STAR file utilities: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
| (19 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
= Overview of utilities = | |||
For any of the programs below, instructions on how to use them are printed to the screen if no arguments are given. | For any of the programs below, instructions on how to use them are printed to the screen if no arguments are given. | ||
* '''relion_star_loopheader''' : generates the header of STAR-file (with given labels) | |||
* '''relion_star_datablock_stack''' : generates the datablock for a given number of images in a stack | |||
* '''relion_star_datablock_singlefiles''' : generates the datablock for all images represented by a wildcard | |||
* '''relion_star_datablock_ctfdat''' : generates the datablock for all images inside an XMIPP-style <code>ctfdat</code> file. | |||
* '''relion_star_printtable''' : prints the contents of specified labels of a given datablock to the screen. | |||
* '''relion_star_plottable''' : uses gnuplot to produce XY-plots of columns in a datablock | |||
Examples on how to use these utilities are given on the [[Prepare input files]] and [[Analyse results]] pages. | |||
Latest revision as of 14:59, 6 October 2011
Overview of utilities
For any of the programs below, instructions on how to use them are printed to the screen if no arguments are given.
- relion_star_loopheader : generates the header of STAR-file (with given labels)
- relion_star_datablock_stack : generates the datablock for a given number of images in a stack
- relion_star_datablock_singlefiles : generates the datablock for all images represented by a wildcard
- relion_star_datablock_ctfdat : generates the datablock for all images inside an XMIPP-style
ctfdatfile. - relion_star_printtable : prints the contents of specified labels of a given datablock to the screen.
- relion_star_plottable : uses gnuplot to produce XY-plots of columns in a datablock
Examples on how to use these utilities are given on the Prepare input files and Analyse results pages.