Publications

• 2024
• 2021
• 2020
• 2019
• 2018
• 2017
• 2016
• 2015
• 2014
• 2013
• 2012
• 2011
• 2010
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• 2008
• 2007
• 2006
• 2005
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• 1980

2024

• Brito Querido, J., et al. (8th August 2024)
  Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
  Nat Commun 15(1): 6633
• Brito Querido, J., Sokabe, M., Díaz-López, I., Gordiyenko, Y., Fraser, C.S., Ramakrishnan, V. (29th March 2024)
  The structure of a human translation initiation complex reveals two independent roles for the helicase eIF4A.
  Nat Struct Mol Biol 31(3): 455-464
• Brito Querido, J., Díaz-López, I., Ramakrishnan, V. (5th March 2024)
  The molecular basis of translation initiation and its regulation in eukaryotes.
  Nat Rev Mol Cell Biol 25(3): 168-186

2021

• Chandrasekaran, V., Desai, N., Burton, N.O., Yang, H., Price, J., Miska, E.A., Ramakrishnan, V. (5th October 2021)
  Visualizing formation of the active site in the mitochondrial ribosome.
  Elife 10

2020

• Desai, N., Yang, H., Chandrasekaran, V., Kazi, R., Minczuk, M., Ramakrishnan, V. (27th November 2020)
  Elongational stalling activates mitoribosome-associated quality control.
  Science 370(6520): 1105-1110
• Brito Querido, J., et al. (4th September 2020)
  Structure of a human 48 translational initiation complex.
  Science 369(6508): 1220-1227

2019

• Chandrasekaran, V., et al. (25th December 2019)
  Mechanism of ribosome stalling during translation of a poly(A) tail.
  Nat Struct Mol Biol 26(12): 1132-1140
• Gordiyenko, Y., Llácer, J.L., Ramakrishnan, V. (14th June 2019)
  Structural basis for the inhibition of translation through eIF2α phosphorylation.
  Nat Commun 10(1): 2640
• Rae, C.D., Gordiyenko, Y., Ramakrishnan, V. (15th February 2019)
  How a circularized tmRNA moves through the ribosome.
  Science 363(6428): 740-744

2018

• Llácer, J.L., et al. (30th November 2018)
  Translational initiation factor eIF5 replaces eIF1 on the 40S ribosomal subunit to promote start-codon recognition.
  Elife 7
• Ramakrishnan, V., Henderson, R. (23rd November 2018)
  Thomas A. Steitz (1940-2018).
  Science 362(6417): 897
• Juszkiewicz, S., Chandrasekaran, V., Lin, Z., Kraatz, S., Ramakrishnan, V., Hegde, R.S. (1st November 2018)
  ZNF598 Is a Quality Control Sensor of Collided Ribosomes.
  Mol Cell 72(3): 469-481.e7

2017

• Brown, A., et al. (11th October 2017)
  Structures of the human mitochondrial ribosome in native states of assembly.
  Nat Struct Mol Biol 24(10): 866-869
• Desai, N., Brown, A., Amunts, A., Ramakrishnan, V. (3rd February 2017)
  The structure of the yeast mitochondrial ribosome.
  Science 355(6324): 528-531
• Ramakrishnan, V.R., Gitomer, S., Kofonow, J.M., Robertson, C.E., Frank, D.N. (14th January 2017)
  Investigation of sinonasal microbiome spatial organization in chronic rhinosinusitis.
  Int Forum Allergy Rhinol 7(1): 16-23

