Analyse results: Difference between revisions
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For a complete list of all metadata labels, on the command-line type: <code>relion_refine --print_metadata_labels</code> | For a complete list of all metadata labels, on the command-line type: <code>relion_refine --print_metadata_labels</code> | ||
TODO: mention resolution, noise spectra, angular distribution, | TODO: mention resolution, class distribution, noise spectra, angular distribution, | ||
Also mention utilities <code>relion_star_plottable</code> and <code>relion_star_printtable</code> | Also mention utilities <code>relion_star_plottable</code> and <code>relion_star_printtable</code> |
Revision as of 17:29, 4 October 2011
Output files
For every iteration, RELION will output the following files:
rootname_it000???_class000???.mrc
(orrootname_it000???_class000???.mrcs
for 2D refinements)rootname_it000???_optimiser.star
rootname_it000???_mlmodel.star
rootname_it000???_data.star
These files contain the following information, respectively:
- The images of the refined 2D/3D structures.
- General information about the optimisation process.
- Information about the refined model parameters apart from the images (e.g. the noise spectra, the spherical average of the signal-to-noise ratios in the reconstructed structures, the distribution of the images over the classes, the angular distributions, etc.
- For each of the individual experimental images: information about their CTF, optimal orientation, translation and class assignment, normalisation correction, height of the (normalised) probability distribution, etc .
What to look for
For a complete list of all metadata labels, on the command-line type: relion_refine --print_metadata_labels
TODO: mention resolution, class distribution, noise spectra, angular distribution,
Also mention utilities relion_star_plottable
and relion_star_printtable