Making all in auxil
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil'
Making all in catcheck
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/catcheck'
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Making all in rama
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/rama'
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Making all in sec-str
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/sec-str'
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Making all in strand-analysis
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/strand-analysis'
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make[2]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/strand-analysis'
Making all in vectors
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/vectors'
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make[2]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil/vectors'
make[2]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil'
make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/auxil'
Making all in scheme
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/scheme'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/scheme'
Making all in python
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/python'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/python'
Making all in pdb-templates
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/pdb-templates'
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Making all in macros
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/macros'
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Making all in compat
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/compat'
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Making all in utils
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/utils'
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Making all in protein_db
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/protein_db'
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Making all in mini-mol
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/mini-mol'
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Making all in geometry
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/geometry'
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Making all in coot-utils
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils'
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Making all in surface
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/surface'
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Making all in coot-surface
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/coot-surface'
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Making all in lidia-core
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/lidia-core'
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Making all in coords
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/coords'
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Making all in angles
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/angles'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/angles'
Making all in skeleton
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/skeleton'
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Making all in ccp4mg-utils
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/ccp4mg-utils'
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Making all in density-contour
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/density-contour'
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Making all in db-main
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/db-main'
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Making all in ideal
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/ideal'
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Making all in ligand
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/ligand'
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Making all in high-res
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/high-res'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/high-res'
Making all in build
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/build'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/build'
Making all in greg-tests
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/greg-tests'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/greg-tests'
Making all in python-tests
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/python-tests'
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Making all in analysis
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/analysis'
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Making all in tw
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/tw'
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Making all in libgtkgraph
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/libgtkgraph'
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Making all in lbg
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/lbg'
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Making all in cootaneer
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/cootaneer'
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Making all in cootilus
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/cootilus'
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Making all in goograph
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/goograph'
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make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/goograph'
Making all in src
make[1]: Entering directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/src'
