{"id":64,"date":"2025-01-21T15:50:35","date_gmt":"2025-01-21T15:50:35","guid":{"rendered":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/resources\/"},"modified":"2025-01-27T09:34:34","modified_gmt":"2025-01-27T09:34:34","slug":"resources","status":"publish","type":"page","link":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"\n<p><\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><a href=\"http:\/\/www.nemamod.org\">NemaMod<\/a><\/h3>\n\n\n\n<figure class=\"wp-block-image size-large is-resized\"><img loading=\"lazy\" decoding=\"async\" width=\"1024\" height=\"630\" src=\"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-content\/uploads\/sites\/38\/NemaMode_Network-1024x630.png\" alt=\"\" class=\"wp-image-213\" style=\"width:333px;height:auto\" srcset=\"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-content\/uploads\/sites\/38\/NemaMode_Network-1024x630.png 1024w, https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-content\/uploads\/sites\/38\/NemaMode_Network-300x185.png 300w, https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-content\/uploads\/sites\/38\/NemaMode_Network-768x473.png 768w, https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-content\/uploads\/sites\/38\/NemaMode_Network.png 1095w\" sizes=\"auto, (max-width: 1024px) 100vw, 1024px\" \/><\/figure>\n\n\n\n<p>NemaMod is an application for intuitive and rapid visualisation of neuropeptide connections in <em>C. elegans<\/em>. The data visualised in the app were collected for the paper <a href=\"https:\/\/www.cell.com\/action\/showPdf?pii=S0896-6273%2823%2900756-0\">Ripoll-S\u00e1nchez et al., 2023<\/a>, where we generated a network map of &#8220;wireless&#8221; neuropeptide signaling for the whole worm nervous system at single-cell resolution. Additional data are on <a href=\"https:\/\/figshare.com\/collections\/The_Neuropeptide_connectome_of_C_elegans\/6895870\/1\">figshare<\/a>.<\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><a href=\"https:\/\/www.youtube.com\/@wormbehavior\">Worm Behavioural Phenotype Data<\/a><\/h3>\n\n\n\n<p>Sample raw videos for each genotype in our behavioural phenotype database (published in <a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/23852451\/\">Yemini et al., 2013<\/a>) are available on the @wormbehavior Youtube channel. <\/p>\n\n\n\n<h3 class=\"wp-block-heading\"><a href=\"https:\/\/doi.org\/10.6084\/m9.figshare.c.3796345\">Single-neuron Ablation Phenotypes<\/a><\/h3>\n\n\n\n<p>The raw data for the paper <a href=\"https:\/\/pubmed.ncbi.nlm.nih.gov\/29045391\/\">Yan et al., 2017<\/a>, consisting of locomotion videos and feature measurements for single neuron ablations in the ventral nerve cord, are available on figshare.<\/p>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>NemaMod NemaMod is an application for intuitive and rapid visualisation of neuropeptide connections in C. elegans. The data visualised in the app were collected for the paper Ripoll-S\u00e1nchez et al., 2023, where we generated a network map of &#8220;wireless&#8221; neuropeptide signaling for the whole worm nervous system at single-cell resolution. Additional data are on figshare. [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":7,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_genesis_hide_title":false,"_genesis_hide_breadcrumbs":false,"_genesis_hide_singular_image":false,"_genesis_hide_footer_widgets":false,"_genesis_custom_body_class":"","_genesis_custom_post_class":"","_genesis_layout":"","footnotes":""},"categories":[],"class_list":{"0":"post-64","1":"page","2":"type-page","3":"status-publish","5":"entry"},"featured_image_src":null,"featured_image_src_square":null,"_links":{"self":[{"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/pages\/64","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/comments?post=64"}],"version-history":[{"count":3,"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/pages\/64\/revisions"}],"predecessor-version":[{"id":215,"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/pages\/64\/revisions\/215"}],"wp:attachment":[{"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/media?parent=64"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www2.mrc-lmb.cam.ac.uk\/groups\/wschafer\/wp-json\/wp\/v2\/categories?post=64"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}