ProSHADE
0.6.5 (NOV 2018)
Protein Shape Descriptors and Symmetry Detection
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Here is a list of all documented class members with links to the class documentation for each member:
- a -
aaErrorTolerance :
ProSHADE::ProSHADE_settings
alignDensities() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
alpha :
ProSHADE::ProSHADE_settings
appendStructure() :
ProSHADE::ProSHADE_settings
axisOrder :
ProSHADE::ProSHADE_settings
- b -
bandwidth :
ProSHADE::ProSHADE_settings
bFactorChange :
ProSHADE::ProSHADE_settings
bFactorValue :
ProSHADE::ProSHADE_settings
- c -
checkPeakExistence() :
ProSHADE_internal::ProSHADE_comparePairwise
clearMapData :
ProSHADE::ProSHADE_settings
clearMapFile :
ProSHADE::ProSHADE_settings
cnSymm :
ProSHADE_internal::ProSHADE_symmetry
cnSymmClear :
ProSHADE_internal::ProSHADE_symmetry
compareAgainstDatabase() :
ProSHADE_internal::ProSHADE_distances
compareFragAgainstDatabase() :
ProSHADE_internal::ProSHADE_distances
- d -
databaseMaxVolume :
ProSHADE::ProSHADE_settings
databaseMinVolume :
ProSHADE::ProSHADE_settings
databaseName :
ProSHADE::ProSHADE_settings
dbDistOverlay :
ProSHADE::ProSHADE_settings
dealWithHalfMaps() :
ProSHADE_internal::ProSHADE_mapFeatures
deleteModels :
ProSHADE::ProSHADE_settings
dnSymm :
ProSHADE_internal::ProSHADE_symmetry
dnSymmClear :
ProSHADE_internal::ProSHADE_symmetry
- e -
energyLevelDist :
ProSHADE::ProSHADE_settings
enLevelsThreshold :
ProSHADE::ProSHADE_settings
extraSpace :
ProSHADE::ProSHADE_settings
- f -
findCnSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
findCnSymmetryClear() :
ProSHADE_internal::ProSHADE_comparePairwise
findDnSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
findDnSymmetryClear() :
ProSHADE_internal::ProSHADE_comparePairwise
findIcosSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
findMapIslands() :
ProSHADE_internal::ProSHADE_data
findOctaSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
findTetrSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
firstLineCOM :
ProSHADE::ProSHADE_settings
fragmentMap() :
ProSHADE_internal::ProSHADE_data
,
ProSHADE_internal::ProSHADE_mapFeatures
freeInvMap() :
ProSHADE_internal::ProSHADE_comparePairwise
fullRotFnDist :
ProSHADE::ProSHADE_settings
- g -
generateIcosAxes() :
ProSHADE_internal::ProSHADE_symmetry
generateIcosElements() :
ProSHADE_internal::ProSHADE_symmetry
generateOctaAxes() :
ProSHADE_internal::ProSHADE_symmetry
generateOctaElements() :
ProSHADE_internal::ProSHADE_symmetry
generateTetrAxes() :
ProSHADE_internal::ProSHADE_symmetry
generateTetrElements() :
ProSHADE_internal::ProSHADE_symmetry
generateWignerMatrices() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
,
ProSHADE_internal::ProSHADE_comparePairwise
getClearCyclicSymmetries() :
ProSHADE::ProSHADE
getClearDihedralSymmetries() :
ProSHADE::ProSHADE
getCOMandDist() :
ProSHADE_internal::ProSHADE_data
getCommandLineParams() :
ProSHADE::ProSHADE_settings
getCrossCorrDists() :
ProSHADE::ProSHADE
getCSymmetries() :
ProSHADE_internal::ProSHADE_symmetry
getCyclicSymmetries() :
ProSHADE::ProSHADE
getCyclicSymmetriesPy() :
ProSHADE::ProSHADE
getDensityMapFromMAP() :
ProSHADE_internal::ProSHADE_data
getDensityMapFromMAPFeatures() :
ProSHADE_internal::ProSHADE_data
getDensityMapFromMAPRebox() :
ProSHADE_internal::ProSHADE_data
getDensityMapFromPDB() :
ProSHADE_internal::ProSHADE_data
