Publications relevant to REFMAC5
Some but not all papers are available from respective journals's website as open access articles. If you need others please let us know.
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R.A. Nicholls, F. Long and G.N. Murshudov (2012) Low Resolution Refinement Tools in REFMAC5 Acta Cryst D68 (in press)
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Murshudov GN (2011) Some statistical properties of the crystallographic reliability index Rfactor: Effect of twinning. Applied and Computational Mathematics , 2011:10;250-261
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Murshudov GN, Skubak P, Lebedev AA, Pannu NS, Steiner RA, Nicholls RA, Winn MD, Long F, Vagin AA REFMAC5 for the Refinement of Macromolecular Crystal Structures Acta Cryst, 2011:D67;355-367
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Skubak, P, Murshudov GN and Pannu NP.A multivariate likelihood SIRAS function for phasing and model refinement Acta Cryst,2009:D65:1051-1061
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"Refinement of Macromolecular Structures by the Maximum-Likelihood method" G.N. Murshudov, A.A.Vagin and E.J.Dodson, (1997) in Acta Cryst. D53, 240-255
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Lebedev, AA, Vagin AA and Murshidov, GN. Intensity statistics in twinned crystals with examples from the PDB. Acta Cryst. 2006:D62;83-95
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Mooij WTM, Cohen SX, Joosten K, Murshudov GN and Perrakis A "Conditional Restraints": Restraining the Free Atoms in ARP/wARP. Structure 2009:17;183-189
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"Incorporation of Prior Phase Information Strengthen Maximum-Likelihood Structure Refinemen" N.J.Pannu, G.N.Murshudov, E.J.Dodson and R.J.ReadA (1998) Acta Cryst. section D54, 1285-1294
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"Efficient anisotropic refinement of Macromolecular structures using FFT" G.N.Murshudov, A.Lebedev, A.A.Vagin, K.S.Wilson and E.J.Dodson (1999) Acta Cryst. section D55, 247-255
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"Use of TLS parameters to model anisotropic displacements in macromolecular refinement" M. Winn, M. Isupov and G.N.Murshudov (2000) Acta Cryst. 2001:D57 122-133
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"Fisher's information matrix in maximum likelihood molecular refinement." Steiner R, Lebedev, A, Murshudov GN. Acta Cryst. 2003 D59: 2114-2124
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"Macromolecular TLS refinement in REFMAC at moderate resolutions" Winn MD, Murshudov GN, Papiz MZ. Method in Enzymology, 2003:374 300-321
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"Direct incorporation of experimental phase information in model refinement" Skubak P, Murshudov GN, Pannu NS. Acta Cryst. 2004 D60: 2196-2201
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"REFMAC5 dictionary: organisation of prior chemical knowledge and guidelines for its use." Vagin, AA, Steiner, RS, Lebedev, AA, Potterton, L, McNicholas, S, Long, F and Murshudov, GN. Acta Cryst. 2004 D60: 2284-2295