This is script version 5.26 for Gtk2
Mon Aug 31 15:57:14 BST 2015
currently architecture is x86_64
systype: x86_64-ubuntu-14.04
update_libtool: 1
update_config_guess_sub: 1
patch
system has patch
m4
system has m4
g++
system has g++
libxext-dev
system has libxext-dev
libxmu-dev
system has libxmu-dev
libxt-dev
system has libxt-dev
libc6-dev
system has libc6-dev
libglu1-mesa-dev
system has libglu1-mesa-dev
mesa-common-dev
system has mesa-common-dev
libgtk2.0-dev
system has libgtk2.0-dev
libgnomecanvas2-dev
system has libgnomecanvas2-dev
AUTOBUILD_BUILD=/home/paule/autobuild/building
AUTOBUILD_INSTALLED=/home/paule/autobuild/Linux-ubuntu1404
AUTOBUILD_SOURCES=/home/paule/autobuild/building/sources
BALBES_ROOT=/home/paule/ccp4/ccp4-6.3.0/share/BALBES/Package
BASH=/bin/bash
BASHOPTS=cmdhist:complete_fullquote:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=([0]="1")
BASH_ARGV=([0]="build-it")
BASH_CMDS=()
BASH_LINENO=([0]="19" [1]="0")
BASH_SOURCE=([0]="build-it" [1]="autobuild")
BASH_VERSINFO=([0]="4" [1]="3" [2]="11" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
BASH_VERSION='4.3.11(1)-release'
BINARY_INSTALL_CMD=www-placement
BINSORT_SCR=/tmp/paule
CBIN=/home/paule/ccp4/ccp4-6.3.0/bin
CCP4=/home/paule/ccp4/ccp4-6.3.0
CCP4I_HELP=/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/help
CCP4I_TCLTK=/usr/bin
CCP4I_TOP=/home/paule/ccp4/ccp4-6.3.0/share/ccp4i
CCP4_BIN=/home/paule/ccp4/ccp4-6.3.0/bin
CCP4_BROWSER=firefox
CCP4_CRANK=1
CCP4_HELPDIR=/home/paule/ccp4/ccp4-6.3.0/help/
CCP4_LIB=/home/paule/ccp4/ccp4-6.3.0/lib
CCP4_MASTER=/home/paule/ccp4
CCP4_OPEN=UNKNOWN
CCP4_SCR=/tmp/paule
CDOC=/home/paule/ccp4/ccp4-6.3.0/doc
CETC=/home/paule/ccp4/ccp4-6.3.0/etc
CEXAM=/home/paule/ccp4/ccp4-6.3.0/examples
CHTML=/home/paule/ccp4/ccp4-6.3.0/html
CINCL=/home/paule/ccp4/ccp4-6.3.0/include
CLASSPATH=/home/paule/ccp4/ccp4-6.3.0/bin:
CLIB=/home/paule/ccp4/ccp4-6.3.0/lib
CLIBD=/home/paule/ccp4/ccp4-6.3.0/lib/data
CLIBD_MON=/home/paule/ccp4/ccp4-6.3.0/lib/data/monomers/
CLIBS=/home/paule/ccp4/ccp4-6.3.0/lib/libccp4
CPROG=/home/paule/ccp4/ccp4-6.3.0/src
CRANK=/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/crank
DBCCP4I_TOP=/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i
DIRSTACK=()
DISPLAY=localhost:10.0
DYLD_LIBRARY_PATH=/home/paule/ccp4/ccp4-6.3.0/lib
EDITOR=vi
ENABLE_GUILE_COOT=yes
ENABLE_PYTHON_COOT=yes
EUID=1000
GFORTRAN_UNBUFFERED_ALL=1
GFORTRAN_UNBUFFERED_PRECONNECTED=Y
GIT_PAGER=less
GROUP=paule
GROUPS=()
HARVESTHOME=/home/paule
HOME=/home/paule
HOST=ubuntu1404
HOSTNAME=ubuntu1404
HOSTTYPE=x86_64-linux
IFS=$' \t\n'
LANG=en_GB.UTF-8
LANGUAGE=en_GB:en
LD_LIBRARY_PATH=/home/paule/ccp4/ccp4-6.3.0/lib
LESS=semiR
LOGNAME=paule
LOGS=/home/paule/public_html/build-logs/Linux-ubuntu1404
MACHTYPE=x86_64
MAIL=/var/mail/paule
MANPATH=/home/paule/ccp4/ccp4-6.3.0/man:
MMCIFDIC=/home/paule/ccp4/ccp4-6.3.0/share/ccif/cif_mmdic.lib
