT lbg-shared.lo -MD -MP -MF .deps/lbg-shared.Tpo -c -o lbg-shared.lo lbg-shared.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT lbg-shared.lo -MD -MP -MF .deps/lbg-shared.Tpo -c lbg-shared.cc -o lbg-shared.o mv -f .deps/lbg-shared.Tpo .deps/lbg-shared.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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-DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT lbg-molfile.lo -MD -MP -MF .deps/lbg-molfile.Tpo -c lbg-molfile.cc -o lbg-molfile.o mv -f .deps/lbg-molfile.Tpo .deps/lbg-molfile.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT lig-build.lo -MD -MP -MF .deps/lig-build.Tpo -c -o lig-build.lo lig-build.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c -o rdkit-interface.lo rdkit-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT rdkit-interface.lo -MD -MP -MF .deps/rdkit-interface.Tpo -c rdkit-interface.cc -o rdkit-interface.o mv -f .deps/rdkit-interface.Tpo .deps/rdkit-interface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cod-types.lo -MD -MP -MF .deps/cod-types.Tpo -c -o cod-types.lo cod-types.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cod-types.lo -MD -MP -MF .deps/cod-types.Tpo -c cod-types.cc -o cod-types.o mv -f .deps/cod-types.Tpo .deps/cod-types.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -o Cartesian.o mv -f .deps/Cartesian.Tpo .deps/Cartesian.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 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-DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -o cos-sin.o mv -f .deps/cos-sin.Tpo .deps/cos-sin.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c -o mmdb-extras.lo mmdb-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c mmdb-extras.cc -o mmdb-extras.o mv -f .deps/mmdb-extras.Tpo .deps/mmdb-extras.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.cc -o utils.o mv -f .deps/utils.Tpo .deps/utils.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c -o mmdb.lo mmdb.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c mmdb.cc -o mmdb.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/cif_data_io.h:48, from ../coot-utils/read-sm-cif.hh:2, from mmdb.cc:47: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: mmdb.cc:822:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: mmdb.cc:822:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/mmdb.Tpo .deps/mmdb.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c -o mmdb-crystal.lo mmdb-crystal.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc -o mmdb-crystal.o mv -f .deps/mmdb-crystal.Tpo .deps/mmdb-crystal.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c -o Bond_lines_ext.lo Bond_lines_ext.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -o Bond_lines_ext.o mv -f .deps/Bond_lines_ext.Tpo .deps/Bond_lines_ext.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c -o coot-close.lo coot-close.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o mv -f .deps/coot-close.Tpo .deps/coot-close.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT phenix-geo.lo -MD -MP -MF .deps/phenix-geo.Tpo -c -o phenix-geo.lo phenix-geo.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT phenix-geo.lo -MD -MP -MF .deps/phenix-geo.Tpo -c phenix-geo.cc -o phenix-geo.o mv -f .deps/phenix-geo.Tpo .deps/phenix-geo.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -MT phenix-geo-bonds.lo -MD -MP -MF .deps/phenix-geo-bonds.Tpo -c -o phenix-geo-bonds.lo phenix-geo-bonds.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT phenix-geo-bonds.lo -MD -MP -MF .deps/phenix-geo-bonds.Tpo -c phenix-geo-bonds.cc -o phenix-geo-bonds.o mv -f .deps/phenix-geo-bonds.Tpo .deps/phenix-geo-bonds.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -g -O -Wall -Wno-unused -o libcoot-coords.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo phenix-geo.lo phenix-geo-bonds.lo ../geometry/libcoot-geometry.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: ar cru .libs/libcoot-coords.a Bond_lines.o Cartesian.o cos-sin.o mmdb-extras.o utils.o mmdb.o mmdb-crystal.o Bond_lines_ext.o coot-close.o phenix-geo.o phenix-geo-bonds.o libtool: link: ranlib .libs/libcoot-coords.a libtool: link: ( cd ".libs" && rm -f "libcoot-coords.la" && ln -s "../libcoot-coords.la" "libcoot-coords.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords' Making all in angles make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O1 -g -O -Wall -Wno-unused -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O1 -g -O -Wall -Wno-unused -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 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libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo libtool: link: ar cru .libs/libcoot-AngleInfo.a libcoot_AngleInfo_la-AngleInfo.o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o libtool: link: ranlib .libs/libcoot-AngleInfo.a libtool: link: ( cd ".libs" && rm -f "libcoot-AngleInfo.la" && ln -s "../libcoot-AngleInfo.la" "libcoot-AngleInfo.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' Making all in skeleton make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 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directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' Making all in ccp4mg-utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT geomutil.lo -MD -MP 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c -o cartesian.lo cartesian.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -o cartesian.o mv -f .deps/cartesian.Tpo .deps/cartesian.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo ppmutil.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_LIBPNG -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libccp4mg-utils.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo -lpng libtool: link: ar cru .libs/libccp4mg-utils.a geomutil.o mgtree.o cartesian.o matrix.o quat.o ppmutil.o libtool: link: ranlib .libs/libccp4mg-utils.a libtool: link: ( cd ".libs" && rm -f "libccp4mg-utils.la" && ln -s "../libccp4mg-utils.la" "libccp4mg-utils.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' Making all in density-contour make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" 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-DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o mv -f .deps/Vectors.Tpo .deps/Vectors.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c -o density-contour-triangles.lo density-contour-triangles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT density-contour-triangles.lo -MD -MP -MF .deps/density-contour-triangles.Tpo -c density-contour-triangles.cc -o density-contour-triangles.o mv -f .deps/density-contour-triangles.Tpo .deps/density-contour-triangles.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-isosurface.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib Vectors.lo CIsoSurface.lo density-contour-triangles.lo ../coords/libcoot-coords.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ar cru .libs/libcoot-isosurface.a Vectors.o CIsoSurface.o density-contour-triangles.o libtool: link: ranlib .libs/libcoot-isosurface.a libtool: link: ( cd ".libs" && rm -f "libcoot-isosurface.la" && ln -s "../libcoot-isosurface.la" "libcoot-isosurface.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' Making all in db-main make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" 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-DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -o db-main.o mv -f .deps/db-main.Tpo .deps/db-main.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" 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-DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -g -O -Wall -Wno-unused -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o mv -f 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"libcoot-db-main.la" && ln -s "../libcoot-db-main.la" "libcoot-db-main.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' Making all in analysis make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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mogul.lo -MD -MP -MF .deps/mogul.Tpo -c -o mogul.lo mogul.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT mogul.lo -MD -MP -MF .deps/mogul.Tpo -c mogul.cc -o mogul.o mv -f .deps/mogul.Tpo .deps/mogul.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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-DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT stats.lo -MD -MP -MF .deps/stats.Tpo -c stats.cc -o stats.o mv -f .deps/stats.Tpo .deps/stats.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cablam.lo -MD -MP -MF .deps/cablam.Tpo -c -o cablam.lo cablam.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cablam.lo -MD -MP -MF .deps/cablam.Tpo -c cablam.cc -o cablam.o mv -f .deps/cablam.Tpo .deps/cablam.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT typed-distances.lo -MD -MP -MF .deps/typed-distances.Tpo -c -o typed-distances.lo typed-distances.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT typed-distances.lo -MD -MP -MF .deps/typed-distances.Tpo -c typed-distances.cc -o typed-distances.o mv -f .deps/typed-distances.Tpo .deps/typed-distances.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-analysis.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib bfkurt.lo mogul.lo kolmogorov.lo stats.lo cablam.lo typed-distances.lo ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: ar cru .libs/libcoot-analysis.a bfkurt.o mogul.o kolmogorov.o stats.o cablam.o typed-distances.o libtool: link: ranlib .libs/libcoot-analysis.a libtool: link: ( cd ".libs" && rm -f "libcoot-analysis.la" && ln -s "../libcoot-analysis.la" "libcoot-analysis.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o bfactan.cc mv -f .deps/bfactan.Tpo .deps/bfactan.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o coot-bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-coord-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: g++ -g -O -Wall -Wno-unused -o coot-bfactan bfactan.o ./.libs/libcoot-analysis.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so ../geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a ../mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' Making all in ideal make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' /bin/bash ../libtool --tag=CXX --mode=compile g++ 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc -o simple-restraint.o mv -f .deps/simple-restraint.Tpo .deps/simple-restraint.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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-DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT mods.lo -MD -MP -MF .deps/mods.Tpo -c mods.cc -o mods.o mv -f .deps/mods.Tpo .deps/mods.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT trans-peptide.lo -MD -MP -MF .deps/trans-peptide.Tpo -c trans-peptide.cc -o trans-peptide.o mv -f .deps/trans-peptide.Tpo .deps/trans-peptide.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT model-bond-deltas.lo -MD -MP -MF .deps/model-bond-deltas.Tpo -c -o model-bond-deltas.lo model-bond-deltas.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT model-bond-deltas.lo -MD -MP -MF .deps/model-bond-deltas.Tpo -c model-bond-deltas.cc -o model-bond-deltas.o mv -f .deps/model-bond-deltas.Tpo .deps/model-bond-deltas.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT write-png.lo -MD -MP -MF .deps/write-png.Tpo -c -o write-png.lo write-png.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT write-png.lo -MD -MP -MF .deps/write-png.Tpo -c write-png.cc -o write-png.o mv -f .deps/write-png.Tpo .deps/write-png.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT zo-rama.lo -MD -MP -MF .deps/zo-rama.Tpo -c -o zo-rama.lo zo-rama.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT zo-rama.lo -MD -MP -MF .deps/zo-rama.Tpo -c zo-rama.cc -o zo-rama.o mv -f .deps/zo-rama.Tpo .deps/zo-rama.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT crankshaft.lo -MD -MP -MF .deps/crankshaft.Tpo -c -o crankshaft.lo crankshaft.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT crankshaft.lo -MD -MP -MF .deps/crankshaft.Tpo -c crankshaft.cc -o crankshaft.o mv -f .deps/crankshaft.Tpo .deps/crankshaft.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT phi-psi.lo -MD -MP -MF .deps/phi-psi.Tpo -c -o phi-psi.lo phi-psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT phi-psi.lo -MD -MP -MF .deps/phi-psi.Tpo -c phi-psi.cc -o phi-psi.o mv -f .deps/phi-psi.Tpo .deps/phi-psi.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -o libcoot-ideal.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib simple-restraint.lo mods.lo distortion.lo chirals.lo flanking.lo gradients.lo extra-restraints.lo pepflip.lo regularize-minimol.lo lograma.lo extra-restraints-kk.lo simple-restraint-kk.lo torsion-bonds.lo coot-compare-residues.lo link-restraints.lo parallel-planes.lo trans-peptide.lo model-bond-deltas.lo write-png.lo zo-rama.lo crankshaft.lo phi-psi.lo ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -lpng libtool: link: ar cru .libs/libcoot-ideal.a simple-restraint.o mods.o distortion.o chirals.o flanking.o gradients.o extra-restraints.o pepflip.o regularize-minimol.o lograma.o extra-restraints-kk.o simple-restraint-kk.o torsion-bonds.o coot-compare-residues.o link-restraints.o parallel-planes.o trans-peptide.o model-bond-deltas.o write-png.o zo-rama.o crankshaft.o phi-psi.o libtool: link: ranlib .libs/libcoot-ideal.a libtool: link: ( cd ".libs" && rm -f "libcoot-ideal.la" && ln -s "../libcoot-ideal.la" "libcoot-ideal.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -MT mini-rsr.o -MD -MP -MF .deps/mini-rsr.Tpo -c -o mini-rsr.o mini-rsr.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_types.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h:49, from mini-rsr.cc:51: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: mini-rsr.cc:829:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: mini-rsr.cc:829:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: mini-rsr.cc:829:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/mini-rsr.Tpo .deps/mini-rsr.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -o mini-rsr-bin mini-rsr.o ./libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la ../mini-mol/libcoot-mini-mol.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DHAVE_GSL -g -O -Wall -Wno-unused -o mini-rsr-bin mini-rsr.o -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ./.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a ../mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' Making all in ligand make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c -o ligand.lo ligand.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c ligand.cc -o ligand.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_types.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h:49, from ligand.cc:55: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: ligand.cc:2792:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: ligand.cc:2792:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: ligand.cc:2792:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/ligand.Tpo .deps/ligand.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c -o ligand-extras.lo ligand-extras.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc -o ligand-extras.o mv -f .deps/ligand-extras.Tpo .deps/ligand-extras.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo residue_by_phi_psi.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -o residue_by_phi_psi.o mv -f .deps/residue_by_phi_psi.Tpo .deps/residue_by_phi_psi.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c -o wiggly-ligand.lo wiggly-ligand.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c wiggly-ligand.cc -o wiggly-ligand.o mv -f .deps/wiggly-ligand.Tpo .deps/wiggly-ligand.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c dunbrack.cc -o dunbrack.o mv -f .deps/dunbrack.Tpo .deps/dunbrack.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include 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-g -O -Wall -Wno-unused -MT ligands-db.lo -MD -MP -MF .deps/ligands-db.Tpo -c ligands-db.cc -o ligands-db.o mv -f .deps/ligands-db.Tpo .deps/ligands-db.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-ligand.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo fast-ss-search.lo rigid-body.lo ideal-rna.lo richardson-rotamers.lo richardson-rotamer.lo rotamer.lo torsion-general.lo rotamer-tables.lo primitive-chi-angles.lo dipole.lo base-pairing.lo backrub-rotamer.lo trace.lo trace-2.lo multi-peptide.lo ligands-db.lo ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../analysis/libcoot-analysis.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: ar cru .libs/libcoot-ligand.a ligand.o ligand-extras.o residue_by_phi_psi.o wiggly-ligand.o monomer-utils.o dunbrack.o chi-angles-autogen.o chi-angles.o helix-placement.o fast-ss-search.o rigid-body.o ideal-rna.o richardson-rotamers.o richardson-rotamer.o rotamer.o torsion-general.o rotamer-tables.o primitive-chi-angles.o dipole.o base-pairing.o backrub-rotamer.o trace.o trace-2.o multi-peptide.o ligands-db.o libtool: link: ranlib .libs/libcoot-ligand.a libtool: link: ( cd ".libs" && rm -f "libcoot-ligand.la" && ln -s "../libcoot-ligand.la" "libcoot-ligand.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o findligand-bin find-ligand.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../db-main/libcoot-db-main.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o findligand-bin find-ligand.o ./.libs/libcoot-ligand.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main/.libs/libcoot-db-main.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils/.libs/libccp4mg-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis/.libs/libcoot-analysis.a ../ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../db-main/.libs/libcoot-db-main.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a ../mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc mv -f .deps/find-waters.Tpo .deps/find-waters.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o findwaters-bin find-waters.o ./libcoot-ligand.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../utils/libcoot-utils.la ../lidia-core/libcoot-lidia-core.la ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la ../compat/libcoot-compat.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o findwaters-bin find-waters.o ./.libs/libcoot-ligand.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main/.libs/libcoot-db-main.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils/.libs/libccp4mg-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis/.libs/libcoot-analysis.a ../ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../db-main/.libs/libcoot-db-main.