2016

• James, N.R., Brown, A., Gordiyenko, Y., Ramakrishnan, V. (16th December 2016)
  Translational termination without a stop codon.
  Science 354(6318): 1437-1440
• Shao, S., Murray, J., Brown, A., Taunton, J., Ramakrishnan, V., Hegde, R.S. (17th November 2016)
  Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
  Cell 167(5): 1229-1240.e15
• Hussain, T., Llácer, J.L., Wimberly, B.T., Kieft, J.S., Ramakrishnan, V. (22nd September 2016)
  Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
  Cell 167(1): 133-144.e13
• Hauser, L.J., Ir, D., Kingdom, T.T., Robertson, C.E., Frank, D.N., Ramakrishnan, V.R. (17th August 2016)
  Evaluation of bacterial transmission to the paranasal sinuses through sinus irrigation.
  Int Forum Allergy Rhinol 6(8): 800-6
• Brown, A., Fernández, I.S., Gordiyenko, Y., Ramakrishnan, V. (9th June 2016)
  Ribosome-dependent activation of stringent control.
  Nature 534(7606): 277-280
• Murray, J., Savva, C.G., Shin, B.S., Dever, T.E., Ramakrishnan, V., Fernández, I.S. (9th May 2016)
  Structural characterization of ribosome recruitment and translocation by type IV IRES.
  Elife 5
• Hauser, L.J., Ir, D., Kingdom, T.T., Robertson, C.E., Frank, D.N., Ramakrishnan, V.R. (21st January 2016)
  Investigation of bacterial repopulation after sinus surgery and perioperative antibiotics.
  Int Forum Allergy Rhinol 6(1): 34-40
• Lee, J.T., Frank, D.N., Ramakrishnan, V. (2016)
  Microbiome of the paranasal sinuses: Update and literature review.
  Am J Rhinol Allergy 30(1): 3-16

2015

• Ramakrishnan, V.R., Frank, D.N. (14th November 2015)
  Impact of cigarette smoking on the middle meatus microbiome in health and chronic rhinosinusitis.
  Int Forum Allergy Rhinol 5(11): 981-9
• Brown, A., Shao, S., Murray, J., Hegde, R.S., Ramakrishnan, V. (27th August 2015)
  Structural basis for stop codon recognition in eukaryotes.
  Nature 524(7566): 493-496
• Ramakrishnan, V.R., Hauser, L.J., Feazel, L.M., Ir, D., Robertson, C.E., Frank, D.N. (26th August 2015)
  Sinus microbiota varies among chronic rhinosinusitis phenotypes and predicts surgical outcome.
  J Allergy Clin Immunol 136(2): 334-42.e1
• Llácer, J.L., et al. (6th August 2015)
  Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex.
  Mol Cell 59(3): 399-412
• Keane, S.C., et al. (22nd May 2015)
  RNA structure. Structure of the HIV-1 RNA packaging signal.
  Science 348(6237): 917-21
• Amunts, A., Brown, A., Toots, J., Scheres, S.H.W., Ramakrishnan, V. (3rd April 2015)
  Ribosome. The structure of the human mitochondrial ribosome.
  Science 348(6230): 95-98
• Amunts, A., Fiedorczuk, K., Truong, T.T., Chandler, J., Greenberg, E.P., Ramakrishnan, V. (27th February 2015)
  Bactobolin A binds to a site on the 70S ribosome distinct from previously seen antibiotics.
  J Mol Biol 427(4): 753-755
• Hauser, L.J., et al. (2nd January 2015)
  Sinus culture poorly predicts resident microbiota.
  Int Forum Allergy Rhinol 5(1): 3-9

2014

• Ramakrishnan, V. (20th November 2014)
  The ribosome emerges from a black box.
  Cell 159(5): 979-984
• Brown, A., et al. (7th November 2014)
  Structure of the large ribosomal subunit from human mitochondria.
  Science 346(6210): 718-722
• Hussain, T., et al. (23rd October 2014)
  Structural changes enable start codon recognition by the eukaryotic translation initiation complex.
  Cell 159(3): 597-607
• Fernández, I.S., Bai, X.C., Murshudov, G., Scheres, S.H., Ramakrishnan, V. (8th May 2014)
  Initiation of translation by cricket paralysis virus IRES requires its translocation in the ribosome.
  Cell 157(4): 823-31
• Amunts, A., et al. (28th March 2014)
  Structure of the yeast mitochondrial large ribosomal subunit.
  Science 343(6178): 1485-1489
• Ban, N., et al. (10th February 2014)
  A new system for naming ribosomal proteins.
  Curr Opin Struct Biol 24: 165-9
• Metri, R., Jerath, G., Kailas, G., Gacche, N., Pal, A., Ramakrishnan, V. (2014)
  Structure-based barcoding of proteins.
  Protein Sci 23(1): 117-20
• Perez-Fernandez, D., et al. (2014)
  4'-O-substitutions determine selectivity of aminoglycoside antibiotics.
  Nat Commun 5: 3112