MOLREPLIB=/home/paule/ccp4/ccp4-6.3.0/lib/data/monomers/
MOSFLM_EXEC=/home/paule/ccp4/ccp4-6.3.0/bin/ipmosflm
MOSFLM_WISH=/usr/bin/wish
NIGHTLY_DEST_DIR=/home/paule/public_html/software/binaries/nightlies/pre-release
OPTERR=1
OPTIND=1
OS=Linux
OSTYPE=linux
PATH=/home/paule/autobuild/Linux-ubuntu1404-pre-release-gtk2/bin:/home/paule/bin:/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin:/home/paule/ccp4/ccp4-6.3.0/bin:/home/paule/ccp4/ccp4-6.3.0/etc:/home/paule/bin.Linux:/home/paule/gqview/bin:/home/paule/gdb/bin:/home/paule/bin:/home/paule/tools/bin:/sbin:/usr/sbin:/home/paule/molprobity:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core//Test:/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2//Applications:/usr/local/bin:/usr/sbin:/usr/bsd:/sbin:/usr/bin:/bin::/etc:/usr/etc
PIPESTATUS=([0]="1")
PISA_CONF_FILE=/home/paule/ccp4/ccp4-6.3.0/share/pisa/pisa.cfg
PLOT_COMMAND='lp -s'
PPID=10624
PRINT_COMMAND='lp -s'
PS4='+ '
PUBLIC_FONT84=/home/paule/ccp4/ccp4-6.3.0/lib/data/ccp4/font84.dat
PWD=/home/paule/autobuild
PYTHONPATH=/home/paule/ccp4/ccp4-6.3.0/share/python:
RASMOLPATH=/home/paule/ccp4/ccp4-6.3.0/x-windows/RasMol
REMOTEHOST=garib-pc-1.lmb.internal
SHELL=/usr/bin/tcsh
SHELLOPTS=braceexpand:hashall:interactive-comments
SHLVL=2
SSH_CLIENT='10.21.64.57 34447 22'
SSH_CONNECTION='10.21.64.57 34447 10.91.192.166 22'
SSH_TTY=/dev/pts/4
STABLE_DEST_DIR=/home/paule/public_html/software/binaries/stable
TERM=xterm
UID=1000
USER=paule
VENDOR=unknown
VERSION=0.3.4.0
XAPPLRESDIR=/home/paule/app-defaults
XDG_RUNTIME_DIR=/run/user/1000
XDG_SESSION_ID=18
XIA2CORE_ROOT=/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2core/
XIA2_HOME=/home/paule/ccp4/ccp4-6.3.0/share/xia2
XIA2_ROOT=/home/paule/ccp4/ccp4-6.3.0/share/xia2/xia2/
XUSERFILESEARCHPATH=/home/paule/ccp4/ccp4-6.3.0/lib/X11/app-defaults/%N:/home/paule/app-defaults/%N
_=']'
arch=x86_64
architecture=x86_64
build_coot_prerelease=1
build_type=gtk2-python
ccp4_first_in_path=1
ccp4pathlist='/home/paule/ccp4/ccp4-6.3.0/etc /home/paule/ccp4/ccp4-6.3.0/bin /home/paule/ccp4/ccp4-6.3.0/share/ccp4i/bin /home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin'
dep=libgnomecanvas2-dev
dep_list=$'\n       patch\n       m4\n       g++\n       libxext-dev\n       libxmu-dev\n       libxt-dev\n       libc6-dev\n       libglu1-mesa-dev \n       mesa-common-dev\n       libgtk2.0-dev\n       libgnomecanvas2-dev'
dir=/home/paule/ccp4/ccp4-6.3.0/share/dbccp4i/bin
dist_name=ubuntu
dist_ver=14.04
do_nightlies=1
fallback_coot_version=coot-0.4
have_malloc=1
no_proxy=.corp.net.com
processor=GNU/Linux
proxy_host=myproxy.com
proxy_port=800
publish=transfer-to-web-server.sh
publish_logs=publish-logs.sh
run_tests=true
script_version=5.26
shared_lib_ext=so
shared_static_flag=--disable-shared
specs=/home/paule/autobuild/build-scripts/ubuntu1404-specials
systype=x86_64-ubuntu-14.04