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../lidia-core/.libs/libcoot-lidia-core.a ../coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a ../mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT make-ligands-db.o -MD -MP -MF .deps/make-ligands-db.Tpo -c -o make-ligands-db.o make-ligands-db.cc mv -f .deps/make-ligands-db.Tpo .deps/make-ligands-db.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o coot-make-ligands-db make-ligands-db.o ./libcoot-ligand.la libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -o coot-make-ligands-db make-ligands-db.o ./.libs/libcoot-ligand.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main/.libs/libcoot-db-main.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils/.libs/libccp4mg-utils.a -lpng /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis/.libs/libcoot-analysis.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' Making all in high-res make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c -o high-res.lo high-res.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc -o high-res.o mv -f .deps/high-res.Tpo .deps/high-res.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c -o coot-atom-graph.lo coot-atom-graph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc -o coot-atom-graph.o mv -f .deps/coot-atom-graph.Tpo .deps/coot-atom-graph.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" 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-DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -o residue-distortions.o mv -f .deps/residue-distortions.Tpo .deps/residue-distortions.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c -o sequence-assignment.lo sequence-assignment.cc libtool: compile: g++ 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make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' Making all in build make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/build' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE 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`/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' Making all in python-tests make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' Making all in tw make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o mv -f .deps/tw.Tpo .deps/tw.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-tw.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib tw.lo libtool: link: ar cru .libs/libcoot-tw.a tw.o libtool: link: ranlib .libs/libcoot-tw.a libtool: link: ( cd ".libs" && rm -f "libcoot-tw.la" && ln -s "../libcoot-tw.la" "libcoot-tw.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' Making all in libgtkgraph make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c -o annotation.lo annotation.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT annotation.lo -MD -MP -MF .deps/annotation.Tpo -c annotation.c -o annotation.o mv -f .deps/annotation.Tpo .deps/annotation.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c -o polar_util.lo polar_util.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT polar_util.lo -MD -MP -MF .deps/polar_util.Tpo -c polar_util.c -o polar_util.o mv -f .deps/polar_util.Tpo .deps/polar_util.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c -o trace.lo trace.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT trace.lo -MD -MP -MF .deps/trace.Tpo -c trace.c -o trace.o mv -f .deps/trace.Tpo .deps/trace.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c -o axis.lo axis.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT axis.lo -MD -MP -MF .deps/axis.Tpo -c axis.c -o axis.o mv -f .deps/axis.Tpo .deps/axis.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c -o gtkgraph.lo gtkgraph.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT gtkgraph.lo -MD -MP -MF .deps/gtkgraph.Tpo -c gtkgraph.c -o gtkgraph.o mv -f .deps/gtkgraph.Tpo .deps/gtkgraph.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c -o polar.lo polar.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT polar.lo -MD -MP -MF .deps/polar.Tpo -c polar.c -o polar.o mv -f .deps/polar.Tpo .deps/polar.Plo /bin/bash ../libtool --tag=CC --mode=compile gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c -o smith.lo smith.c libtool: compile: gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O2 -Wall -Wunused -MT smith.lo -MD -MP -MF .deps/smith.Tpo -c smith.c -o smith.o mv -f .deps/smith.Tpo .deps/smith.Plo /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wunused -o libcoot-gtkgraph.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib annotation.lo polar_util.lo trace.lo axis.lo gtkgraph.lo polar.lo smith.lo -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -lm libtool: link: ar cru .libs/libcoot-gtkgraph.a annotation.o polar_util.o trace.o axis.o gtkgraph.o polar.o smith.o libtool: link: ranlib .libs/libcoot-gtkgraph.a libtool: link: ( cd ".libs" && rm -f "libcoot-gtkgraph.la" && ln -s "../libcoot-gtkgraph.la" "libcoot-gtkgraph.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' Making all in lbg make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c -o lbg.lo lbg.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT lbg.lo -MD -MP -MF .deps/lbg.Tpo -c lbg.cc -o lbg.o mv -f .deps/lbg.Tpo .deps/lbg.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lbg-flev.lo -MD -MP -MF .deps/lbg-flev.Tpo -c -o lbg-flev.lo lbg-flev.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT lbg-flev.lo -MD -MP -MF .deps/lbg-flev.Tpo -c lbg-flev.cc -o lbg-flev.o mv -f .deps/lbg-flev.Tpo .deps/lbg-flev.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c -o wmolecule.lo wmolecule.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT wmolecule.lo -MD -MP -MF .deps/wmolecule.Tpo -c wmolecule.cc -o wmolecule.o mv -f .deps/wmolecule.Tpo .deps/wmolecule.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c -o lbg-search.lo lbg-search.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT lbg-search.lo -MD -MP -MF .deps/lbg-search.Tpo -c lbg-search.cc -o lbg-search.o mv -f .deps/lbg-search.Tpo .deps/lbg-search.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c -o residue-circles.lo residue-circles.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT residue-circles.lo -MD -MP -MF .deps/residue-circles.Tpo -c residue-circles.cc -o residue-circles.o mv -f .deps/residue-circles.Tpo .deps/residue-circles.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lbg-drag-and-drop.lo -MD -MP -MF .deps/lbg-drag-and-drop.Tpo -c -o lbg-drag-and-drop.lo lbg-drag-and-drop.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT lbg-drag-and-drop.lo -MD -MP -MF .deps/lbg-drag-and-drop.Tpo -c lbg-drag-and-drop.cc -o lbg-drag-and-drop.o mv -f .deps/lbg-drag-and-drop.Tpo .deps/lbg-drag-and-drop.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c -o qed-interface.lo qed-interface.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT qed-interface.lo -MD -MP -MF .deps/qed-interface.Tpo -c qed-interface.cc -o qed-interface.o mv -f .deps/qed-interface.Tpo .deps/qed-interface.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c -o alerts.lo alerts.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT alerts.lo -MD -MP -MF .deps/alerts.Tpo -c alerts.cc -o alerts.o mv -f .deps/alerts.Tpo .deps/alerts.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c -o alerts-list.lo alerts-list.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT alerts-list.lo -MD -MP -MF .deps/alerts-list.Tpo -c alerts-list.cc -o alerts-list.o mv -f .deps/alerts-list.Tpo .deps/alerts-list.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT qed-properties.lo -MD -MP -MF .deps/qed-properties.Tpo -c -o qed-properties.lo qed-properties.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -MT qed-properties.lo -MD -MP -MF .deps/qed-properties.Tpo -c qed-properties.cc -o qed-properties.o mv -f .deps/qed-properties.Tpo .deps/qed-properties.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -o libcoot-lidia.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib lbg.lo lbg-flev.lo wmolecule.lo lbg-search.lo residue-circles.lo lbg-drag-and-drop.lo qed-interface.lo alerts.lo alerts-list.lo qed-properties.lo ../geometry/libcoot-geometry.la ../mini-mol/libcoot-mini-mol.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/lib64 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgoocanvas -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -lutil libtool: link: ar cru .libs/libcoot-lidia.a lbg.o lbg-flev.o wmolecule.o lbg-search.o residue-circles.o lbg-drag-and-drop.o qed-interface.o alerts.o alerts-list.o qed-properties.o libtool: link: ranlib .libs/libcoot-lidia.a libtool: link: ( cd ".libs" && rm -f "libcoot-lidia.la" && ln -s "../libcoot-lidia.la" "libcoot-lidia.la" ) g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lidia-main.o -MD -MP -MF .deps/lidia-main.Tpo -c -o lidia-main.o lidia-main.cc mv -f .deps/lidia-main.Tpo .deps/lidia-main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -g -O -Wall -Wno-unused -Wl,--export-dynamic -o lidia lidia-main.o lbg-callbacks-outer.o ./libcoot-lidia.la libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -g -O -Wall -Wno-unused -Wl,--export-dynamic -o lidia lidia-main.o lbg-callbacks-outer.o ./.libs/libcoot-lidia.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/lib64 /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 /usr/lib/x86_64-linux-gnu/libcairo.so -lpango-1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig -lgobject-2.0 -lglib-2.0 -lpython2.7 -lpthread -ldl -lutil -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' Making all in cootaneer make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootaneer' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT buccaneer-lib.lo -MD -MP -MF .deps/buccaneer-lib.Tpo -c buccaneer-lib.cpp -o buccaneer-lib.o mv -f .deps/buccaneer-lib.Tpo .deps/buccaneer-lib.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c -o buccaneer-prot.lo buccaneer-prot.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT buccaneer-prot.lo -MD -MP -MF .deps/buccaneer-prot.Tpo -c buccaneer-prot.cpp -o buccaneer-prot.o mv -f .deps/buccaneer-prot.Tpo .deps/buccaneer-prot.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c -o buccaneer-sequence.lo buccaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT buccaneer-sequence.lo -MD -MP -MF .deps/buccaneer-sequence.Tpo -c buccaneer-sequence.cpp -o buccaneer-sequence.o mv -f .deps/buccaneer-sequence.Tpo .deps/buccaneer-sequence.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cootaneer-sequence.lo -MD -MP -MF .deps/cootaneer-sequence.Tpo -c -o cootaneer-sequence.lo cootaneer-sequence.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cootaneer-sequence.lo 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Making all in cootilus make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT nucleicacid_db.lo -MD -MP -MF .deps/nucleicacid_db.Tpo -c -o 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT nautilus-join.lo -MD -MP -MF .deps/nautilus-join.Tpo -c nautilus-join.cpp -o nautilus-join.o mv -f .deps/nautilus-join.Tpo .deps/nautilus-join.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c -o nautilus-target.lo nautilus-target.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT nautilus-target.lo -MD -MP -MF .deps/nautilus-target.Tpo -c nautilus-target.cpp -o nautilus-target.o mv -f .deps/nautilus-target.Tpo .deps/nautilus-target.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cootilus-build.lo -MD -MP -MF .deps/cootilus-build.Tpo -c -o cootilus-build.lo cootilus-build.cpp libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT cootilus-build.lo -MD -MP -MF .deps/cootilus-build.Tpo -c cootilus-build.cpp -o cootilus-build.o mv -f .deps/cootilus-build.Tpo .deps/cootilus-build.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcootilus.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib nucleicacid_db.lo nautilus-tools.lo nautilus-ss-find.lo nautilus-join.lo nautilus-target.lo cootilus-build.lo -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 libtool: link: ar cru .libs/libcootilus.a nucleicacid_db.o nautilus-tools.o nautilus-ss-find.o nautilus-join.o nautilus-target.o cootilus-build.o libtool: link: ranlib .libs/libcootilus.a libtool: link: ( cd ".libs" && rm -f "libcootilus.la" && ln -s "../libcootilus.la" "libcootilus.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' Making all in goograph make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT goograph.lo -MD -MP -MF .deps/goograph.Tpo -c -o goograph.lo goograph.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT goograph.lo -MD -MP -MF .deps/goograph.Tpo -c goograph.cc -o goograph.o mv -f .deps/goograph.Tpo .deps/goograph.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-goograph.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib goograph.lo ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgoocanvas -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 libtool: link: ar cru .libs/libcoot-goograph.a goograph.o libtool: link: ranlib .libs/libcoot-goograph.a libtool: link: ( cd ".libs" && rm -f "libcoot-goograph.la" && ln -s "../libcoot-goograph.la" "libcoot-goograph.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' Making all in pli make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 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-I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT flev-annotations.lo -MD -MP -MF .deps/flev-annotations.Tpo -c flev-annotations.cc -o flev-annotations.o mv -f .deps/flev-annotations.Tpo .deps/flev-annotations.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 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-DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT pi-stacking.lo -MD -MP -MF .deps/pi-stacking.Tpo -c pi-stacking.cc -o pi-stacking.o mv -f .deps/pi-stacking.Tpo .deps/pi-stacking.Plo /bin/bash ../libtool --tag=CXX --mode=compile g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT specs.lo -MD -MP -MF .deps/specs.Tpo -c -o specs.lo specs.cc libtool: compile: g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" "-DPACKAGE_STRING=\"coot 0.8.9-pre\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_GSL -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -g -O -Wall -Wno-unused -MT specs.lo -MD -MP -MF .deps/specs.Tpo -c specs.cc -o specs.o In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/Python.h:8:0, from specs.hh:7, from specs.cc:5: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] /usr/include/features.h:164:0: note: this is the location of the previous definition /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1216:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] /usr/include/features.h:166:0: note: this is the location of the previous definition mv -f .deps/specs.Tpo .deps/specs.Plo /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O -Wall -Wno-unused -o libcoot-pli.la -rpath /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib protein-ligand-interactions.lo flev-annotations.lo pi-stacking.lo specs.lo ../lidia-core/libcoot-lidia-core.la -L/lib64 libtool: link: ar cru .libs/libcoot-pli.a protein-ligand-interactions.o flev-annotations.o pi-stacking.o specs.o libtool: link: ranlib .libs/libcoot-pli.a libtool: link: ( cd ".libs" && rm -f "libcoot-pli.la" && ln -s "../libcoot-pli.la" "libcoot-pli.la" ) make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' Making all in pyrogen make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' Making all in src make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT fix-nomenclature.o -MD -MP -MF .deps/fix-nomenclature.Tpo -c -o fix-nomenclature.o fix-nomenclature.cc mv -f .deps/fix-nomenclature.Tpo .deps/fix-nomenclature.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-nomenclature.o -MD -MP -MF .deps/coot-nomenclature.Tpo -c -o coot-nomenclature.o coot-nomenclature.cc mv -f .deps/coot-nomenclature.Tpo .deps/coot-nomenclature.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/libcoot-ligand.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../coot-utils/libcoot-map-heavy.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-shelx.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale\" -DPKGPYTHONDIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.3-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-fix-nomenclature-errors fix-nomenclature.o coot-nomenclature.o ../ligand/.libs/libcoot-ligand.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main/.libs/libcoot-db-main.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils/.libs/libccp4mg-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis/.libs/libcoot-analysis.a ../db-main/.libs/libcoot-db-main.a ../ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-shelx.a ../lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -pthread -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from main.cc:97: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: main.cc:914:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: main.cc:914:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/main.Tpo .deps/main.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT boot-python.o -MD -MP -MF .deps/boot-python.Tpo -c -o boot-python.o boot-python.cc mv -f .deps/boot-python.Tpo .deps/boot-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT atom-overlaps.o -MD -MP -MF .deps/atom-overlaps.Tpo -c -o atom-overlaps.o atom-overlaps.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from atom-overlaps.cc:40: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: atom-overlaps.cc:183:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: atom-overlaps.cc:183:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/atom-overlaps.Tpo .deps/atom-overlaps.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT git-revision-count.o -MD -MP -MF .deps/git-revision-count.Tpo -c -o git-revision-count.o git-revision-count.cc mv -f .deps/git-revision-count.Tpo .deps/git-revision-count.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT scm-boot-guile.o -MD -MP -MF .deps/scm-boot-guile.Tpo -c -o scm-boot-guile.o scm-boot-guile.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from scm-boot-guile.cc:54: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: scm-boot-guile.cc:255:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: scm-boot-guile.cc:255:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/scm-boot-guile.Tpo .deps/scm-boot-guile.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-analysis.o -MD -MP -MF .deps/c-interface-analysis.Tpo -c -o c-interface-analysis.o c-interface-analysis.cc In file included from ../coot-utils/coot-map-utils.hh:30:0, from c-interface-analysis.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-analysis.cc:267:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-analysis.cc:267:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-analysis.Tpo .deps/c-interface-analysis.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-bonds.o -MD -MP -MF .deps/c-interface-bonds.Tpo -c -o c-interface-bonds.o c-interface-bonds.