2013

• Ramakrishnan, V.R., Feazel, L.M., Gitomer, S.A., Ir, D., Robertson, C.E., Frank, D.N. (30th December 2013)
  The microbiome of the middle meatus in healthy adults.
  PLoS One 8(12): e85507
• Fernández, I.S., et al. (15th November 2013)
  Molecular architecture of a eukaryotic translational initiation complex.
  Science 342(6160): 1240585
• Tourigny, D.S., et al. (23rd October 2013)
  Crystal structure of a bioactive pactamycin analog bound to the 30S ribosomal subunit.
  J Mol Biol 425(20): 3907-10
• Akers, J.C., et al. (21st October 2013)
  MiR-21 in the extracellular vesicles (EVs) of cerebrospinal fluid (CSF): a platform for glioblastoma biomarker development.
  PLoS One 8(10): e78115
• Agirrezabala, X., Fernández, I.S., Kelley, A.C., Cartón, D.G., Ramakrishnan, V., Valle, M. (23rd September 2013)
  The ribosome triggers the stringent response by RelA via a highly distorted tRNA.
  EMBO Rep 14(9): 811-6
• Fernández, I.S., Ng, C.L., Kelley, A.C., Wu, G., Yu, Y.T., Ramakrishnan, V. (1st August 2013)
  Unusual base pairing during the decoding of a stop codon by the ribosome.
  Nature 500(7460): 107-10
• Tourigny, D.S., Fernández, I.S., Kelley, A.C., Ramakrishnan, V. (28th June 2013)
  Elongation factor G bound to the ribosome in an intermediate state of translocation.
  Science 340(6140): 1235490
• Voorhees, R.M., Mandal, D., Neubauer, C., Köhrer, C., RajBhandary, U.L., Ramakrishnan, V. (31st May 2013)
  The structural basis for specific decoding of AUA by isoleucine tRNA on the ribosome.
  Nat Struct Mol Biol 20(5): 641-3
• Voorhees, R.M., Ramakrishnan, V. (2013)
  Structural basis of the translational elongation cycle.
  Annu Rev Biochem 82: 203-36

2012

• Matt, T., et al. (3rd July 2012)
  Dissociation of antibacterial activity and aminoglycoside ototoxicity in the 4-monosubstituted 2-deoxystreptamine apramycin.
  Proc Natl Acad Sci U S A 109(27): 10984-9
• Selmer, M., Gao, Y.G., Weixlbaumer, A., Ramakrishnan, V. (17th May 2012)
  Ribosome engineering to promote new crystal forms.
  Acta Crystallogr D Biol Crystallogr 68(Pt 5): 578-83
• Neubauer, C., Gillet, R., Kelley, A.C., Ramakrishnan, V. (16th March 2012)
  Decoding in the absence of a codon by tmRNA and SmpB in the ribosome.
  Science 335(6074): 1366-9

2011

• Jin, H., Kelley, A.C., Ramakrishnan, V. (20th September 2011)
  Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3.
  Proc Natl Acad Sci U S A 108(38): 15798-803
• Ramakrishnan, V. (20th September 2011)
  Profile of Venkatraman Ramakrishnan. Interview by Prashant Nair.
  Proc Natl Acad Sci U S A 108(38): 15676-8
• Schmeing, T.M., Voorhees, R.M., Kelley, A.C., Ramakrishnan, V. (6th April 2011)
  How mutations in tRNA distant from the anticodon affect the fidelity of decoding.
  Nat Struct Mol Biol 18(4): 432-6
• Ramakrishnan, V. (11th February 2011)
  Molecular biology. The eukaryotic ribosome.
  Science 331(6018): 681-2