getDihedralSymmetries() :
ProSHADE::ProSHADE
getDihedralSymmetriesPy() :
ProSHADE::ProSHADE
getDSymmetries() :
ProSHADE_internal::ProSHADE_symmetry
getEnergyLevelsDistance() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
getEnergyLevelsDistances() :
ProSHADE_internal::ProSHADE_distances
getEulerAngles() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
,
ProSHADE_internal::ProSHADE_comparePairwise
getFragEnergyLevelsDistances() :
ProSHADE_internal::ProSHADE_distances
getFragFullRotationDistances() :
ProSHADE_internal::ProSHADE_distances
getFragmentsList() :
ProSHADE_internal::ProSHADE_mapFeatures
getFragTraceSigmaDistances() :
ProSHADE_internal::ProSHADE_distances
getFullRotationDistances() :
ProSHADE_internal::ProSHADE_distances
getIcosahedralSymmetries() :
ProSHADE::ProSHADE
getIcosahedralSymmetriesPy() :
ProSHADE::ProSHADE
getMapFragments() :
ProSHADE::ProSHADE
getOctahedralSymmetries() :
ProSHADE::ProSHADE
getOctahedralSymmetriesPy() :
ProSHADE::ProSHADE
getPeakThreshold() :
ProSHADE_internal::ProSHADE_comparePairwise
getProSHADEVersion() :
ProSHADE::ProSHADE
getRecommendedSymmetry() :
ProSHADE::ProSHADE
getRecommendedSymmetryElementsPy() :
ProSHADE::ProSHADE
getRotCoeffDistance() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
,
ProSHADE_internal::ProSHADE_comparePairwise
getRotFnPeaks() :
ProSHADE_internal::ProSHADE_symmetry
getRotFunctionDists() :
ProSHADE::ProSHADE
getSO3InverseMap() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
,
ProSHADE_internal::ProSHADE_comparePairwise
getSO3Peaks() :
ProSHADE_internal::ProSHADE_comparePairwise
getSpecificSymmetryElements() :
ProSHADE::ProSHADE
getSpecificSymmetryElementsPy() :
ProSHADE::ProSHADE
getSphericalHarmonicsCoeffs() :
ProSHADE_internal::ProSHADE_data
getTetrahedralSymmetries() :
ProSHADE::ProSHADE
getTetrahedralSymmetriesPy() :
ProSHADE::ProSHADE
getTraceSigmaDistances() :
ProSHADE_internal::ProSHADE_distances
getTraceSigmaDists() :
ProSHADE::ProSHADE
getTranslationFunctionMap() :
ProSHADE_internal::ProSHADE_comparePairwise
getTrSigmaDistance() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
glIntegOrder :
ProSHADE::ProSHADE_settings
- h -
htmlReport :
ProSHADE::ProSHADE_settings
htmlReportLine :
ProSHADE::ProSHADE_settings
htmlReportLineProgress :
ProSHADE::ProSHADE_settings
- i -
icosAxes :
ProSHADE_internal::ProSHADE_symmetry
ignoreLs :
ProSHADE::ProSHADE_settings
inputStructureDataType :
ProSHADE_internal::ProSHADE_symmetry
- k -
keepPhaseInMap() :
ProSHADE_internal::ProSHADE_data
- m -
manualShells :
ProSHADE::ProSHADE_settings
mapFragBoxFraction :
ProSHADE::ProSHADE_settings
mapFragBoxSize :
ProSHADE::ProSHADE_settings
mapFragName :
ProSHADE::ProSHADE_settings
mapPhaselessToSphere() :
ProSHADE_internal::ProSHADE_data
mapResDefault :
ProSHADE::ProSHADE_settings
mapResolution :
ProSHADE::ProSHADE_settings
maskBlurFactor :
ProSHADE::ProSHADE_settings
maskBlurFactorGiven :
ProSHADE::ProSHADE_settings
maskMap() :
ProSHADE_internal::ProSHADE_data
matchMap() :
ProSHADE_internal::ProSHADE_data
maxAvgPeakForSymmetry() :
ProSHADE_internal::ProSHADE_comparePairwise
maxRotError :
ProSHADE::ProSHADE_settings
mPower :
ProSHADE::ProSHADE_settings
- n -
noIQRsFromMap :
ProSHADE::ProSHADE_settings
normaliseMap() :
ProSHADE_internal::ProSHADE_data
- o -
octaAxes :
ProSHADE_internal::ProSHADE_symmetry
overlayDefaults :
ProSHADE::ProSHADE_settings
- p -
