TORQUE template script example: Difference between revisions
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### Switch to the working directory; | ### Switch to the working directory; | ||
cd $PBS_O_WORKDIR | cd $PBS_O_WORKDIR | ||
### Run: | |||
mpirun --bynode -np XXXmpinodesXXX XXXcommandXXX | mpirun --bynode -np XXXmpinodesXXX XXXcommandXXX | ||
echo "done" | echo "done" | ||
</code> | </code> |
Revision as of 09:58, 28 September 2011
#!/bin/bash
### Inherit all current environment variables
#PBS -V
### Job name
#PBS -N relion
### Output and Error
#PBS -e XXXerrfileXXX
#PBS -o XXXoutfileXXX
### Queue name
#PBS -q XXXqueueXXX
### Specify the number of nodes and thread (ppn) for your job.
#PBS -l nodes=XXXmpinodesXXX:ppn=XXXthreadsXXX
### Tell PBS the anticipated run-time for your job, where walltime=HH:MM:SS
###PBS -l walltime=XXXextra1XXX:00:00
#################################
### Switch to the working directory;
cd $PBS_O_WORKDIR
### Run:
mpirun --bynode -np XXXmpinodesXXX XXXcommandXXX
echo "done"