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-bonds.cc:23: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-bonds.cc:99:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-bonds.cc:99:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-bonds.Tpo .deps/c-interface-bonds.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build.o -MD -MP -MF .deps/c-interface-build.Tpo -c -o c-interface-build.o c-interface-build.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build.cc:70: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build.cc:5498:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build.cc:5498:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build.Tpo .deps/c-interface-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build-morph.o -MD -MP -MF .deps/c-interface-build-morph.Tpo -c -o c-interface-build-morph.o c-interface-build-morph.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build-morph.cc:70: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-morph.cc:293:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-morph.cc:293:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build-morph.Tpo .deps/c-interface-build-morph.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build-main-chain.o -MD -MP -MF .deps/c-interface-build-main-chain.Tpo -c -o c-interface-build-main-chain.o c-interface-build-main-chain.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build-main-chain.cc:68: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-main-chain.cc:747:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-main-chain.cc:747:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build-main-chain.Tpo .deps/c-interface-build-main-chain.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build-side-chain.o -MD -MP -MF .deps/c-interface-build-side-chain.Tpo -c -o c-interface-build-side-chain.o c-interface-build-side-chain.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build-side-chain.cc:70: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-side-chain.cc:1047:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-side-chain.cc:1047:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build-side-chain.Tpo .deps/c-interface-build-side-chain.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build-symmetry.o -MD -MP -MF .deps/c-interface-build-symmetry.Tpo -c -o c-interface-build-symmetry.o c-interface-build-symmetry.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build-symmetry.cc:70: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-symmetry.cc:574:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-symmetry.cc:574:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build-symmetry.Tpo .deps/c-interface-build-symmetry.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-build-gui.o -MD -MP -MF .deps/c-interface-build-gui.Tpo -c -o c-interface-build-gui.o c-interface-build-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-build-gui.cc:65: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-gui.cc:1795:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-build-gui.cc:1795:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-build-gui.Tpo .deps/c-interface-build-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-database.o -MD -MP -MF .deps/c-interface-database.Tpo -c -o c-interface-database.o c-interface-database.cc mv -f .deps/c-interface-database.Tpo .deps/c-interface-database.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-gui.o -MD -MP -MF .deps/c-interface-gui.Tpo -c -o c-interface-gui.o c-interface-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-gui.cc:72: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-gui.cc:6062:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-gui.cc:6062:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-gui.Tpo .deps/c-interface-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-gtk2.o -MD -MP -MF .deps/c-interface-gtk2.Tpo -c -o c-interface-gtk2.o c-interface-gtk2.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-gtk2.cc:66: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-gtk2.cc:356:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-gtk2.cc:356:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-gtk2.Tpo .deps/c-interface-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-info.o -MD -MP -MF .deps/c-interface-info.Tpo -c -o c-interface-info.o c-interface-info.cc In file included from ../coot-utils/coot-map-utils.hh:30:0, from c-interface-info.cc:71: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-info.cc:5215:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-info.cc:5215:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-info.Tpo .deps/c-interface-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-kk.o -MD -MP -MF .deps/c-interface-kk.Tpo -c -o c-interface-kk.o c-interface-kk.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../coot-utils/peak-search.hh:29, from c-interface-kk.cc:30: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-kk.cc:444:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-kk.cc:444:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-kk.Tpo .deps/c-interface-kk.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-ligands.o -MD -MP -MF .deps/c-interface-ligands.Tpo -c -o c-interface-ligands.o c-interface-ligands.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/cif_data_io.h:48, from ../coot-utils/read-sm-cif.hh:2, from c-interface-ligands.cc:53: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ligands.cc:3571:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ligands.cc:3571:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-ligands.Tpo .deps/c-interface-ligands.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-ligands-gui.o -MD -MP -MF .deps/c-interface-ligands-gui.Tpo -c -o c-interface-ligands-gui.o c-interface-ligands-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-ligands-gui.cc:59: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ligands-gui.cc:1232:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ligands-gui.cc:1232:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-ligands-gui.Tpo .deps/c-interface-ligands-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-maps.o -MD -MP -MF .deps/c-interface-maps.Tpo -c -o c-interface-maps.o c-interface-maps.cc In file included from ../coot-utils/coot-map-utils.hh:30:0, from c-interface-maps.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-maps.cc:2159:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-maps.cc:2159:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-maps.Tpo .deps/c-interface-maps.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-mmdb.o -MD -MP -MF .deps/c-interface-mmdb.Tpo -c -o c-interface-mmdb.o c-interface-mmdb.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-mmdb.cc:40: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mmdb.cc:492:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mmdb.cc:492:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-mmdb.Tpo .deps/c-interface-mmdb.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-mogul.o -MD -MP -MF .deps/c-interface-mogul.Tpo -c -o c-interface-mogul.o c-interface-mogul.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-mogul.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mogul.cc:935:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mogul.cc:935:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-mogul.Tpo .deps/c-interface-mogul.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-mogul-scripting.o -MD -MP -MF .deps/c-interface-mogul-scripting.Tpo -c -o c-interface-mogul-scripting.o c-interface-mogul-scripting.cc mv -f .deps/c-interface-mogul-scripting.Tpo .deps/c-interface-mogul-scripting.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-mutate.o -MD -MP -MF .deps/c-interface-mutate.Tpo -c -o c-interface-mutate.o c-interface-mutate.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_types.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/clipper-ccp4.h:8, from c-interface-mutate.cc:45: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mutate.cc:498:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-mutate.cc:498:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-mutate.Tpo .deps/c-interface-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-ncs.o -MD -MP -MF .deps/c-interface-ncs.Tpo -c -o c-interface-ncs.o c-interface-ncs.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-ncs.cc:56: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ncs.cc:1128:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-ncs.cc:1128:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-ncs.Tpo .deps/c-interface-ncs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-network.o -MD -MP -MF .deps/c-interface-network.Tpo -c -o c-interface-network.o c-interface-network.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-network.cc:50: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-network.cc:460:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-network.cc:460:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-network.Tpo .deps/c-interface-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-nucleotides.o -MD -MP -MF .deps/c-interface-nucleotides.Tpo -c -o c-interface-nucleotides.o c-interface-nucleotides.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-nucleotides.cc:38: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-nucleotides.cc:348:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-nucleotides.cc:348:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-nucleotides.Tpo .deps/c-interface-nucleotides.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-python.o -MD -MP -MF .deps/c-interface-python.Tpo -c -o c-interface-python.o c-interface-python.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-python.cc:39: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-python.cc:159:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-python.cc:159:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-python.Tpo .deps/c-interface-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-pisa.o -MD -MP -MF .deps/c-interface-pisa.Tpo -c -o c-interface-pisa.o c-interface-pisa.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-pisa.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-pisa.cc:993:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-pisa.cc:993:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-pisa.Tpo .deps/c-interface-pisa.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-pisa-gui.o -MD -MP -MF .deps/c-interface-pisa-gui.Tpo -c -o c-interface-pisa-gui.o c-interface-pisa-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-pisa-gui.cc:32: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-pisa-gui.cc:169:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-pisa-gui.cc:169:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-pisa-gui.Tpo .deps/c-interface-pisa-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-preferences.o -MD -MP -MF .deps/c-interface-preferences.Tpo -c -o c-interface-preferences.o c-interface-preferences.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-preferences.cc:63: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-preferences.cc:1471:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-preferences.cc:1471:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-preferences.Tpo .deps/c-interface-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-refine.o -MD -MP -MF .deps/c-interface-refine.Tpo -c -o c-interface-refine.o c-interface-refine.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-refine.cc:40: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-refine.cc:1096:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-refine.cc:1096:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-refine.Tpo .deps/c-interface-refine.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-residues.o -MD -MP -MF .deps/c-interface-residues.Tpo -c -o c-interface-residues.o c-interface-residues.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-residues.cc:37: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-residues.cc:690:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-residues.cc:690:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-residues.Tpo .deps/c-interface-residues.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-refmac.o -MD -MP -MF .deps/c-interface-refmac.Tpo -c -o c-interface-refmac.o c-interface-refmac.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-refmac.cc:67: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-refmac.cc:1363:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-refmac.cc:1363:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-refmac.Tpo .deps/c-interface-refmac.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-scm.o -MD -MP -MF .deps/c-interface-scm.Tpo -c -o c-interface-scm.o c-interface-scm.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-scm.cc:35: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-scm.cc:163:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-scm.cc:163:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-scm.Tpo .deps/c-interface-scm.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-sequence.o -MD -MP -MF .deps/c-interface-sequence.Tpo -c -o c-interface-sequence.o c-interface-sequence.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-sequence.cc:34: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sequence.cc:106:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sequence.cc:106:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-sequence.Tpo .deps/c-interface-sequence.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-sfs.o -MD -MP -MF .deps/c-interface-sfs.Tpo -c -o c-interface-sfs.o c-interface-sfs.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/cif_data_io.h:48, from c-interface-sfs.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::ABCD, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::D_sigD, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI_ano, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF_ano, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sfs.cc:119:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-sfs.Tpo .deps/c-interface-sfs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-sharpen.o -MD -MP -MF .deps/c-interface-sharpen.Tpo -c -o c-interface-sharpen.o c-interface-sharpen.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-sharpen.cc:29: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sharpen.cc:102:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-sharpen.cc:102:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-sharpen.Tpo .deps/c-interface-sharpen.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-superpose.o -MD -MP -MF .deps/c-interface-superpose.Tpo -c -o c-interface-superpose.o c-interface-superpose.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-superpose.cc:38: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-superpose.cc:853:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-superpose.cc:853:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-superpose.Tpo .deps/c-interface-superpose.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-validate.o -MD -MP -MF .deps/c-interface-validate.Tpo -c -o c-interface-validate.o c-interface-validate.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-validate.cc:54: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-validate.cc:2561:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-validate.cc:2561:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-validate.Tpo .deps/c-interface-validate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-view.o -MD -MP -MF .deps/c-interface-view.Tpo -c -o c-interface-view.o c-interface-view.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-view.cc:34: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-view.cc:149:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-view.cc:149:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-view.Tpo .deps/c-interface-view.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-widgets.o -MD -MP -MF .deps/c-interface-widgets.Tpo -c -o c-interface-widgets.o c-interface-widgets.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-widgets.cc:35: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-widgets.cc:284:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-widgets.cc:284:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-widgets.Tpo .deps/c-interface-widgets.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-waters.o -MD -MP -MF .deps/c-interface-waters.Tpo -c -o c-interface-waters.o c-interface-waters.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-waters.cc:56: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-waters.cc:688:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-waters.cc:688:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-waters.Tpo .deps/c-interface-waters.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-waters-gui.o -MD -MP -MF .deps/c-interface-waters-gui.Tpo -c -o c-interface-waters-gui.o c-interface-waters-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from c-interface-waters-gui.cc:56: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-waters-gui.cc:580:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-waters-gui.cc:580:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-waters-gui.Tpo .deps/c-interface-waters-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface.o -MD -MP -MF .deps/c-interface.Tpo -c -o c-interface.o c-interface.cc In file included from ../coot-utils/coot-map-utils.hh:30:0, from c-interface.cc:107: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface.cc:8363:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface.cc:8363:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface.Tpo .deps/c-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT c-interface-test.o -MD -MP -MF .deps/c-interface-test.Tpo -c -o c-interface-test.o c-interface-test.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/cif_data_io.h:48, from ../coot-utils/read-sm-cif.hh:2, from c-interface-test.cc:105: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-test.cc:789:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: c-interface-test.cc:789:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cif/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/c-interface-test.Tpo .deps/c-interface-test.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT cc-interface-png.o -MD -MP -MF .deps/cc-interface-png.Tpo -c -o cc-interface-png.o cc-interface-png.