Make orientational distribution plot.csh: Difference between revisions
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(Created page with "<code> #!/usr/bin/env csh set rootname=$1 set iter=$2 set scale_sphere_size = 10 set modelstar=${rootname}_it0${iter}_model.star set samplstar=${rootname}_sampling.star set opt...") |
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<code> | <code> | ||
#!/usr/bin/env csh | #!/usr/bin/env csh | ||
set rootname=$1 | set rootname=$1 | ||
set iter=$2 | set iter=$2 | ||
set scale_sphere_size = 10 | set scale_sphere_size = 10 | ||
set modelstar=${rootname}_it0${iter}_model.star | set modelstar=${rootname}_it0${iter}_model.star | ||
set samplstar=${rootname}_sampling.star | set samplstar=${rootname}_sampling.star | ||
set optstar=${rootname}_it0${iter}_optimiser.star | set optstar=${rootname}_it0${iter}_optimiser.star | ||
set nrclasses = `grep _rlnNrClasses ${modelstar}|awk '{print $2}'` | set nrclasses = `grep _rlnNrClasses ${modelstar}|awk '{print $2}'` | ||
set radius = `grep _rlnParticleDiameter ${optstar} | awk '{print $2/2}'` | set radius = `grep _rlnParticleDiameter ${optstar} | awk '{print $2/2}'` | ||
relion_star_printtable ${samplstar} data_sampling_directions | awk '{i++; print i, $0}' > tmp0 | relion_star_printtable ${samplstar} data_sampling_directions | awk '{i++; print i, $0}' > tmp0 | ||
set iclass = 0 | set iclass = 0 | ||
while ($iclass < $nrclasses) | while ($iclass < $nrclasses) | ||
@ iclass++ | |||
relion_star_printtable ${modelstar} data_model_pdf_orient_class_${iclass} | awk '{i++; print i, $0}' > tmp1 | |||
join tmp0 tmp1 | awk '{print $1,6,$2,$3,0,0,0,$4}' > tmp2 | |||
set bildfile=${rootname}_it0${iter}_class${iclass}_orientdist.bild | |||
xmipp_angular_distribution_show -ang tmp2 -bild ${bildfile} -wcol 5 -r ${scale_sphere_size} -R ${radius} | |||
echo "written: " ${bildfile} | |||
end | end | ||
rm -f tmp0 tmp1 tmp2 | rm -f tmp0 tmp1 tmp2 | ||
echo "done! Use UCSF Chimera to visualise the BILD files (you may need to change the origins of your maps in the Volume Viewer window" | echo "done! Use UCSF Chimera to visualise the BILD files (you may need to change the origins of your maps in the Volume Viewer window" | ||
</code> | </code> |
Revision as of 15:46, 16 February 2012
#!/usr/bin/env csh
set rootname=$1
set iter=$2
set scale_sphere_size = 10
set modelstar=${rootname}_it0${iter}_model.star
set samplstar=${rootname}_sampling.star
set optstar=${rootname}_it0${iter}_optimiser.star
set nrclasses = `grep _rlnNrClasses ${modelstar}|awk '{print $2}'`
set radius = `grep _rlnParticleDiameter ${optstar} | awk '{print $2/2}'`
relion_star_printtable ${samplstar} data_sampling_directions | awk '{i++; print i, $0}' > tmp0
set iclass = 0
while ($iclass < $nrclasses)
@ iclass++
relion_star_printtable ${modelstar} data_model_pdf_orient_class_${iclass} | awk '{i++; print i, $0}' > tmp1
join tmp0 tmp1 | awk '{print $1,6,$2,$3,0,0,0,$4}' > tmp2
set bildfile=${rootname}_it0${iter}_class${iclass}_orientdist.bild
xmipp_angular_distribution_show -ang tmp2 -bild ${bildfile} -wcol 5 -r ${scale_sphere_size} -R ${radius}
echo "written: " ${bildfile}
end
rm -f tmp0 tmp1 tmp2
echo "done! Use UCSF Chimera to visualise the BILD files (you may need to change the origins of your maps in the Volume Viewer window"