/bin/bash ../libtool --tag=CXX   --mode=link g++ -DPKGDATADIR='"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share/coot"' -DPACKAGE_LOCALE_DIR='"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share/coot/locale"' -DDATADIR='"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share"' -DCOOT_SYS_BUILD_TYPE='"Linux-x86_64-ubuntu-12.04.3-python-gtk2"' -DCOOT_BUILD_INFO_STRING='""' -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK  -DHAVE_GSL -fopenmp -g -O -Wreturn-type   -o coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp ../lbg/libcoot-lidia.la ../ligand/libcoot-ligand.la ../lidia-core/libcoot-lidia-core.la ../goograph/libcoot-goograph.la ../libgtkgraph/libcoot-gtkgraph.la ../density-contour/libcoot-isosurface.la ../build/libcoot-cabuild.la ../skeleton/libcoot-skeleton.la ../angles/libcoot-AngleInfo.la ../db-main/libcoot-db-main.la ../high-res/libcoot-high-res.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-surface/libcoot-surface.la ../surface/libccp4mg-surface.la ../ccp4mg-utils/libccp4mg-utils.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-map-utils.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../analysis/libcoot-analysis.la ../protein_db/libcoot-protein-db.la ../cootilus/libcootilus.la ../cootaneer/libcootaneer.la ../compat/libcoot-compat.la  		 /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libguilegtk-2.0.la -P -pthread -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lguile -lltdl -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lgmp -lcrypt -lm -lltdl -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lclipper-ccp4 -lclipper-cif -lclipper-phs -lclipper-contrib -lclipper-minimol -lclipper-cns -lclipper-mmdb -lclipper-core -lccp4c -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python -lmmdb -lm -lrfftw -lfftw -lz -lm -lpthread -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lssm -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python -lmmdb -lm -lpthread -ldl -lutil -lm -lpython2.7 -Xlinker -export-dynamic -ldl -lutil   -Wl,--export-dynamic -pthread -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lX11 -lgmodule-2.0 -lrt -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0   -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lglut -L/usr/X11R6/lib   -lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0   -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lgsl -lgslcblas -lm  -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lcurl  "-L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -lForceFieldHelpers -lDescriptors -lForceField -lSubstructMatch -lOptimizer -lDistGeomHelpers -lDistGeometry -lAlignment -lEigenSolvers -lDepictor -lMolChemicalFeatures -lFileParsers  -lRDGeometryLib -lGraphMol -lSmilesParse -lDataStructs -lRDGeneral -lboost_python -lpython2.7" /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgoocanvas.la -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgobject-2.0 -lglib-2.0   
libtool: link: g++ -DPKGDATADIR=\"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share/coot\" -DPACKAGE_LOCALE_DIR=\"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share/coot/locale\" -DDATADIR=\"/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/share\" -DCOOT_SYS_BUILD_TYPE=\"Linux-x86_64-ubuntu-12.04.3-python-gtk2\" -DCOOT_BUILD_INFO_STRING=\"\" -DUSE_LIBCURL -DHAVE_SYS_STDTYPES_H=0 -DUSE_GUILE -DUSE_GUILE_GTK -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include -P -pthread -DUSE_PYTHON -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include/python2.7 -I/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/include/python2.7 -DUSE_PYGTK -DHAVE_GSL -fopenmp -g -O -Wreturn-type -o .libs/coot-real main.o svn-revision.o c-inner-main.o c-interface-analysis.o c-interface-build.o c-interface-build-gui.o c-interface-database.o c-interface-gui.o c-interface-gtk2.o c-interface-info.o c-interface-kk.o c-interface-ligands.o c-interface-ligands-gui.o c-interface-maps.o c-interface-mmdb.o c-interface-mogul.o c-interface-mogul-scripting.o c-interface-mutate.o c-interface-ncs.o c-interface-network.o c-interface-nucleotides.o c-interface-python.o c-interface-pisa.o c-interface-pisa-gui.o c-interface-preferences.o c-interface-refine.o c-interface-residues.o c-interface-scm.o c-interface-sequence.o c-interface-sfs.o c-interface-superpose.o c-interface-validate.o c-interface-view.o c-interface-widgets.o c-interface-waters.o c-interface-waters-gui.o c-interface.o c-interface-test.o callbacks.o cmtz-interface.o command-line.o coot-colour.o coot-align.o coot-nomenclature.o coot-glue.o coot-glue-gtk2.o coot-glue-gtk2-python.o coot-hydrogens.o coot_pythonmodule.o coot_wrap_guile_gtk2.o drag-and-drop.o geometry-graphs.o get-residue.o flev.o generic-objects.o globjects.o graphics-info.o graphics-info-defines.o graphics-info-graphs.o graphics-info-gui.o graphics-info-modelling.o graphics-info-navigation.o graphics-info-navigation-gtk1.o graphics-info-navigation-gtk2.o graphics-info-preferences.o graphics-info-network.o graphics-info-mutate.o graphics-info-lsq.o graphics-info-pick.o graphics-info-refmac.o graphics-info-render.o graphics-info-residues.o graphics-info-scripting.o graphics-info-state.o graphics-info-superpose.o graphics-ligand-view.o gl-matrix.o gtk-manual.o gtk-widget-conversion-utils.o gtk2-interface.o interface.o lbg-callbacks-outer.o lbg-interface.o molecule-class-info.o molecule-class-info-maps.o molecule-class-info-maps-2.o molecule-class-info-kdc.o molecule-class-info-dots.o molecule-class-info-other.o molecule-class-info-build.o molecule-class-info-mutate.o molecule-class-info-residues.o molecule-class-info-refine.o molecule-class-info-kk.o