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/Python.h:8:0, from cc-interface-png.cc:11: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] /usr/include/features.h:164:0: note: this is the location of the previous definition /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1216:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] /usr/include/features.h:166:0: note: this is the location of the previous definition In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from cc-interface-png.cc:29: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: cc-interface-png.cc:225:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: cc-interface-png.cc:225:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/cc-interface-png.Tpo .deps/cc-interface-png.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT cc-interface-user-defined-atom-colours.o -MD -MP -MF .deps/cc-interface-user-defined-atom-colours.Tpo -c -o cc-interface-user-defined-atom-colours.o cc-interface-user-defined-atom-colours.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from ./molecule-class-info.h:62, from ./graphics-info.h:75, from cc-interface-user-defined-atom-colours.hh:6, from cc-interface-user-defined-atom-colours.cc:22: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: cc-interface-user-defined-atom-colours.cc:110:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: cc-interface-user-defined-atom-colours.cc:110:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/cc-interface-user-defined-atom-colours.Tpo .deps/cc-interface-user-defined-atom-colours.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT callbacks.o -MD -MP -MF .deps/callbacks.Tpo -c -o callbacks.o callbacks.c callbacks.c: In function ‘on_cif_dictionary_fileselection_ok_button_clicked’: callbacks.c:2746:7: warning: variable ‘new_compid_idx’ set but not used [-Wunused-but-set-variable] callbacks.c: In function ‘on_cif_dictionary_filechooserdialog1_response’: callbacks.c:10919:7: warning: variable ‘new_compid_idx’ set but not used [-Wunused-but-set-variable] mv -f .deps/callbacks.Tpo .deps/callbacks.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT cfc.o -MD -MP -MF .deps/cfc.Tpo -c -o cfc.o cfc.cc mv -f .deps/cfc.Tpo .deps/cfc.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT change-dir.o -MD -MP -MF .deps/change-dir.Tpo -c -o change-dir.o change-dir.cc change-dir.cc: In function ‘void change_directory_maybe()’: change-dir.cc:58:17: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] change-dir.cc:63:13: warning: ignoring return value of ‘int chdir(const char*)’, declared with attribute warn_unused_result [-Wunused-result] mv -f .deps/change-dir.Tpo .deps/change-dir.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT cmtz-interface.o -MD -MP -MF .deps/cmtz-interface.Tpo -c -o cmtz-interface.o cmtz-interface.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_types.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h:49, from cmtz-interface.cc:46: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: cmtz-interface.cc:1168:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: cmtz-interface.cc:1168:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/cmtz-interface.Tpo .deps/cmtz-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT command-line.o -MD -MP -MF .deps/command-line.Tpo -c -o command-line.o command-line.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from command-line.cc:63: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: command-line.cc:461:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: command-line.cc:461:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/command-line.Tpo .deps/command-line.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT command-line-extern.o -MD -MP -MF .deps/command-line-extern.Tpo -c -o command-line-extern.o command-line-extern.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from command-line-extern.cc:41: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: command-line-extern.cc:177:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: command-line-extern.cc:177:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/command-line-extern.Tpo .deps/command-line-extern.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-colour.o -MD -MP -MF .deps/coot-colour.Tpo -c -o coot-colour.o coot-colour.cc mv -f .deps/coot-colour.Tpo .deps/coot-colour.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o coot-align.cc mv -f .deps/coot-align.Tpo .deps/coot-align.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT coot-glue-gtk2.o -MD -MP -MF .deps/coot-glue-gtk2.Tpo -c -o coot-glue-gtk2.o coot-glue-gtk2.c mv -f .deps/coot-glue-gtk2.Tpo .deps/coot-glue-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-glue-gtk2-python.o -MD -MP -MF .deps/coot-glue-gtk2-python.Tpo -c -o coot-glue-gtk2-python.o coot-glue-gtk2-python.cc mv -f .deps/coot-glue-gtk2-python.Tpo .deps/coot-glue-gtk2-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-hydrogens.o -MD -MP -MF .deps/coot-hydrogens.Tpo -c -o coot-hydrogens.o coot-hydrogens.cc mv -f .deps/coot-hydrogens.Tpo .deps/coot-hydrogens.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot_pythonmodule.o -MD -MP -MF .deps/coot_pythonmodule.Tpo -c -o coot_pythonmodule.o coot_pythonmodule.cc mv -f .deps/coot_pythonmodule.Tpo .deps/coot_pythonmodule.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot-setup-python.o -MD -MP -MF .deps/coot-setup-python.Tpo -c -o coot-setup-python.o coot-setup-python.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from coot-setup-python.cc:40: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: coot-setup-python.cc:231:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: coot-setup-python.cc:231:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/coot-setup-python.Tpo .deps/coot-setup-python.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot_wrap_guile.o -MD -MP -MF .deps/coot_wrap_guile.Tpo -c -o coot_wrap_guile.o coot_wrap_guile.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/Python.h:8:0, from coot_wrap_guile.cc:4: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1194:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] /usr/include/features.h:164:0: note: this is the location of the previous definition /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7/pyconfig.h:1216:0: warning: "_XOPEN_SOURCE" redefined [enabled by default] /usr/include/features.h:166:0: note: this is the location of the previous definition In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from ./molecule-class-info.h:62, from ./graphics-info.h:75, from cc-interface-user-defined-atom-colours.hh:6, from coot_wrap_guile.cc:1418: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: coot_wrap_guile.cc:52864:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: coot_wrap_guile.cc:52864:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] coot_wrap_guile.cc: In function ‘scm_unused_struct* _wrap_IntVector_ref(SCM, SCM)’: coot_wrap_guile.cc:2721:40: warning: ‘result’ may be used uninitialised in this function [-Wuninitialized] coot_wrap_guile.cc: In function ‘scm_unused_struct* _wrap_IntVector_popN___(SCM)’: coot_wrap_guile.cc:2683:40: warning: ‘result’ may be used uninitialised in this function [-Wuninitialized] mv -f .deps/coot_wrap_guile.Tpo .deps/coot_wrap_guile.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT drag-and-drop.o -MD -MP -MF .deps/drag-and-drop.Tpo -c -o drag-and-drop.o drag-and-drop.cc mv -f .deps/drag-and-drop.Tpo .deps/drag-and-drop.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT draw-generic-display-objects.o -MD -MP -MF .deps/draw-generic-display-objects.Tpo -c -o draw-generic-display-objects.o draw-generic-display-objects.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from draw-generic-display-objects.cc:9: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: draw-generic-display-objects.cc:514:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: draw-generic-display-objects.cc:514:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/draw-generic-display-objects.Tpo .deps/draw-generic-display-objects.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT flev.o -MD -MP -MF .deps/flev.Tpo -c -o flev.o flev.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from flev.cc:41: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: flev.cc:1971:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: flev.cc:1971:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/flev.Tpo .deps/flev.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT generic-objects.o -MD -MP -MF .deps/generic-objects.Tpo -c -o generic-objects.o generic-objects.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from generic-objects.cc:43: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: generic-objects.cc:961:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: generic-objects.cc:961:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/generic-objects.Tpo .deps/generic-objects.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT geometry-graphs.o -MD -MP -MF .deps/geometry-graphs.Tpo -c -o geometry-graphs.o geometry-graphs.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/clipper.h:7, from ../ideal/lograma.h:23, from ../ideal/simple-restraint.hh:187, from geometry-graphs.hh:39, from geometry-graphs.cc:71: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: geometry-graphs.cc:1370:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: geometry-graphs.cc:1370:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/geometry-graphs.Tpo .deps/geometry-graphs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT get-residue.o -MD -MP -MF .deps/get-residue.Tpo -c -o get-residue.o get-residue.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from get-residue.cc:9: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: get-residue.cc:20:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: get-residue.cc:20:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/get-residue.Tpo .deps/get-residue.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT get-monomer.o -MD -MP -MF .deps/get-monomer.Tpo -c -o get-monomer.o get-monomer.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from get-monomer.cc:29: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: get-monomer.cc:241:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: get-monomer.cc:241:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/get-monomer.Tpo .deps/get-monomer.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT globjects.o -MD -MP -MF .deps/globjects.Tpo -c -o globjects.o globjects.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from globjects.cc:88: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: globjects.cc:4656:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: globjects.cc:4656:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/globjects.Tpo .deps/globjects.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT globularize.o -MD -MP -MF .deps/globularize.Tpo -c -o globularize.o globularize.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from globularize.cc:6: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: globularize.cc:20:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: globularize.cc:20:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/globularize.Tpo .deps/globularize.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info.o -MD -MP -MF .deps/graphics-info.Tpo -c -o graphics-info.o graphics-info.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../skeleton/graphical_skel.h:3, from graphics-info.cc:64: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info.cc:5772:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info.cc:5772:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info.Tpo .deps/graphics-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-defines.o -MD -MP -MF .deps/graphics-info-defines.Tpo -c -o graphics-info-defines.o graphics-info-defines.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-defines.cc:36: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-defines.cc:1880:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-defines.cc:1880:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-defines.Tpo .deps/graphics-info-defines.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-graphs.o -MD -MP -MF .deps/graphics-info-graphs.Tpo -c -o graphics-info-graphs.o graphics-info-graphs.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../skeleton/graphical_skel.h:3, from graphics-info-graphs.cc:56: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-graphs.cc:1706:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-graphs.cc:1706:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-graphs.Tpo .deps/graphics-info-graphs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-gui.o -MD -MP -MF .deps/graphics-info-gui.Tpo -c -o graphics-info-gui.o graphics-info-gui.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../skeleton/graphical_skel.h:3, from graphics-info-gui.cc:65: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-gui.cc:4048:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-gui.cc:4048:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-gui.Tpo .deps/graphics-info-gui.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-modelling.o -MD -MP -MF .deps/graphics-info-modelling.Tpo -c -o graphics-info-modelling.o graphics-info-modelling.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../skeleton/graphical_skel.h:3, from graphics-info-modelling.cc:75: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-modelling.cc:4405:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-modelling.cc:4405:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-modelling.Tpo .deps/graphics-info-modelling.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-navigation.o -MD -MP -MF .deps/graphics-info-navigation.Tpo -c -o graphics-info-navigation.o graphics-info-navigation.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-navigation.cc:60: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-navigation.cc:1206:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-navigation.cc:1206:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-navigation.Tpo .deps/graphics-info-navigation.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-navigation-gtk1.o -MD -MP -MF .deps/graphics-info-navigation-gtk1.Tpo -c -o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk1.cc mv -f .deps/graphics-info-navigation-gtk1.Tpo .deps/graphics-info-navigation-gtk1.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-navigation-gtk2.o -MD -MP -MF .deps/graphics-info-navigation-gtk2.Tpo -c -o graphics-info-navigation-gtk2.o graphics-info-navigation-gtk2.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-navigation-gtk2.cc:42: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-navigation-gtk2.cc:524:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-navigation-gtk2.cc:524:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-navigation-gtk2.Tpo .deps/graphics-info-navigation-gtk2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-preferences.o -MD -MP -MF .deps/graphics-info-preferences.Tpo -c -o graphics-info-preferences.o graphics-info-preferences.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-preferences.cc:35: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-preferences.cc:1004:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-preferences.cc:1004:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-preferences.Tpo .deps/graphics-info-preferences.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-network.o -MD -MP -MF .deps/graphics-info-network.Tpo -c -o graphics-info-network.o graphics-info-network.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-network.cc:8: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-network.cc:180:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-network.cc:180:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-network.Tpo .deps/graphics-info-network.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-mutate.o -MD -MP -MF .deps/graphics-info-mutate.Tpo -c -o graphics-info-mutate.o graphics-info-mutate.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info-mutate.cc:64: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-mutate.cc:397:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-mutate.cc:397:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-mutate.Tpo .deps/graphics-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-lsq.o -MD -MP -MF .deps/graphics-info-lsq.Tpo -c -o graphics-info-lsq.o graphics-info-lsq.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info-lsq.cc:53: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-lsq.cc:127:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-lsq.cc:127:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-lsq.Tpo .deps/graphics-info-lsq.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-pick.o -MD -MP -MF .deps/graphics-info-pick.Tpo -c -o graphics-info-pick.o graphics-info-pick.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-pick.cc:42: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-pick.cc:834:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-pick.cc:834:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-pick.Tpo .deps/graphics-info-pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-refmac.o -MD -MP -MF .deps/graphics-info-refmac.Tpo -c -o graphics-info-refmac.o graphics-info-refmac.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../skeleton/graphical_skel.h:3, from graphics-info-refmac.cc:72: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-refmac.cc:1040:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-refmac.cc:1040:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-refmac.Tpo .deps/graphics-info-refmac.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-render.o -MD -MP -MF .deps/graphics-info-render.Tpo -c -o graphics-info-render.o graphics-info-render.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-render.cc:38: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-render.cc:1108:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-render.cc:1108:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-render.Tpo .deps/graphics-info-render.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-residues.o -MD -MP -MF .deps/graphics-info-residues.Tpo -c -o graphics-info-residues.o graphics-info-residues.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-residues.cc:30: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-residues.cc:477:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-residues.cc:477:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-residues.Tpo .deps/graphics-info-residues.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-scripting.o -MD -MP -MF .deps/graphics-info-scripting.Tpo -c -o graphics-info-scripting.o graphics-info-scripting.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-scripting.cc:8: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-scripting.cc:196:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-scripting.cc:196:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-scripting.Tpo .deps/graphics-info-scripting.