update_config_guess_sub=1
update_libtool=1
use_proxy=
fixup_libcurl () 
{ 
    sed s,-L/usr/lib,, curl-config > curl-config.tmp;
    mv curl-config.tmp curl-config;
    sed s,-L/usr/lib,, lib/libcurl.la > lib/libcurl.la.tmp;
    mv lib/libcurl.la.tmp lib/libcurl.la
}
make_tar () 
{ 
    echo in make_tar args: $1 $2;
    echo in make_tar: in dir: $PWD;
    tar_dir=$1;
    tar_file_name=$2;
    cd $install_top_dir/..;
    if [ -e $tar_dir ]; then
        echo taring nightly... from $tar_dir to $tar_file_name;
        tar czf $tar_file_name $tar_dir;
        status=$?;
        if [ "$status" != 0 ]; then
            echo ERROR:: tar czf $tar_file_name $tar_dir failed.;
            echo ERROR:: while in directory $(pwd);
            echo ERROR:: tar failed > $tar_file_name.md5sum;
            rm $tar_file_name;
        else
            md5sum $tar_file_name > $tar_file_name.md5sum;
            /bin/ls -l $tar_file_name >> $tar_file_name.md5sum;
            echo done tar successfully.;
        fi;
    else
        echo ERROR:: tar target directory $tar_dir does not exist.;
    fi
}
mkdir_maybe () 
{ 
    dir=$1;
    if [ ! -e "$dir" ]; then
        mkdir $dir;
    fi
}
my_exit () 
{ 
    exit_arg=$1;
    shift;
    extra_args=$*;
    echo fail-build $extra_args > $LOGS/$build_type-build-status;
    if [ -e $LOGS/$build_type-test-status ]; then
        rm $LOGS/$build_type-test-status;
    fi;
    exit $exit_arg
}
post_install_slim () 
{ 
    echo we are slimming directory $1;
    fat_dir="$1";
    cleaned_dir="$2";
    clear_type="$3";
    echo fat_dir is $fat_dir;
    echo clear_type is $clear_type;
    echo cleaned_dir is $cleaned_dir;
    mkdir_maybe $cleaned_dir;
    mkdir_maybe $cleaned_dir/bin;
    mkdir_maybe $cleaned_dir/lib;
    if [ "$ENABLE_PYTHON_COOT" = yes ]; then
        mkdir_maybe $cleaned_dir/include;
        mkdir_maybe $cleaned_dir/include/$python_version;
    fi;
    lib_sos=`cd $fat_dir && ls -1 lib/lib*.so*`;
    lib_as=`cd $fat_dir && ls -1 lib/lib*.a`;
    if [ "$clear_type" = "clear-dynamic" ]; then
        keep_lib_archs="$lib_as";
    fi;
    if [ "$clear_type" = "clear-static" ]; then
        keep_lib_archs="$lib_sos";
    fi;
    file_list="etc info man share libexec bin/coot libexec/coot-bin         bin/findwaters bin/findwaters-real bin/findligand bin/findligand-real 	bin/guile bin/density-score-by-residue bin/density-score-by-residue-real         bin/curl $keep_lib_archs";
    if [ "$ENABLE_PYTHON_COOT" = yes ]; then
        file_list="$file_list html                     lib/$python_version include/$python_version";
    fi;
    echo rsyncing...;
    for file in $file_list;
    do
        dn=$(dirname $file);
        if [ -e $fat_dir/$file ]; then
            rsync -axr $fat_dir/$file $cleaned_dir/$dn;
        else
            echo $fat_dir/$file does not exist;
        fi;
    done;
    echo done rsyncing.
