Xmipp2coord: Difference between revisions
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(Created page with "#!/usr/bin/env csh # # if ($# == 3 ) then set xmdfile = $1 set tablename = $2 set downsample = $3 relion_star_printtable ${xmdfile} ${tablename} _micrograph _xcoor _ycoor ...") |
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<code> | |||
#!/usr/bin/env csh | #!/usr/bin/env csh | ||
# | # | ||
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echo "Run this script in the directory where all your mrc micrographs are" | echo "Run this script in the directory where all your mrc micrographs are" | ||
endif | endif | ||
</code> | |||
Revision as of 12:38, 26 March 2013
- !/usr/bin/env csh
if ($# == 3 ) then
set xmdfile = $1
set tablename = $2
set downsample = $3
relion_star_printtable ${xmdfile} ${tablename} _micrograph _xcoor _ycoor | awk -F"/" '{print $NF}' | sort > tt.dat
foreach mic (`cat tt.dat | awk '{print $1}' | uniq`)
set coordfile=`echo ${mic} | sed 's|.mrc|.coord|'`
echo "Creating " $coordfile " ... "
echo " x y density" > ${coordfile}
grep ${mic} tt.dat | awk -v"down=${downsample}" '{print down*$2, down*$3, "1.0"}' >> ${coordfile}
end
rm -f tt.dat
echo "Done!"
else
echo "Usage: " $0 "<input xmd file> <tablename> <downsamplefactor>"
echo "Run this script in the directory where all your mrc micrographs are"
endif