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-state.o -MD -MP -MF .deps/graphics-info-state.Tpo -c -o graphics-info-state.o graphics-info-state.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-state.cc:37: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-state.cc:1129:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-state.cc:1129:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-state.Tpo .deps/graphics-info-state.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-info-superpose.o -MD -MP -MF .deps/graphics-info-superpose.Tpo -c -o graphics-info-superpose.o graphics-info-superpose.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from graphics-info-superpose.cc:33: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-superpose.cc:687:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: graphics-info-superpose.cc:687:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/graphics-info-superpose.Tpo .deps/graphics-info-superpose.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT graphics-ligand-view.o -MD -MP -MF .deps/graphics-ligand-view.Tpo -c -o graphics-ligand-view.o graphics-ligand-view.cc mv -f .deps/graphics-ligand-view.Tpo .deps/graphics-ligand-view.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT gl-matrix.o -MD -MP -MF .deps/gl-matrix.Tpo -c -o gl-matrix.o gl-matrix.cc mv -f .deps/gl-matrix.Tpo .deps/gl-matrix.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT gtk-manual.o -MD -MP -MF .deps/gtk-manual.Tpo -c -o gtk-manual.o gtk-manual.cc mv -f .deps/gtk-manual.Tpo .deps/gtk-manual.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT gtk-widget-conversion-utils.o -MD -MP -MF .deps/gtk-widget-conversion-utils.Tpo -c -o gtk-widget-conversion-utils.o gtk-widget-conversion-utils.cc mv -f .deps/gtk-widget-conversion-utils.Tpo .deps/gtk-widget-conversion-utils.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT gtk2-interface.o -MD -MP -MF .deps/gtk2-interface.Tpo -c -o gtk2-interface.o gtk2-interface.c gtk2-interface.c: In function ‘create_coot_references_dialog’: gtk2-interface.c:27184:15: warning: variable ‘tmp_toolbar_icon_size’ set but not used [-Wunused-but-set-variable] gtk2-interface.c: In function ‘create_multi_residue_torsion_dialog’: gtk2-interface.c:28382:7: warning: ‘gdk_pixbuf_unref’ is deprecated (declared at /usr/include/gdk-pixbuf-2.0/gdk-pixbuf/gdk-pixbuf-core.h:243): Use 'g_object_unref' instead [-Wdeprecated-declarations] mv -f .deps/gtk2-interface.Tpo .deps/gtk2-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT interface.o -MD -MP -MF .deps/interface.Tpo -c -o interface.o interface.c mv -f .deps/interface.Tpo .deps/interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT lbg-callbacks-outer.o -MD -MP -MF .deps/lbg-callbacks-outer.Tpo -c -o lbg-callbacks-outer.o lbg-callbacks-outer.cc mv -f .deps/lbg-callbacks-outer.Tpo .deps/lbg-callbacks-outer.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT lbg-interface.o -MD -MP -MF .deps/lbg-interface.Tpo -c -o lbg-interface.o lbg-interface.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from lbg-interface.cc:36: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: lbg-interface.cc:199:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: lbg-interface.cc:199:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/lbg-interface.Tpo .deps/lbg-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info.o -MD -MP -MF .deps/molecule-class-info.Tpo -c -o molecule-class-info.o molecule-class-info.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/container_hkl.h:50:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_types.h:49, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/ccp4_mtz_io.h:49, from molecule-class-info.cc:50: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info.cc:8731:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info.cc:8731:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/ccp4/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info.Tpo .deps/molecule-class-info.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-bonds.o -MD -MP -MF .deps/molecule-class-info-bonds.Tpo -c -o molecule-class-info-bonds.o molecule-class-info-bonds.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-bonds.cc:22: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-bonds.cc:149:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-bonds.cc:149:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-bonds.Tpo .deps/molecule-class-info-bonds.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-maps.o -MD -MP -MF .deps/molecule-class-info-maps.Tpo -c -o molecule-class-info-maps.o molecule-class-info-maps.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-maps.cc:47: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Flag, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps.cc:3343:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::Phi_fom, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps.cc:3343:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps.cc:3343:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps.cc:3343:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-maps.Tpo .deps/molecule-class-info-maps.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-maps-2.o -MD -MP -MF .deps/molecule-class-info-maps-2.Tpo -c -o molecule-class-info-maps-2.o molecule-class-info-maps-2.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-maps-2.cc:23: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps-2.cc:155:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-maps-2.cc:155:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-maps-2.Tpo .deps/molecule-class-info-maps-2.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-kdc.o -MD -MP -MF .deps/molecule-class-info-kdc.Tpo -c -o molecule-class-info-kdc.o molecule-class-info-kdc.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-kdc.cc:32: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-kdc.cc:143:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-kdc.cc:143:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-kdc.Tpo .deps/molecule-class-info-kdc.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-dots.o -MD -MP -MF .deps/molecule-class-info-dots.Tpo -c -o molecule-class-info-dots.o molecule-class-info-dots.cc mv -f .deps/molecule-class-info-dots.Tpo .deps/molecule-class-info-dots.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-dots-internal.o -MD -MP -MF .deps/molecule-class-info-dots-internal.Tpo -c -o molecule-class-info-dots-internal.o molecule-class-info-dots-internal.cc mv -f .deps/molecule-class-info-dots-internal.Tpo .deps/molecule-class-info-dots-internal.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-other.o -MD -MP -MF .deps/molecule-class-info-other.Tpo -c -o molecule-class-info-other.o molecule-class-info-other.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/cns_hkl_io.h:49, from molecule-class-info-other.cc:54: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-other.cc:8931:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-other.cc:8931:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/cns/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-other.Tpo .deps/molecule-class-info-other.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-build.o -MD -MP -MF .deps/molecule-class-info-build.Tpo -c -o molecule-class-info-build.o molecule-class-info-build.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-build.cc:34: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-build.cc:499:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-build.cc:499:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-build.Tpo .deps/molecule-class-info-build.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-mutate.o -MD -MP -MF .deps/molecule-class-info-mutate.Tpo -c -o molecule-class-info-mutate.o molecule-class-info-mutate.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_compute.h:48, from molecule-class-info-mutate.cc:42: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-mutate.cc:1778:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-mutate.cc:1778:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-mutate.Tpo .deps/molecule-class-info-mutate.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-residues.o -MD -MP -MF .deps/molecule-class-info-residues.Tpo -c -o molecule-class-info-residues.o molecule-class-info-residues.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from molecule-class-info-residues.cc:45: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-residues.cc:2231:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-residues.cc:2231:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-residues.Tpo .deps/molecule-class-info-residues.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-refine.o -MD -MP -MF .deps/molecule-class-info-refine.Tpo -c -o molecule-class-info-refine.o molecule-class-info-refine.cc In file included from ../coot-utils/coot-map-utils.hh:30:0, from molecule-class-info-refine.cc:36: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-refine.cc:1385:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-refine.cc:1385:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-refine.Tpo .deps/molecule-class-info-refine.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-kk.o -MD -MP -MF .deps/molecule-class-info-kk.Tpo -c -o molecule-class-info-kk.o molecule-class-info-kk.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-kk.cc:25: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-kk.cc:130:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-kk.cc:130:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-kk.Tpo .deps/molecule-class-info-kk.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-surface.o -MD -MP -MF .deps/molecule-class-info-surface.Tpo -c -o molecule-class-info-surface.o molecule-class-info-surface.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from molecule-class-info-surface.cc:39: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-surface.cc:186:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-surface.cc:186:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-surface.Tpo .deps/molecule-class-info-surface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-patterson.o -MD -MP -MF .deps/molecule-class-info-patterson.Tpo -c -o molecule-class-info-patterson.o molecule-class-info-patterson.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-patterson.cc:45: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::I_sigI, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-patterson.cc:240:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-patterson.cc:240:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-patterson.cc:240:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-patterson.Tpo .deps/molecule-class-info-patterson.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-ncs.o -MD -MP -MF .deps/molecule-class-info-ncs.Tpo -c -o molecule-class-info-ncs.o molecule-class-info-ncs.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-ncs.cc:47: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-ncs.cc:2672:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-ncs.cc:2672:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-ncs.Tpo .deps/molecule-class-info-ncs.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT molecule-class-info-widget-work.o -MD -MP -MF .deps/molecule-class-info-widget-work.Tpo -c -o molecule-class-info-widget-work.o molecule-class-info-widget-work.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from molecule-class-info-widget-work.cc:32: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-widget-work.cc:570:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: molecule-class-info-widget-work.cc:570:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/molecule-class-info-widget-work.Tpo .deps/molecule-class-info-widget-work.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT nsv.o -MD -MP -MF .deps/nsv.Tpo -c -o nsv.o nsv.cc mv -f .deps/nsv.Tpo .deps/nsv.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT pick.o -MD -MP -MF .deps/pick.Tpo -c -o pick.o pick.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from pick.cc:43: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: pick.cc:446:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: pick.cc:446:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/pick.Tpo .deps/pick.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT probe-clash-score.o -MD -MP -MF .deps/probe-clash-score.Tpo -c -o probe-clash-score.o probe-clash-score.cc mv -f .deps/probe-clash-score.Tpo .deps/probe-clash-score.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT protein_db-interface.o -MD -MP -MF .deps/protein_db-interface.Tpo -c -o protein_db-interface.o protein_db-interface.cc mv -f .deps/protein_db-interface.Tpo .deps/protein_db-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT read-phs.o -MD -MP -MF .deps/read-phs.Tpo -c -o read-phs.o read-phs.c read-phs.c: In function ‘phs_pdb_cell_symm’: read-phs.c:239:8: warning: variable ‘imol’ set but not used [-Wunused-but-set-variable] mv -f .deps/read-phs.Tpo .deps/read-phs.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT read-cif.o -MD -MP -MF .deps/read-cif.Tpo -c -o read-cif.o read-cif.c mv -f .deps/read-cif.Tpo .deps/read-cif.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT rama_mousey.o -MD -MP -MF .deps/rama_mousey.Tpo -c -o rama_mousey.o rama_mousey.cc mv -f .deps/rama_mousey.Tpo .deps/rama_mousey.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT rama_plot.o -MD -MP -MF .deps/rama_plot.Tpo -c -o rama_plot.o rama_plot.cc mv -f .deps/rama_plot.Tpo .deps/rama_plot.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT restraints-editor.o -MD -MP -MF .deps/restraints-editor.Tpo -c -o restraints-editor.o restraints-editor.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from restraints-editor.cc:54: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: restraints-editor.cc:1457:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: restraints-editor.cc:1457:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/restraints-editor.Tpo .deps/restraints-editor.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT sdf-interface.o -MD -MP -MF .deps/sdf-interface.Tpo -c -o sdf-interface.o sdf-interface.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from sdf-interface.cc:43: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: sdf-interface.cc:243:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: sdf-interface.cc:243:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/sdf-interface.Tpo .deps/sdf-interface.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT sequence-view.o -MD -MP -MF .deps/sequence-view.Tpo -c -o sequence-view.o sequence-view.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from sequence-view.cc:38: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: sequence-view.cc:691:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: sequence-view.cc:691:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/sequence-view.Tpo .deps/sequence-view.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT seq-view-interface.o -MD -MP -MF .deps/seq-view-interface.Tpo -c -o seq-view-interface.o seq-view-interface.c mv -f .deps/seq-view-interface.Tpo .deps/seq-view-interface.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.c mv -f .deps/support.Tpo .deps/support.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT support-gtk2-extras.o -MD -MP -MF .deps/support-gtk2-extras.Tpo -c -o support-gtk2-extras.o support-gtk2-extras.c mv -f .deps/support-gtk2-extras.Tpo .deps/support-gtk2-extras.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT testing.o -MD -MP -MF .deps/testing.Tpo -c -o testing.o testing.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../ligand/ligand.hh:35, from ../ligand/wligand.hh:25, from testing.cc:49: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: testing.cc:3045:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: testing.cc:3045:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/testing.Tpo .deps/testing.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT testing-2.o -MD -MP -MF .deps/testing-2.Tpo -c -o testing-2.o testing-2.cc mv -f .deps/testing-2.Tpo .deps/testing-2.Po gcc -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -g -O2 -Wall -Wunused -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c mv -f .deps/trackball.Tpo .deps/trackball.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT user-mods.o -MD -MP -MF .deps/user-mods.Tpo -c -o user-mods.o user-mods.cc mv -f .deps/user-mods.Tpo .deps/user-mods.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT xmap-utils.o -MD -MP -MF .deps/xmap-utils.Tpo -c -o xmap-utils.o xmap-utils.cc mv -f .deps/xmap-utils.Tpo .deps/xmap-utils.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT view.o -MD -MP -MF .deps/view.Tpo -c -o view.o view.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from molecule-class-info.h:62, from graphics-info.h:75, from view.cc:27: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: view.cc:268:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: view.cc:268:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/view.Tpo .deps/view.Po g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT coot_wrap_python.o -MD -MP -MF .deps/coot_wrap_python.Tpo -c -o coot_wrap_python.o coot_wrap_python.cc In file included from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_datatypes.h:49:0, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/function_object_bases.h:50, from /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/skeleton.h:50, from ../build/CalphaBuild.hh:26, from ./molecule-class-info.h:62, from ./graphics-info.h:75, from cc-interface-user-defined-atom-colours.hh:6, from coot_wrap_python.cc:3238: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_sigF, clipper::HKL_data_base = clipper::HKL_data_base]’: coot_wrap_python.cc:72371:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h: In member function ‘void clipper::HKL_data::mask(const clipper::HKL_data_base&) [with T = clipper::datatypes::F_phi, clipper::HKL_data_base = clipper::HKL_data_base]’: coot_wrap_python.cc:72371:1: instantiated from here /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/clipper/contrib/../core/hkl_data.h:421:19: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] mv -f .deps/coot_wrap_python.Tpo .deps/coot_wrap_python.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-bin main.o boot-python.o atom-overlaps.o git-revision-count.o scm-boot-guile.o c-interface-analysis.o c-interface-bonds.o c-interface-build.o c-interface-build-morph.o c-interface-build-main-chain.o c-interface-build-side-chain.o c-interface-build-symmetry.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-refmac.