}
setup_ccp4 () 
{ 
    if test "$OS" = Linux; then
        setup_file=/y/programs/xtal/ccp4-6.0.2/ccp4-6.0.2/include/ccp4.setup-sh;
        if test -e $setup_file; then
            . $setup_file;
        else
            if [ "$systype" = x86_64-centos-6 ]; then
                setup_file=/home/emsley/ccp4/setup-scripts/sh/ccp4.setup;
            else
                if [ "$systype" = x86_64-centos-5 ]; then
                    setup_file=/home/emsley/ccp4/ccp4-6.2.0/include/ccp4.setup-sh;
                else
                    setup_file=setup-ccp4;
                fi;
            fi;
            if test -e $setup_file; then
                echo evaluating $setup_file;
                . $setup_file;
            else
                echo WARNING:: ccp4 setup file $setup_file does not exist.;
            fi;
        fi;
    fi;
    if test "$OS" = Darwin; then
        . /usr/local/ccp4-6.0.2/bin/ccp4.setup-sh;
    fi
}
ssh_copy () 
{ 
    if [ "$do_ssh_copy" = true ]; then
        dir=public_html/software/binaries/nightlies/pre-release/;
        echo ssh_copy copying over files using $HOME/bin/sput-with-dir $bin_tar_file $dir;
        $HOME/bin/sput-with-dir $bin_tar_file $dir;
        if [ -e $bin_tar_file.md5sum ]; then
            $HOME/bin/sput-with-dir $bin_tar_file.md5sum dir;
        fi;
    else
        echo Not ssh copying file to York, $domainname;
    fi
}
ssh_copy_logs_to_biop () 
{ 
    local_log_dir=$1;
    target_dir=$2;
    if [ "$do_ssh_biop_copy" = true ]; then
        echo copying over log files to Biop...;
        target_dir=$2;
        $HOME/bin/sput-with-dir $local_log_dir $target_dir;
    else
        echo Not ssh copying log files to biop;
    fi
}
ssh_copy_to_biop () 
{ 
    bin_tar_file=$1;
    if [ "$do_ssh_biop_copy" = true ]; then
        target_dir=public_html/coot/software/binaries/pre-releases/;
        echo copying over files to Biop: $HOME/bin/sput-with-dir $bin_tar_file $target_dir;
        $HOME/bin/sput-with-dir $bin_tar_file $target_dir;
        if [ -e $bin_tar_file.md5sum ]; then
            echo and also: $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir;
            $HOME/bin/sput-with-dir $bin_tar_file.md5sum $target_dir;
        fi;
    else
        echo Not ssh copying file to biop;
    fi
}
test_coot () 
{ 
    echo testing with greg;
    echo testing with greg 1>&2;
    echo currently we are here:;
    pwd;
    date;
    if [ "$1" != "" ]; then
        coot_binary=$1;
    else
        coot_binary=$install_top_dir/libexec/coot-bin;
    fi;
    if test "$run_tests" = true; then
        COOT_PYTHON_DIR=$install_top_dir/share/coot/python;
        PYTHONPATH=$COOT_PYTHON_DIR;
        PYTHONHOME=$install_top_dir;
        export COOT_PYTHON_DIR;
        export PYTHONPATH;
        export PYTHONHOME;
        if [ ! -d greg-tests ]; then
            echo greg-tests dir missing in this directory:;
            pwd;
            return 1;
        fi;
        setup_ccp4;
        cat  > command-line-greg.scm <<EOF
   (use-modules (ice-9 greg))
         (set! greg-tools (list "greg-tests"))
         (set! greg-debug #t)
         (set! greg-verbose 5)
         (let ((r (greg-test-run)))
            (if r
	        (coot-real-exit 0)
	        (coot-real-exit 1)))
EOF

        echo $install_top_dir/bin/coot --no-graphics --script command-line-greg.scm;
        $install_top_dir/bin/coot --no-graphics --script command-line-greg.scm;
        status=$?;
        if [ $status = 0 ]; then
            echo test_coot: coot test passed;
            return 0;
        else
            echo test_coot: coot test failed;
            return 1;
        fi;
    else
        echo run_tests is not true, not testing.;
        return 1;
    fi
}
test_coot_python () 
{ 
    echo testing with python unittest;
    echo testing with python unittest 1>&2;
    echo currently we are here:;
    pwd;
    if test "$run_tests" = true; then
        COOT_PYTHON_DIR=$install_top_dir/share/coot/python;
        PYTHONPATH=$COOT_PYTHON_DIR;
        PYTHONHOME=$install_top_dir;
        export COOT_PYTHON_DIR;
        export PYTHONPATH;
        export PYTHONHOME;
        echo $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py;
        $install_top_dir/bin/coot --no-graphics --script python-tests/coot_unittest.py;
        status=$?;
        if [ $status = 0 ]; then
            echo test_coot_python: coot test passed;
            return 0;
        else
            echo test_coot_python: coot test failed;
            return 1;
        fi;
    else
        return 1;
    fi
}
INFO:: MACHTYPE is x86_64
INFO:: systype is x86_64-ubuntu-14.04
g++ (Ubuntu 4.8.2-19ubuntu1) 4.8.2
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

new version path
need_guile_unused_values_patch is true
Testing version of make
GNU Make 3.81
Copyright (C) 2006  Free Software Foundation, Inc.