molecule-class-info-surface.o molecule-class-info-ncs.o molecule-class-info-widget-work.o nsv.o pick.o probe-clash-score.o protein_db-interface.o read-phs.o read-cif.o rama_mousey.o rama_plot.o restraints-editor.o sdf-interface.o support.o support-gtk2-extras.o testing.o testing-2.o trackball.o sequence-view.o seq-view-interface.o user-mods.o xmap-utils.o coot_wrap_python_gtk2.o -fopenmp -P -pthread -Wl,-export-dynamic -Wl,--export-dynamic -pthread  ../lbg/.libs/libcoot-lidia.so -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib -L/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python ../ligand/.libs/libcoot-ligand.so ../lidia-core/.libs/libcoot-lidia-core.so ../goograph/.libs/libcoot-goograph.so ../libgtkgraph/.libs/libcoot-gtkgraph.so ../density-contour/.libs/libcoot-isosurface.so ../build/.libs/libcoot-cabuild.so ../skeleton/.libs/libcoot-skeleton.so /home/paule/autobuild/b-e-l/coot-0.8-pre/angles/.libs/libcoot-AngleInfo.so ../angles/.libs/libcoot-AngleInfo.so ../db-main/.libs/libcoot-db-main.so ../high-res/.libs/libcoot-high-res.so /home/paule/autobuild/b-e-l/coot-0.8-pre/ligand/.libs/libcoot-ligand.so /home/paule/autobuild/b-e-l/coot-0.8-pre/ideal/.libs/libcoot-ideal.so /home/paule/autobuild/b-e-l/coot-0.8-pre/db-main/.libs/libcoot-db-main.so /home/paule/autobuild/b-e-l/coot-0.8-pre/ccp4mg-utils/.libs/libccp4mg-utils.so ../ideal/.libs/libcoot-ideal.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils/.libs/libcoot-map-heavy.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coords/.libs/libcoot-coords.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils/.libs/libcoot-shelx.so /home/paule/autobuild/b-e-l/coot-0.8-pre/lidia-core/.libs/libcoot-lidia-core.so ../coot-surface/.libs/libcoot-surface.so -L/usr/X11R6/lib /home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so ../surface/.libs/libccp4mg-surface.so ../ccp4mg-utils/.libs/libccp4mg-utils.so -lpng ../coot-utils/.libs/libcoot-map-heavy.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-map-utils.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so ../utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so ../analysis/.libs/libcoot-analysis.so /home/paule/autobuild/b-e-l/coot-0.8-pre/coot-utils/.libs/libcoot-coord-utils.so /home/paule/autobuild/b-e-l/coot-0.8-pre/geometry/.libs/libcoot-geometry.so /home/paule/autobuild/b-e-l/coot-0.8-pre/mini-mol/.libs/libcoot-mini-mol.so /home/paule/autobuild/b-e-l/coot-0.8-pre/utils/.libs/libcoot-utils.so ../protein_db/.libs/libcoot-protein-db.so ../cootilus/.libs/libcootilus.so ../cootaneer/.libs/libcootaneer.so ../compat/.libs/libcoot-compat.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libguilegtk-2.0.so -lgthread-2.0 /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libguile.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgmp.so -lcrypt /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libltdl.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-ccp4.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-cif.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-phs.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-contrib.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-minimol.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-cns.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-mmdb.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libclipper-core.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libccp4c.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/librfftw.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libfftw.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libssm.a /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libmmdb.so -lpthread -ldl -lutil /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgtkglext-x11-1.0.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgdkglext-x11-1.0.so -lXmu -lXt -lSM -lICE -lpangox-1.0 -lgmodule-2.0 /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libglut.so -lGL -lGLU -lXext -lX11 -lgnomecanvas-2 /usr/lib/x86_64-linux-gnu/libart_lgpl_2.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgsl.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgslcblas.so -lm /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libcurl.so /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libidn.so -lz -lrt -lForceFieldHelpers -lDescriptors -lForceField -lSubstructMatch -lOptimizer -lDistGeomHelpers -lDistGeometry -lAlignment -lEigenSolvers -lDepictor -lMolChemicalFeatures -lFileParsers -lRDGeometryLib -lGraphMol -lSmilesParse -lDataStructs -lRDGeneral -lboost_python -lpython2.7 /home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib/libgoocanvas.so -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 /usr/lib/x86_64-linux-gnu/libcairo.so -lpango-1.0 /usr/lib/x86_64-linux-gnu/libfreetype.so -lfontconfig -lgobject-2.0 -lglib-2.0 -pthread -Wl,-rpath -Wl,/home/paule/autobuild/coot-Linux-x86_64-ubuntu-12.04.3-enhanced-ligand-pre-release-gtk2-python/lib
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_parallel_start'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_critical_name_end'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_loop_dynamic_start'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_critical_name_start'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_loop_end_nowait'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_loop_dynamic_next'
/home/paule/autobuild/b-e-l/coot-0.8-pre/surface/.libs/libccp4mg-surface.so: undefined reference to `GOMP_parallel_end'
collect2: ld returned 1 exit status
make[1]: *** [coot-real] Error 1
make[1]: Leaving directory `/home/paule/autobuild/b-e-l/coot-0.8-pre/src'
make: *** [all-recursive] Error 1