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-sharpen.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o cc-interface-png.o cc-interface-user-defined-atom-colours.o callbacks.o cfc.o change-dir.o cmtz-interface.o command-line.o command-line-extern.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot-setup-python.o coot_wrap_guile.o drag-and-drop.o draw-generic-display-objects.o flev.o generic-objects.o geometry-graphs.o get-residue.o get-monomer.o globjects.o globularize.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-bonds.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-dots-internal.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-patterson.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o sequence-view.o seq-view-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o user-mods.o xmap-utils.o view.o coot_wrap_python.o ../lbg/libcoot-lidia.la ../pli/libcoot-pli.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../goograph/libcoot-goograph.la ../libgtkgraph/libcoot-gtkgraph.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libcoot-electrostatics.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lssm -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -lutil -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lguilegtk-2.0 -P -pthread -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lguile -lltdl -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgmp -lcrypt -lm -lltdl -Wl,--export-dynamic -pthread -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lgmodule-2.0 -lrt -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lglut -L/usr/X11R6/lib -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lcurl -L/lib64 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgoocanvas -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale\" -DPKGPYTHONDIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.3-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-bin main.o boot-python.o atom-overlaps.o git-revision-count.o scm-boot-guile.o c-interface-analysis.o c-interface-bonds.o c-interface-build.o c-interface-build-morph.o c-interface-build-main-chain.o c-interface-build-side-chain.o c-interface-build-symmetry.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-refmac.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-sharpen.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o cc-interface-png.o cc-interface-user-defined-atom-colours.o callbacks.o cfc.o change-dir.o cmtz-interface.o command-line.o command-line-extern.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot-setup-python.o coot_wrap_guile.o drag-and-drop.o draw-generic-display-objects.o flev.o generic-objects.o geometry-graphs.o get-residue.o get-monomer.o globjects.o globularize.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-bonds.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-dots-internal.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-patterson.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o sequence-view.o seq-view-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o user-mods.o xmap-utils.o view.o coot_wrap_python.o -Wl,-export-dynamic -P -pthread -Wl,--export-dynamic -pthread ../lbg/.libs/libcoot-lidia.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: -L/lib64 ../pli/.libs/libcoot-pli.a ../ligand/.libs/libcoot-ligand.a ../lidia-core/.libs/libcoot-lidia-core.a ../goograph/.libs/libcoot-goograph.a ../libgtkgraph/.libs/libcoot-gtkgraph.a ../density-contour/.libs/libcoot-isosurface.a ../build/.libs/libcoot-cabuild.a ../skeleton/.libs/libcoot-skeleton.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles/.libs/libcoot-AngleInfo.a ../angles/.libs/libcoot-AngleInfo.a ../db-main/.libs/libcoot-db-main.a ../high-res/.libs/libcoot-high-res.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand/.libs/libcoot-ligand.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main/.libs/libcoot-db-main.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils/.libs/libccp4mg-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis/.libs/libcoot-analysis.a ../ideal/.libs/libcoot-ideal.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-extras.a ../geometry/.libs/libcoot-geometry.a ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../coot-surface/.libs/libcoot-surface.a -L/usr/X11R6/lib /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface/.libs/libcoot-electrostatics.a ../surface/.libs/libcoot-electrostatics.a ../ccp4mg-utils/.libs/libccp4mg-utils.a -lpng ../coot-utils/.libs/libcoot-map-heavy.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-extras.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../utils/.libs/libcoot-utils.a ../mini-mol/.libs/libcoot-mini-mol.a ../analysis/.libs/libcoot-analysis.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a ../protein_db/.libs/libcoot-protein-db.a ../cootilus/.libs/libcootilus.a ../cootaneer/.libs/libcootaneer.a ../compat/.libs/libcoot-compat.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libssm.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so -lpython2.7 -lpthread -lutil /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libguilegtk-2.0.so -lgthread-2.0 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libguile.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgmp.so -lcrypt /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libltdl.so -ldl /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgtkglext-x11-1.0.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgdkglext-x11-1.0.so -lXmu -lXt -lSM -lICE -lgmodule-2.0 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libglut.so -lGL -lGLU -lXext -lX11 -lgnomecanvas-2 /usr/lib/x86_64-linux-gnu/libart_lgpl_2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcurl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libidn.so -lz -lrt /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 /usr/lib/x86_64-linux-gnu/libcairo.so -lpango-1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig -lgobject-2.0 -lglib-2.0 -pthread -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT dynarama-main.o -MD -MP -MF .deps/dynarama-main.Tpo -c -o dynarama-main.o dynarama-main.cc mv -f .deps/dynarama-main.Tpo .deps/dynarama-main.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o dynarama-bin dynarama-main.o rama_plot.o rama_mousey.o ../coords/libcoot-coords.la ../utils/libcoot-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-surface/libcoot-surface.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgoocanvas -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0 libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale\" -DPKGPYTHONDIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.3-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o dynarama-bin dynarama-main.o rama_plot.o rama_mousey.o ../coords/.libs/libcoot-coords.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a ../utils/.libs/libcoot-utils.a ../coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so ../coot-surface/.libs/libcoot-surface.a -L/usr/X11R6/lib /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface/.libs/libcoot-electrostatics.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libglut.so -lGLU -lXext -lX11 -lGL /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lm -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 /usr/lib/x86_64-linux-gnu/libcairo.so -lpango-1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig -lgobject-2.0 -lglib-2.0 -pthread -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib g++ -DPACKAGE_NAME=\"coot\" -DPACKAGE_TARNAME=\"coot\" -DPACKAGE_VERSION=\"0.8.9-pre\" -DPACKAGE_STRING=\"coot\ 0.8.9-pre\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.8.9-pre\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_OPENMP=1 -DHAVE_PYTHON=\"2.7\" -I. -I.. -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DHAVE_GNOME_CANVAS -pthread -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/atk-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/pixman-1 -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -pthread -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/gtkglext-1.0 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -DHAVE_GOOCANVAS -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/goocanvas-1.0 -pthread -I/usr/include/gtk-2.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/pango-1.0 -I/usr/include/gio-unix-2.0/ -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/libpng12 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DHAVE_SSMLIB -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DMMDB_HAS_LINK_DISTANCE -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/pygtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -MT density-score-by-residue-src.o -MD -MP -MF .deps/density-score-by-residue-src.Tpo -c -o density-score-by-residue-src.o density-score-by-residue-src.cc mv -f .deps/density-score-by-residue-src.Tpo .deps/density-score-by-residue-src.Po /bin/bash ../libtool --tag=CXX --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale"' -DPKGPYTHONDIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot"' -DDATADIR='"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018"' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-density-score-by-residue-bin density-score-by-residue-src.o ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../lidia-core/libcoot-lidia-core.la ../utils/libcoot-utils.la ../compat/libcoot-compat.la -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-minimol -lclipper-mmdb -lclipper-cns -lclipper-phs -lclipper-contrib -lclipper-core -lccp4c -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lmmdb2 -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/locale\" -DPKGPYTHONDIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot\" -DDATADIR=\"/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.3-python-gtk2\" "-DCOOT_BUILD_INFO_STRING=\"built by: No one logged on. build-host: ubuntu-server on: Tue 02 Jan 2329.30 GMT 2018\"" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -g -O -Wall -Wno-unused -o coot-density-score-by-residue-bin density-score-by-residue-src.o ../geometry/.libs/libcoot-geometry.a -L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -L=/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib:-L/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib: ../coords/.libs/libcoot-coords.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-shelx.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core/.libs/libcoot-lidia-core.a ../mini-mol/.libs/libcoot-mini-mol.a ../coot-utils/.libs/libcoot-map-utils.a ../coot-utils/.libs/libcoot-coord-utils.a ../coot-utils/.libs/libcoot-shelx.a ../lidia-core/.libs/libcoot-lidia-core.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils/.libs/libcoot-coord-utils.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry/.libs/libcoot-geometry.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol/.libs/libcoot-mini-mol.a /home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils/.libs/libcoot-utils.a ../utils/.libs/libcoot-utils.a ../compat/.libs/libcoot-compat.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libfftw.so -lpthread /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libmmdb2.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libgslcblas.so -lm -pthread -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib -Wl,-rpath -Wl,/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' Making all in data make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' Making all in rama-coeffs make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' Making all in cho-models make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' Making all in cho-acedrg make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' Making all in man make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' Making all in rama-data make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' Making all in doc make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' Making all in rcrane make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' make[1]: Nothing to be done for `all'. make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' Making all in pixmaps make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' Making all in icons make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[2]: Nothing to be done for `all'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[2]: Nothing to be done for `all-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre' sed -e 's/#GTK2 //' ./cootrc.template > cootrc make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre' 1 --------------------------------------------------------------- make install 1 ---------------------------------------------------------------- Making install in auxil make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' Making install in catcheck make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/catcheck' Making install in rama make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/rama' Making install in sec-str make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/sec-str' Making install in strand-analysis make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/strand-analysis' Making install in vectors make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil/vectors' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[3]: Nothing to be done for `install-exec-am'. make[3]: Nothing to be done for `install-data-am'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/auxil' Making install in scheme make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/scheme" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/scheme" /usr/bin/install -c -m 644 0-auto-rot.scm coot-utils.scm get-ebi.scm mutate.scm background-demo.scm demo-script.scm gtkin.scm my-readline.scm bit.scm extra-top-level.scm hello.scm raster3d.scm brute-lsqman.scm file-utils.scm junk.scm refmac.scm coot-gui.scm filter.scm libcheck.scm simple.scm coot.scm get-ebi.save.scm local-code.scm trivial.scm gap.scm remote-control.scm povray.scm coot-lsq.scm shelx.scm group-settings.scm fitting.scm americanisms.scm tips.scm tips-gui.scm generic-objects.scm cns2coot.scm extensions.scm ncs.scm create-server.scsh coot-crash-catcher.scm '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/scheme' /usr/bin/install -c -m 644 snarf-coot-docs.scm clear-backup.scm bones-reader.scm matrices.scm fascinating-things.scm shelx-extensions.scm parse-pisa-xml.scm check-for-updates.scm 3d-generator-import.scm gui-hole.scm gui-prosmart.scm get-recent-pdbe.scm json-reader.scm jligand.scm jligand-gui.scm redefine-functions.scm user-define-restraints.scm template-key-bindings.scm gui-add-linked-cho.scm ligand-check.scm run-mogul.scm contact-score-isolated-ligand.scm enhanced-ligand.scm gui-ligand-sliders.scm dictionary-generators.scm cho-restraints-from-models.scm '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/scheme' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/scheme' Making install in python make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot" /usr/bin/install -c -m 644 coot_utils.py get_ebi.py mutate.py background_demo.py hello.py raster3d.py brute_lsqman.py refmac.py coot_gui.py filter.py libcheck.py coot_load_modules.py local_code.py gap.py remote_control.py povray.py coot_lsq.py shelx.py group_settings.py fitting.py americanisms.py tips.py tips_gui.py generic_objects.py cns2coot.py extensions.py ncs.py create_server.py python_coot_docs.py clear_backup.py bones_reader.py shelx_extensions.py parse_pisa_xml.py check_for_updates.py 3d_generator_import.py gui_hole.py gui_prosmart.py get_recent_pdbe.py jligand.py jligand_gui.py '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot' /usr/bin/install -c -m 644 redefine_functions.py user_define_restraints.py template_key_bindings.py gui_add_linked_cho.py ligand_check.py run_mogul.py contact_score_isolated_ligand.py gui_contact_score_isolated_ligand.py enhanced_ligand.py gui_ligand_sliders.py dictionary_generators.py coot_toolbuttons.py rcrane_loader.py pdbe_validation_data.py ligand_validation_sliders.py chemical_feature_clusters.py res_spec_utils.py '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot' Byte-compiling python modules... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pyfitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pyncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.py3d_generator_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pyredefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pyligand_check.pyrun_mogul.pycontact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pyenhanced_ligand.pygui_ligand_sliders.pydictionary_generators.pycoot_toolbuttons.pyrcrane_loader.pypdbe_validation_data.pyligand_validation_sliders.pychemical_feature_clusters.pyres_spec_utils.py Byte-compiling python modules (optimized versions) ... coot_utils.pyget_ebi.pymutate.pybackground_demo.pyhello.pyraster3d.pybrute_lsqman.pyrefmac.pycoot_gui.pyfilter.pylibcheck.pycoot_load_modules.pylocal_code.pygap.pyremote_control.pypovray.pycoot_lsq.pyshelx.pygroup_settings.pyfitting.pyamericanisms.pytips.pytips_gui.pygeneric_objects.pycns2coot.pyextensions.pyncs.pycreate_server.pypython_coot_docs.pyclear_backup.pybones_reader.pyshelx_extensions.pyparse_pisa_xml.pycheck_for_updates.py3d_generator_import.pygui_hole.pygui_prosmart.pyget_recent_pdbe.pyjligand.pyjligand_gui.pyredefine_functions.pyuser_define_restraints.pytemplate_key_bindings.pygui_add_linked_cho.pyligand_check.pyrun_mogul.pycontact_score_isolated_ligand.pygui_contact_score_isolated_ligand.pyenhanced_ligand.pygui_ligand_sliders.pydictionary_generators.pycoot_toolbuttons.pyrcrane_loader.pypdbe_validation_data.pyligand_validation_sliders.pychemical_feature_clusters.pyres_spec_utils.py make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python' Making install in pdb-templates make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 ASN-NAG-via-NAG-ASN.pdb pyranose-pyranose-via-BETA1-4.pdb pyranose-pyranose-via-ALPHA1-2.pdb pyranose-pyranose-via-ALPHA1-3.pdb pyranose-pyranose-via-ALPHA1-6.pdb SIA-pyranose-via-ALPHA2-3.pdb link-by-torsion-to-pyranose-core-ALPHA1-2.tab link-by-torsion-to-pyranose-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-3.tab link-by-torsion-to-FUC-core-ALPHA1-2.tab link-by-torsion-to-FUC-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA1-6.tab link-by-torsion-to-pyranose-core-ALPHA2-3.tab link-by-torsion-to-pyranose-core-BETA1-2.tab link-by-torsion-to-pyranose-core-BETA1-3.tab link-by-torsion-to-pyranose-core-BETA1-4.tab link-by-torsion-to-pyranose-core-BETA1-6.tab link-by-torsion-to-pyranose-core-NAG-ASN.tab link-by-torsion-to-pyranose-core-XYP-BMA.tab NAG-decorations.tab BMA-decorations.tab MAN-decorations.tab GLC-decorations.tab GAL-decorations.tab FUC-decorations.tab FUL-decorations.tab XYP-decorations.tab theor-helix-70.pdb '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pdb-templates' Making install in macros make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/macros' Making install in compat make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-compat.