This is free software; see the source for copying conditions.
There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A
PARTICULAR PURPOSE.

This program built for x86_64-pc-linux-gnu
using 4 processors in compilation
MAKE set to make -j4
testing for patch
testing awk type (prefer GNU awk)
GNU Awk 4.0.1
Copyright (C) 1989, 1991-2012 Free Software Foundation.

This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 3 of the License, or
(at your option) any later version.

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with this program. If not, see http://www.gnu.org/licenses/.
good, you have an awk from GNU.
Date: 2015-08-31__T14_57_15
checking wget
which wget
/usr/bin/wget
pre_release_files_html /home/paule/autobuild/building/sources/index-pre-release.html
coot_version_tmp : :
clever coot_version extraction failed, using default.
INFO:: building pre-release and coot_version_pre is
trying to build pre-release coot, but failed to find pre-release version
make a stable release then
examining release server files /home/paule/autobuild/building/sources/index.html
coot_version coot-0.8.2
INFO:: binary tar destination dir: BINARY_TAR_DEST_DIR is /home/paule/public_html/software/binaries/stable
coot_version_pre is
build_coot_prerelease:
release_server_dir http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/releases
coot_version coot-0.8.2
testing for install_top_dir: /home/paule/autobuild/Linux-ubuntu1404-gtk2-python
/home/paule/autobuild/Linux-ubuntu1404-gtk2-python does not exist
making directory /home/paule/autobuild/Linux-ubuntu1404-gtk2-python
done testing for /home/paule/autobuild/Linux-ubuntu1404-gtk2-python
making /home/paule/autobuild/Linux-ubuntu1404-gtk2-python/lib
ccp4_system_type linux
fftw should be built
curl should be built
system does not have libidn
installation does not have libidn, libcurl should be built also
pkg-config is /usr/bin/pkg-config
pkg-config is new enough 0.26
COOT_CCP4_PACKAGES 
PKG_CONFIG_PATH is now /home/paule/autobuild/Linux-ubuntu1404-gtk2-python/lib/pkgconfig
system/installation has freetype2
glib is not up to date, rebuild glib - maybe.
:::::::: gtk version is at least 2.10
:::::::: gtk version is 2.24.23
gtk is new enough for guile-gtk
freeglut should be built
libtool should be built
gmp should be built
readline needs to be built
atempting to run installed guile-config (this may fail, that's OK).
guile should be built
guile-gui needs to be installed
guile-lib needs to be installed
testing for greg using
guile greg status 127
greg should be built
python should be built
gsl should be built
gtkglext should be built
installation does not have guile-gtk
guile-gtk.h not found, guile-gtk should be built
2.30.3
goocanvas: recent enough gtk+ version
goocanvas: recent enough cairo version
goocanvas: goocanvas_args set to --with-goocanvas-prefix=/home/paule/autobuild/Linux-ubuntu1404-gtk2-python
installation has no mmdb, build mmdb.
SSM not found - needs to be built
mmdb needs to be built, so clipper needs building.
BUILDING: libccp4
BUILDING mmdb:
wget -N -P /home/paule/autobuild/building/sources http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/dependencies/mmdb2-2.0.1.tar.gz
BUILDING SSM:
BUILDING fftw:
BUILDING clipper:
BUILDING freeglut:
BUILDING gtkglext:
status from gtkglext build was 0
BUILDING goocanvas
BUILDING Python 2.7.8:
wget -N -P /home/paule/autobuild/building/sources http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tgz
got Python-2.7.8.tgz
post linking python to python2.7
removing old python
linking new...
done python linking.
