STAR file utilities: Difference between revisions
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== relion_star_datablock_stack == | == relion_star_datablock_stack == | ||
Generates the datablock for N images in a stack, optional labels (such as DefocusU/V, AmplitudeConstrast, etc values) can be given for each stack. | |||
relion_star_datablock_stack 4 my_images.mrcs 10000 10500 0.0 200 2 0.1 | |||
will yield: | |||
000001@my_images.mrcs 10000 10500 0.0 200 2 0.1 | |||
000002@my_images.mrcs 10000 10500 0.0 200 2 0.1 | |||
000003@my_images.mrcs 10000 10500 0.0 200 2 0.1 | |||
000004@my_images.mrcs 10000 10500 0.0 200 2 0.1 | |||
== relion_star_datablock_singlefiles == | == relion_star_datablock_singlefiles == | ||
Revision as of 14:24, 6 October 2011
For any of the programs below, instructions on how to use them are printed to the screen if no arguments are given.
relion_star_loopheader
This script generates the header of STAR-file with the given labels, in that order. Note that the order of the labels in the STAR header should be the same as the order of the entries on each line of the following datablock!!
relion_star_datablock_stack
Generates the datablock for N images in a stack, optional labels (such as DefocusU/V, AmplitudeConstrast, etc values) can be given for each stack.
relion_star_datablock_stack 4 my_images.mrcs 10000 10500 0.0 200 2 0.1
will yield:
000001@my_images.mrcs 10000 10500 0.0 200 2 0.1 000002@my_images.mrcs 10000 10500 0.0 200 2 0.1 000003@my_images.mrcs 10000 10500 0.0 200 2 0.1 000004@my_images.mrcs 10000 10500 0.0 200 2 0.1