peakDistanceForReal :
ProSHADE::ProSHADE_settings
peakHeightNoIQRs :
ProSHADE::ProSHADE_settings
peakSurroundingPoints :
ProSHADE::ProSHADE_settings
phi :
ProSHADE::ProSHADE_settings
precomputeRotInvDescriptor() :
ProSHADE_internal::ProSHADE_data
precomputeTrSigmaDescriptor() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
,
ProSHADE_internal::ProSHADE_comparePairwise
printInfo() :
ProSHADE_internal::ProSHADE_mapFeatures
printResultsClear() :
ProSHADE_internal::ProSHADE_symmetry
printResultsClearHTML() :
ProSHADE_internal::ProSHADE_symmetry
printResultsRequest() :
ProSHADE_internal::ProSHADE_symmetry
printResultsRequestHTML() :
ProSHADE_internal::ProSHADE_symmetry
printSettings() :
ProSHADE::ProSHADE_settings
ProSHADE() :
ProSHADE::ProSHADE
ProSHADE_compareOneAgainstAll() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
ProSHADE_comparePairwise() :
ProSHADE_internal::ProSHADE_comparePairwise
ProSHADE_data() :
ProSHADE_internal::ProSHADE_data
ProSHADE_distances() :
ProSHADE_internal::ProSHADE_distances
ProSHADE_mapFeatures() :
ProSHADE_internal::ProSHADE_mapFeatures
ProSHADE_settings() :
ProSHADE::ProSHADE_settings
ProSHADE_symmetry() :
ProSHADE_internal::ProSHADE_symmetry
- r -
removeIslands() :
ProSHADE_internal::ProSHADE_data
removePhaseFromMap() :
ProSHADE_internal::ProSHADE_data
removePhaseFromMapOverlay() :
ProSHADE_internal::ProSHADE_data
rotAngle :
ProSHADE::ProSHADE_settings
rotateStructure() :
ProSHADE_internal::ProSHADE_comparePairwise
rotChangeDefault :
ProSHADE::ProSHADE_settings
rotXAxis :
ProSHADE::ProSHADE_settings
rotYAxis :
ProSHADE::ProSHADE_settings
rotZAxis :
ProSHADE::ProSHADE_settings
- s -
saveDatabase() :
ProSHADE_internal::ProSHADE_distances
saveWithAndWithout :
ProSHADE::ProSHADE_settings
setEulerAngles() :
ProSHADE_internal::ProSHADE_comparePairwise
shellSpacing :
ProSHADE::ProSHADE_settings
shiftMap() :
ProSHADE_internal::ProSHADE_data
structFiles :
ProSHADE::ProSHADE_settings
symGapTolerance :
ProSHADE::ProSHADE_settings
symmetryFold :
ProSHADE::ProSHADE_settings
symmetryType :
ProSHADE::ProSHADE_settings
- t -
taskToPerform :
ProSHADE::ProSHADE_settings
tetrAxes :
ProSHADE_internal::ProSHADE_symmetry
theta :
ProSHADE::ProSHADE_settings
traceSigmaDist :
ProSHADE::ProSHADE_settings
translateMap() :
ProSHADE_internal::ProSHADE_data
trSigmaThreshold :
ProSHADE::ProSHADE_settings
- u -
useCOM :
ProSHADE::ProSHADE_settings
useCubicMaps :
ProSHADE::ProSHADE_settings
usePhase :
ProSHADE::ProSHADE_settings
- v -
verbose :
ProSHADE::ProSHADE_settings
volumeTolerance :
ProSHADE::ProSHADE_settings
- w -
wasBandGiven :
ProSHADE::ProSHADE_settings
wasBChangeGiven :
ProSHADE::ProSHADE_settings
wasExtraSpaceGiven :
ProSHADE::ProSHADE_settings
wasResolutionGiven :
ProSHADE::ProSHADE_settings
wasShellSpacingGiven :
ProSHADE::ProSHADE_settings
- x -
xTranslation :
ProSHADE::ProSHADE_settings
- y -
yTranslation :
ProSHADE::ProSHADE_settings
- z -
zTranslation :
ProSHADE::ProSHADE_settings
- ~ -
~ProSHADE() :
ProSHADE::ProSHADE
~ProSHADE_compareOneAgainstAll() :
ProSHADE_internal::ProSHADE_compareOneAgainstAll
~ProSHADE_comparePairwise() :
ProSHADE_internal::ProSHADE_comparePairwise
~ProSHADE_data() :
ProSHADE_internal::ProSHADE_data
~ProSHADE_distances() :
ProSHADE_internal::ProSHADE_distances
~ProSHADE_mapFeatures() :
ProSHADE_internal::ProSHADE_mapFeatures
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