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-compat.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-compat.la libtool: install: /usr/bin/install -c .libs/libcoot-compat.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-compat.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-compat.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-compat.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/compat" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/compat" /usr/bin/install -c -m 644 coot-getopt.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/compat' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/compat' Making install in utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-utils.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-utils.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-utils.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-utils.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-utils.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/utils" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/utils" /usr/bin/install -c -m 644 coot-utils.hh coot-fasta.hh dodec.hh win-compat.hh ctpl_stl.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/utils' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/utils' Making install in protein_db make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-protein-db.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-protein-db.la libtool: install: /usr/bin/install -c .libs/libcoot-protein-db.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-protein-db.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/protein_db" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/protein_db" /usr/bin/install -c -m 644 protein_db.h protein_db_utils.h rna_db.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/protein_db' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/protein_db" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/protein_db" /usr/bin/install -c -m 644 protein.db '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/protein_db' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/protein_db' Making install in mini-mol make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-mini-mol.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-mini-mol.la libtool: install: /usr/bin/install -c .libs/libcoot-mini-mol.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-mini-mol.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/mini-mol" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/mini-mol" /usr/bin/install -c -m 644 mini-mol.hh mini-mol-utils.hh atom-quads.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/mini-mol' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/mini-mol' Making install in geometry make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-geometry.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-geometry.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-geometry.la libtool: install: /usr/bin/install -c .libs/libcoot-geometry.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-geometry.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-compare-dictionaries coot-make-shelx-restraints coot-available-comp-id '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c coot-compare-dictionaries /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/coot-compare-dictionaries libtool: install: /usr/bin/install -c coot-make-shelx-restraints /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/coot-make-shelx-restraints libtool: install: /usr/bin/install -c coot-available-comp-id /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/coot-available-comp-id test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/geometry" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/geometry" /usr/bin/install -c -m 644 protein-geometry.hh read-sbase.hh lbg-graph.hh srs-interface.hh dict-utils.hh dict-mismatches.hh energy-lib.hh match-results.hh hb-types.hh main-chain.hh residue-and-atom-specs.hh chem_mods.hh mol-utils-2.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/geometry' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/geometry' Making install in coot-utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coord-utils.la libcoot-shelx.la libcoot-coord-extras.la libcoot-map-utils.la libcoot-map-heavy.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-shelx.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-shelx.la libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-extras.la libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-utils.la libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-heavy.la libtool: install: /usr/bin/install -c .libs/libcoot-coord-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-utils.a libtool: install: /usr/bin/install -c .libs/libcoot-shelx.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-shelx.a libtool: install: /usr/bin/install -c .libs/libcoot-coord-extras.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coord-extras.a libtool: install: /usr/bin/install -c .libs/libcoot-map-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-utils.a libtool: install: /usr/bin/install -c .libs/libcoot-map-heavy.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-map-heavy.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coot-utils" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coot-utils" /usr/bin/install -c -m 644 peak-search.hh coot-trim.hh coot-coord-utils.hh coot-map-utils.hh coot-coord-extras.hh coot-map-heavy.hh coot-lsq-types.h coot-shelx.hh coot-rama.hh xmap-stats.hh coot-h-bonds.hh lsq-improve.hh coot-hole.hh read-sm-cif.hh bonded-pairs.hh tree.hh helix-analysis.hh elastic.hh emma.hh glyco-torsions.hh coot-least-squares.hh coot-density-stats.hh atom-overlaps.hh reduce.hh secondary-structure-headers.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coot-utils' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-utils' Making install in surface make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-electrostatics.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-electrostatics.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-electrostatics.la libtool: install: /usr/bin/install -c .libs/libcoot-electrostatics.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-electrostatics.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-electrostatics.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-electrostatics.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/surface' Making install in coot-surface make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-surface.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-surface.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-surface.la libtool: install: /usr/bin/install -c .libs/libcoot-surface.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-surface.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-surface.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-surface.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coot-surface' Making install in lidia-core make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia-core.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia-core.la libtool: install: /usr/bin/install -c .libs/libcoot-lidia-core.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia-core.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lidia-core" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lidia-core" /usr/bin/install -c -m 644 lbg-shared.hh lbg-molfile.hh lig-build.hh rdkit-interface.hh use-rdkit.hh cod-types.hh neighbour-sorter.hh bond-record-container-t.hh bond-table-record-t.hh cod-atom-types.hh cod-atom-type-t.hh primes.hh chemical-feature-clusters.hh third-neighbour-info-t.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lidia-core' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lidia-core' Making install in coords make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-coords.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-coords.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coords.la libtool: install: /usr/bin/install -c .libs/libcoot-coords.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coords.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coords.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-coords.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coords" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coords" /usr/bin/install -c -m 644 Bond_lines.h Cartesian.h cos-sin.h mmdb.h mmdb-extras.h utils.h mmdb-crystal.h Bond_lines_ext.h coot-close.hh phenix-geo.hh ramachandran-container.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/coords' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/coords' Making install in angles make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-AngleInfo.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-AngleInfo.la libtool: install: /usr/bin/install -c .libs/libcoot-AngleInfo.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-AngleInfo.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/angles" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/angles" /usr/bin/install -c -m 644 AngleInfo.h ncube.h wrapped-ncube.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/angles' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/angles' Making install in skeleton make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-skeleton.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-skeleton.la libtool: install: /usr/bin/install -c .libs/libcoot-skeleton.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-skeleton.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/skeleton" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/skeleton" /usr/bin/install -c -m 644 graphical_skel.h dm-utils.h BuildCas.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/skeleton' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/skeleton' Making install in ccp4mg-utils make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libccp4mg-utils.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4mg-utils.la libtool: install: /usr/bin/install -c .libs/libccp4mg-utils.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libccp4mg-utils.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ccp4mg-utils" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ccp4mg-utils" /usr/bin/install -c -m 644 geomutil.h mgtree.h cartesian.h matrix.h quat.h ppmutil.h '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ccp4mg-utils' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ccp4mg-utils' Making install in density-contour make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-isosurface.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-isosurface.la libtool: install: /usr/bin/install -c .libs/libcoot-isosurface.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-isosurface.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/density-contour" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/density-contour" /usr/bin/install -c -m 644 Vectors.h CIsoSurface.h density-contour-triangles.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/density-contour' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/density-contour' Making install in db-main make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-db-main.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-db-main.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-db-main.la libtool: install: /usr/bin/install -c .libs/libcoot-db-main.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-db-main.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/db-main" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/db-main" /usr/bin/install -c -m 644 db-main.hh db-strands.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/db-main' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/db-main' Making install in analysis make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-analysis.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-analysis.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-analysis.la libtool: install: /usr/bin/install -c .libs/libcoot-analysis.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-analysis.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bfactan '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c coot-bfactan /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/coot-bfactan test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/analysis" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/analysis" /usr/bin/install -c -m 644 bfkurt.hh mogul-interface.hh stats.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/analysis' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/analysis' Making install in ideal make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ideal.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-ideal.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ideal.la libtool: install: /usr/bin/install -c .libs/libcoot-ideal.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ideal.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /usr/bin/install -c coot-mini-rsr '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" /bin/bash ../libtool --mode=install /usr/bin/install -c mini-rsr-bin '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec' libtool: install: /usr/bin/install -c mini-rsr-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/mini-rsr-bin test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ideal" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ideal" /usr/bin/install -c -m 644 test-indexing.hh simple-restraint.hh pepflip.hh regularize-minimol.hh lograma.h parallel-planes.hh torsion-bonds.hh extra-restraints.hh model-bond-deltas.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ideal' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ideal' Making install in ligand make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-ligand.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-ligand.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ligand.la libtool: install: /usr/bin/install -c .libs/libcoot-ligand.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-ligand.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /usr/bin/install -c findwaters findligand '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" /bin/bash ../libtool --mode=install /usr/bin/install -c findligand-bin findwaters-bin coot-make-ligands-db '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec' libtool: install: /usr/bin/install -c findligand-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/findligand-bin libtool: install: /usr/bin/install -c findwaters-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/findwaters-bin libtool: install: /usr/bin/install -c coot-make-ligands-db /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/coot-make-ligands-db test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data" /usr/bin/install -c -m 644 ligands-2016.db '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ligand" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ligand" /usr/bin/install -c -m 644 ligand.hh residue_by_phi_psi.hh wligand.hh monomer-utils.hh chi-angles.hh dunbrack.hh helix-placement.hh fast-ss-search.hh rigid-body.hh ideal-rna.hh rotamer.hh richardson-rotamer.hh torsion-general.hh primitive-chi-angles.hh dipole.hh base-pairing.hh backrub-rotamer.hh trace.hh multi-peptide.hh ligands-db.hh scored-coord.hh ligand-score-card.hh scored-molecule.hh map-point-cluster.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/ligand' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/ligand' Making install in high-res make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-high-res.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-high-res.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-high-res.la libtool: install: /usr/bin/install -c .libs/libcoot-high-res.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-high-res.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/high-res" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/high-res" /usr/bin/install -c -m 644 high-res.hh coot-atom-graph.hh coot-node-info.hh sequence-assignment.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/high-res' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/high-res' Making install in build make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/build' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/build' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-cabuild.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-cabuild.la libtool: install: /usr/bin/install -c .libs/libcoot-cabuild.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-cabuild.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/build" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/build" /usr/bin/install -c -m 644 CalphaBuild.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/build' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/build' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/build' Making install in greg-tests make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/greg-tests' Making install in python-tests make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/python-tests' Making install in tw make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-tw.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-tw.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-tw.la libtool: install: /usr/bin/install -c .libs/libcoot-tw.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-tw.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-tw.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-tw.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/tw" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/tw" /usr/bin/install -c -m 644 coot-tw.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/tw' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/tw' Making install in libgtkgraph make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-gtkgraph.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-gtkgraph.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-gtkgraph.la libtool: install: /usr/bin/install -c .libs/libcoot-gtkgraph.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-gtkgraph.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/libgtkgraph' Making install in lbg make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-lidia.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-lidia.