BUILDING pygobject:
INFO:: pkg-config is new enough to build pygobject
BUILDING pygtk:
BUILDING gmp:
BUILDING libtool:
BUILDING readline:
BUILDING guile:
building greg:
BUILDING guile-gtk:
GTK minor version is good enough, 24
BUILDING guile-gui:
BUILDING guile-lib:
BUILDING libidn:
BUILDING curl:
BUILDING gsl:
BUILDING coot: version coot-0.8.2, guile=yes, python=yes
using coot version coot-0.8.2
15404 -rw-rw-r-- 1 paule paule 15772937 Aug 28 18:34 /home/paule/autobuild/building/sources/coot-0.8.2.tar.gz
good /home/paule/autobuild/building/sources/coot-0.8.2.tar.gz exists
Mon Aug 31 16:07:05 BST 2015
/home/paule/autobuild/building/ubuntu1404_2015-08-31__T14_57_15
BUILDING coot: version coot-0.8.2, python=yes
coot build was good.
done coot build.
INSTALLING refmac monomer library...
GETTING reference structures tar...
INSTALLING reference structures...
we are slimming directory /home/paule/autobuild/Linux-ubuntu1404-gtk2-python
fat_dir is /home/paule/autobuild/Linux-ubuntu1404-gtk2-python
clear_type is clear-static
cleaned_dir is /home/paule/autobuild/coot-Linux-x86_64-ubuntu-14.04-gtk2-python
rsyncing...
/home/paule/autobuild/Linux-ubuntu1404-gtk2-python/etc does not exist
/home/paule/autobuild/Linux-ubuntu1404-gtk2-python/html does not exist
done rsyncing.
running tests:
========================
    first coot test passed
========----============
in make_tar args: coot-Linux-x86_64-ubuntu-14.04-gtk2-python /home/paule/public_html/software/binaries/stable/holding/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz
in make_tar: in dir: /home/paule/autobuild/building/ubuntu1404_2015-08-31__T14_57_15/coot-0.8.2
taring nightly... from coot-Linux-x86_64-ubuntu-14.04-gtk2-python to /home/paule/public_html/software/binaries/stable/holding/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz
done tar successfully.
cding into coot-Linux-x86_64-ubuntu-14.04-gtk2-python from /home/paule/autobuild/building/ubuntu1404_2015-08-31__T14_57_15/test-tar
ln -s ../../coot-0.8.2/greg-tests .
second coot test...
========================
second coot test passed
========================
INFO:: in /home/paule/autobuild/building/ubuntu1404_2015-08-31__T14_57_15/coot-0.8.2 and about to copy over README and RELEASE-NOTES to /home/paule/public_html/software/binaries/stable
about to publish files:
transfer-to-web-server.sh /home/paule/public_html/software/binaries/stable/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file /home/paule/public_html/software/binaries/stable/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz
server check path
transfer-to-web-server.sh /home/paule/public_html/software/binaries/stable/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz.md5sum
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file /home/paule/public_html/software/binaries/stable/coot-0.8.2-binary-Linux-x86_64-ubuntu-14.04-python-gtk2.tar.gz.md5sum
server check path
transfer-to-web-server.sh /home/paule/public_html/software/binaries/stable/type-binary-Linux-x86_64-ubuntu-14.04-python-gtk2-latest.txt
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file /home/paule/public_html/software/binaries/stable/type-binary-Linux-x86_64-ubuntu-14.04-python-gtk2-latest.txt
server check path
transfer-to-web-server.sh --no-server-check ChangeLog
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file ChangeLog
transfer-to-web-server.sh --no-server-check coot-README
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file coot-README
transfer-to-web-server.sh --no-server-check RELEASE-NOTES
transfer-to-web-server.sh: debug dest_dir coot/binaries/pre-releases
transfer-to-web-server.sh: debug file RELEASE-NOTES
done copy of README and RELEASE-NOTES
/home/paule/bin/transfer-to-web-server.sh
%%%%run-command: transfer-to-web-server.sh /home/paule/public_html/build-logs/Linux-ubuntu1404/gtk2-python-build.log coot/build-logs/Linux-ubuntu1404
transfer-to-web-server.sh: debug dest_dir coot/build-logs/Linux-ubuntu1404
transfer-to-web-server.sh: debug file /home/paule/public_html/build-logs/Linux-ubuntu1404/gtk2-python-build.log
server check path