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia.la libtool: install: /usr/bin/install -c .libs/libcoot-lidia.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-lidia.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c lidia '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c lidia /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/lidia test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps" /usr/bin/install -c -m 644 3-c-new.svg 6-c-shadow-experiment.svg single.svg 3-c-other.svg 6-c.svg sp3.svg 3-c.svg 7-c.svg stereo-out.svg 4-c.svg 8-c.svg TheStructorr_magnifying_glass-32.svg 5-c.svg Anonymous_Architetto_--_Chiave.svg TheStructorr_magnifying_glass.svg 6-c-arom.svg charge.svg triple.svg 6-c-exp-2.svg double.svg Trash-hydrogens-Andy_Trash_Can.svg face-smile.svg 05_Hotel_Icon_Hair_Salon.svg '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/lidia" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/lidia" /usr/bin/install -c -m 644 __init__.py fetch.py '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/lidia' Byte-compiling python modules... __init__.pyfetch.py Byte-compiling python modules (optimized versions) ... __init__.pyfetch.py test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lbg" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lbg" /usr/bin/install -c -m 644 lbg.hh w-atom.hh w-bond.hh wmolecule.hh topological-equivalence.hh graphics-c-interface-functions.hh lbg-drag-and-drop.hh qed-interface.hh alerts.hh solvent-exposure-difference.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/lbg' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 lbg.glade lbg-callbacks.cc '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/lbg' Making install in cootaneer make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootaneer' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootaneer' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcootaneer.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcootaneer.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootaneer.la libtool: install: /usr/bin/install -c .libs/libcootaneer.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootaneer.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootaneer.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootaneer.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 cootaneer-llk-2.40.dat '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootaneer' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootaneer' Making install in cootilus make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcootilus.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcootilus.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootilus.la libtool: install: /usr/bin/install -c .libs/libcootilus.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootilus.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootilus.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcootilus.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 nautilus_lib.pdb '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/cootilus' Making install in goograph make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-goograph.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-goograph.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-goograph.la libtool: install: /usr/bin/install -c .libs/libcoot-goograph.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-goograph.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/goograph' Making install in pli make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" /bin/bash ../libtool --mode=install /usr/bin/install -c libcoot-pli.la '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib' libtool: install: /usr/bin/install -c .libs/libcoot-pli.lai /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-pli.la libtool: install: /usr/bin/install -c .libs/libcoot-pli.a /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-pli.a libtool: install: chmod 644 /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-pli.a libtool: install: ranlib /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/libcoot-pli.a libtool: finish: PATH="/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin:/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/usr/bin:/bin:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc:/sbin" ldconfig -n /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib ---------------------------------------------------------------------- Libraries have been installed in: /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib If you ever happen to want to link against installed libraries in a given directory, LIBDIR, you must either use libtool, and specify the full pathname of the library, or use the `-LLIBDIR' flag during linking and do at least one of the following: - add LIBDIR to the `LD_LIBRARY_PATH' environment variable during execution - add LIBDIR to the `LD_RUN_PATH' environment variable during linking - use the `-Wl,-rpath -Wl,LIBDIR' linker flag - have your system administrator add LIBDIR to `/etc/ld.so.conf' See any operating system documentation about shared libraries for more information, such as the ld(1) and ld.so(8) manual pages. ---------------------------------------------------------------------- test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/pli" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/pli" /usr/bin/install -c -m 644 flev-annotations.hh protein-ligand-interactions.hh pi-stacking.hh specs.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot/pli' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pli' Making install in pyrogen make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib" test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" make install-exec-hook make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' make[3]: Nothing to be done for `install-exec-hook'. make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot" make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pyrogen' Making install in src make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-fix-nomenclature-errors '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' libtool: install: /usr/bin/install -c coot-fix-nomenclature-errors /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin/coot-fix-nomenclature-errors test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin" /usr/bin/install -c coot coot-density-score-by-residue dynarama '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/bin' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec" /bin/bash ../libtool --mode=install /usr/bin/install -c coot-bin dynarama-bin coot-density-score-by-residue-bin '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec' libtool: install: /usr/bin/install -c coot-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/coot-bin libtool: install: /usr/bin/install -c dynarama-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/dynarama-bin libtool: install: /usr/bin/install -c coot-density-score-by-residue-bin /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/libexec/coot-density-score-by-residue-bin test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" /usr/bin/install -c -m 644 coot.py coot.pth '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages' Byte-compiling python modules... coot.py Byte-compiling python modules (optimized versions) ... coot.py test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages" /usr/bin/install -c coot.py coot.pth '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot" /usr/bin/install -c -m 644 crunch-model.hh '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/include/coot' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 dynarama.glade '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/src' Making install in data make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' Making install in rama-coeffs make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/rama/zo-tables" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/rama/zo-tables" /usr/bin/install -c -m 644 all-non-pre-pro.tab coeffsolution.dat '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/rama/zo-tables' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/rama-coeffs' Making install in cho-models make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-models" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-models" /usr/bin/install -c -m 644 model-level-1-NAG-NAG-ASN-ASN.tab model-level-4-BMA-BETA1-6-BMA.tab model-level-5-MAN-ALPHA1-3-BMA.tab model-level-2-FUC-BETA1-3-NAG.tab model-level-4-BMA-BETA1-6-MAN.tab model-level-5-MAN-ALPHA1-3-MAN.tab model-level-2-FUC-BETA1-6-NAG.tab model-level-4-MAN-ALPHA1-3-BMA.tab model-level-5-MAN-ALPHA1-6-BMA.tab model-level-2-FUL-ALPHA1-3-NAG.tab model-level-4-MAN-ALPHA1-4-BMA.tab model-level-5-MAN-ALPHA1-6-MAN.tab model-level-2-FUL-ALPHA1-6-NAG.tab model-level-4-MAN-ALPHA1-6-BMA.tab model-level-5-NAG-BETA1-2-MAN.tab model-level-2-NAG-BETA1-4-NAG.tab model-level-4-MAN-ALPHA1-6-MAN.tab model-level-6-GAL-BETA1-4-NAG.tab model-level-3-BMA-BETA1-3-NAG.tab model-level-4-NAG-BETA1-4-BMA.tab model-level-6-MAN-ALPHA1-2-MAN.tab model-level-3-BMA-BETA1-4-NAG.tab model-level-5-BMA-BETA1-2-BMA.tab model-level-7-GLC-ALPHA1-3-MAN.tab model-level-3-MAN-ALPHA1-4-NAG.tab model-level-5-BMA-BETA1-6-MAN.tab model-level-4-BMA-BETA1-3-BMA.tab model-level-5-MAN-ALPHA1-2-MAN.tab '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-models' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-models' Making install in cho-acedrg make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-acedrg" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-acedrg" /usr/bin/install -c -m 644 BMA-acedrg.cif FUC-acedrg.cif MAN-acedrg.cif NAG-acedrg.cif SIA-acedrg.cif XYP-acedrg.cif '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data/cho-acedrg' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data/cho-acedrg' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data" /usr/bin/install -c -m 644 tutorial-modern.pdb rnasa-1.8-all_refmac1.mtz ligands.db '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/data' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/data' Making install in man make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1" /usr/bin/install -c -m 644 'coot.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot.1' /usr/bin/install -c -m 644 'coot-density-score-by-residue.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-density-score-by-residue.1' /usr/bin/install -c -m 644 'coot-compare-dictionaries.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-compare-dictionaries.1' /usr/bin/install -c -m 644 'coot-available-comp-id.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-available-comp-id.1' /usr/bin/install -c -m 644 'coot-bfactan.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-bfactan.1' /usr/bin/install -c -m 644 'coot-fix-nomenclature-errors.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-fix-nomenclature-errors.1' /usr/bin/install -c -m 644 'coot-make-shelx-restraints.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-make-shelx-restraints.1' /usr/bin/install -c -m 644 'coot-mini-rsr.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/coot-mini-rsr.1' /usr/bin/install -c -m 644 'lidia.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/lidia.1' /usr/bin/install -c -m 644 'findwaters.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/findwaters.1' /usr/bin/install -c -m 644 'findligand.man' '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/man/man1/findligand.1' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/man' Making install in rama-data make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/rama-data" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/rama-data" /usr/bin/install -c -m 644 rota500-arg.data rota500-asn.data rota500-asp.data rota500-cys.data rota500-gln.data rota500-glu.data rota500-his.data rota500-ile.data rota500-leu.data rota500-lys.data rota500-met.data rota500-phetyr.data rota500-pro.data rota500-ser.data rota500-thr.data rota500-trp.data rota500-val.data '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/rama-data' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rama-data' Making install in doc make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' make[2]: Nothing to be done for `install-exec-am'. make[2]: Nothing to be done for `install-data-am'. make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/doc' Making install in rcrane make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane" /usr/bin/install -c -m 644 CHANGELOG.txt buildPhosOxy.py installRCrane.py pseudoMolecule.py selectMapDialog.py LICENSE.txt calcCoords.py launch.py pseudoPredictor.py settings.py chain.py linearInterp.py puckerList.py smoothProb.py NOTICE.txt citationPopup.py logo.svg reviewSuitesGui.py stats.py README.txt coot_gui_adapter.py menu.py revisionNum.py strucCalc.py __init__.py coot_utils_adapter.py nextPhos.py rotData.py suite.py about.py nucleotide.py rotamerSeq.py thetaEtaPredictor.py bondLength.py guiUtils.py phenixRestraints.py rotamerize.py traceGui.py buildInitSugar.py icon.svg '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane' /usr/bin/install -c -m 644 preLaunchCheck.py safelog.py extendChain.py reportInputErrors.py '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane/data" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane/data" /usr/bin/install -c -m 644 data/bases.pdb data/phosAngleSmoothed.csv data/sugarDists.csv data/c2p.pdb data/phosDistSmoothed.csv data/sugarPhosSugarAngleSmoothed.csv data/c3p.pdb data/pseudoChiSmoothed.csv data/thetaEtaClusts.csv data/dihedData.csv data/smoothedPuckerDist.csv data/endingPDists.csv data/startingPDists.csv '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/lib/python2.7/site-packages/coot/rcrane/data' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/rcrane' Making install in pixmaps make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' Making install in icons make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[3]: Nothing to be done for `install-exec-am'. for icon in hicolor_apps_48x48_coot.png hicolor_apps_64x64_coot.png hicolor_apps_96x96_coot.png hicolor_apps_256x256_coot.png hicolor_apps_scalable_coot.svg; do \ THEME=` echo $icon | cut -d_ -f1`; \ CONTEXT=` echo $icon | cut -d_ -f2`; \ SIZE=` echo $icon | cut -d_ -f3`; \ ICONFILE=`echo $icon | cut -d_ -f4`; \ mkdir -p /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/icons/$THEME/$SIZE/$CONTEXT; \ /usr/bin/install -c -m 644 ./$icon /home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/icons/$THEME/$SIZE/$CONTEXT/$ICONFILE; \ done; make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps/icons' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[3]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[3]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps" /usr/bin/install -c -m 644 coot-0.8.9-pre.png add-alt-conf.png dna.svg probe-clash.svg add-alt-conf.svg edit-backbone.svg radacina_handcuffs-small.svg add-peptide-1.png edit-chi.png ramachandran.png add-peptide-1.svg edit-chi.svg refine-1.svg add-water.svg emsley.jpg refine.png anchor.svg env-distances.png regularize-1.svg aniso-atom.png env-distances.svg regularize.png aniso-atom.svg eugene.jpg renumber-residues.svg appointment-new.png flip-peptide.png reset-view-32.png atom-at-pointer.png flip-peptide.svg reset-view-32.svg atom-at-pointer.svg generic-display-objects.svg reset-view.png auto-fit-rotamer.png geom.svg reset-view.svg auto-fit-rotamer.svg ghosts.png residue-info.png '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 azerbaijan2.svg ghosts.svg residue-info.svg azerbaijan.svg gln-asn-b-factors.svg rigid-body.png calculate-ghosts.svg gln-asn-b-factorssvg.svg rigid-body.svg cell+symm.png glyco-structures.svg rotamers.png cell+symm.svg gnome-run.png rotamers.svg change-chain-id.svg go-to-atom.svg rtz.png rrz.png chiral.png go-to-ligand.svg rtz.svg rrz.svg chiral.svg gtk-connect-16.png scroll-wheel.svg connect-to-ccp4.svg gtk-font.png secondary-structure.svg connect-to-oca.svg gtk-open-16.png sequence-view.png connect-to-usf.svg gtk-open-24.png sequence-view.svg connect-to-world.svg gtk-open.png side-chain-180.png kevin.jpg side-chain-180.svg '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 kevin-orig.jpg smiles.png kleywegt.svg smiles.svg map.svg spin-view.png coot-favicon.png merge-molecules.svg spin-view.svg coot-icon.png mutate-auto-fit.svg stereo-view.svg coot-save.png mutate.svg stop.svg coot-save-symm.png panel-screenshot.png temperature.png crosshairs.png peptide-omega.png temperature.svg crosshairs.svg peptide-omega.svg torsion-general.svg delete.png phenixed.svg undo-1.png delete.svg pink-pointer.png undo-1.svg density-fit.svg pink-pointer.svg unknown-blob.png diff-map.png plane-distances.png unknown-blob.svg diff-map.svg plane-distances.svg water-diff-map.svg display-manager.png '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps' /usr/bin/install -c -m 644 pointer-distances.png water-drop.svg display-manager.svg pointer-distances.svg koppi-green-tick-64.png rygle-red-cross-64.png forest51690-dwcheckno-incomplete-64.png go-to-ligand.png go-to-atom.png azerbaijan.png add-water.png mutate.png mutate-auto-fit.png edit-backbone.png torsion-general.png anchor.png regularize-1.png refine-1.png stock-zoom-follow-window-12.svg stock-zoom-follow-window-12.png rama_all.png rama_gly.png rama_pro.png rama_non_gly_pro.png '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot/pixmaps' make[3]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre/pixmaps' make[1]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre' make[2]: Entering directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre' make[2]: Nothing to be done for `install-exec-am'. test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/appdata" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/appdata" /usr/bin/install -c -m 644 coot.appdata.xml '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/appdata' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/applications" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/applications" /usr/bin/install -c -m 644 coot.desktop '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/applications' test -z "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" || /bin/mkdir -p "/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot" /usr/bin/install -c -m 644 cootrc standard-residues.pdb colours.def mtrix-to-ncs-matrix.awk syminfo.lib '/home/paule/autobuild/Linux-ubuntu-server-pre-release-gtk2-python/share/coot' make[2]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre' make[1]: Leaving directory `/home/paule/autobuild/building/ubuntu-server_2018-01-02__T23_29_02/coot-0.8.9-pre'