2010

• Demirci, H., et al. (20th December 2010)
  Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.
  RNA 16(12): 2319-24
• Voorhees, R.M., Schmeing, T.M., Kelley, A.C., Ramakrishnan, V. (5th November 2010)
  The mechanism for activation of GTP hydrolysis on the ribosome.
  Science 330(6005): 835-838
• Ng, C.L., Lang, K., Meenan, N.A., Sharma, A., Kelley, A.C., Kleanthous, C., Ramakrishnan, V. (19th October 2010)
  Structural basis for 16S ribosomal RNA cleavage by the cytotoxic domain of colicin E3.
  Nat Struct Mol Biol 17(10): 1241-1246
• Ramakrishnan, V. (14th June 2010)
  Unraveling the structure of the ribosome (Nobel Lecture).
  Angew Chem Int Ed Engl 49(26): 4355-80
• Jin, H., Kelley, A.C., Loakes, D., Ramakrishnan, V. (11th May 2010)
  Structure of the 70S ribosome bound to release factor 2 and a substrate analog provides insights into catalysis of peptide release.
  Proc Natl Acad Sci U S A 107(19): 8593-8

2009

• Kumar, A., Ramakrishnan, V., Ranbhor, R., Patel, K., Durani, S. (24th December 2009)
  Homochiral stereochemistry: the missing link of structure to energetics in protein folding.
  J Phys Chem B 113(51): 16435-42
• Neubauer, C., et al. (11th December 2009)
  The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
  Cell 139(6): 1084-95
• Ramakrishnan, V. (2nd December 2009)
  The ribosome: some hard facts about its structure and hot air about its evolution.
  Cold Spring Harb Symp Quant Biol 74: 25-33
• Schmeing, T.M., Voorhees, R.M., Kelley, A.C., Gao, Y.G., Murphy, F.V., Weir, J.R., Ramakrishnan, V. (30th October 2009)
  The crystal structure of the ribosome bound to EF-Tu and aminoacyl-tRNA.
  Science 326(5953): 688-694
• Gao, Y.G., Selmer, M., Dunham, C.M., Weixlbaumer, A., Kelley, A.C., Ramakrishnan, V. (30th October 2009)
  The structure of the ribosome with elongation factor G trapped in the posttranslocational state.
  Science 326(5953): 694-9
• Schmeing, T.M., Ramakrishnan, V. (29th October 2009)
  What recent ribosome structures have revealed about the mechanism of translation.
  Nature 461(7268): 1234-42
• Aaltonen, T., et al. (19th June 2009)
  Evidence for a narrow near-threshold structure in the J/psivarphi mass spectrum in B;{+} --> J/psivarphiK;{+} decays.
  Phys Rev Lett 102(24): 242002
• Voorhees, R.M., Weixlbaumer, A., Loakes, D., Kelley, A.C., Ramakrishnan, V. (12th May 2009)
  Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome.
  Nat Struct Mol Biol 16(5): 528-33
• Schuette, J.C., et al. (18th March 2009)
  GTPase activation of elongation factor EF-Tu by the ribosome during decoding.
  EMBO J 28(6): 755-65

2008

• Weixlbaumer, A., Jin, H., Neubauer, C., Voorhees, R.M., Petry, S., Kelley, A.C., Ramakrishnan, V. (7th November 2008)
  Insights into translational termination from the structure of RF2 bound to the ribosome.
  Science 322(5903): 953-6
• Ramakrishnan, V. (2008)
  What we have learned from ribosome structures.
  Biochem Soc Trans 36(Pt 4): 567-74
• Kurata, S., et al. (4th July 2008)
  Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U.G wobble pairing during decoding.
  J Biol Chem 283(27): 18801-11
• Petry, S., Weixlbaumer, A., Ramakrishnan, V. (2008)
  The termination of translation.
  Curr Opin Struct Biol 18(1): 70-7

2007

• Weixlbaumer, A., Petry, S., Dunham, C.M., Selmer, M., Kelley, A.C., Ramakrishnan, V. (29th August 2007)
  Crystal structure of the ribosome recycling factor bound to the ribosome.
  Nat Struct Mol Biol 14(8): 733-7
• Weixlbaumer, A., et al. (13th June 2007)
  Mechanism for expanding the decoding capacity of transfer RNAs by modification of uridines.
  Nat Struct Mol Biol 14(6): 498-502
• Dunham, C.M., Selmer, M., Phelps, S.S., Kelley, A.C., Suzuki, T., Joseph, S., Ramakrishnan, V. (6th June 2007)
  Structures of tRNAs with an expanded anticodon loop in the decoding center of the 30S ribosomal subunit.
  RNA 13(6): 817-23
• Passmore, L.A., et al. (13th April 2007)
  The eukaryotic translation initiation factors eIF1 and eIF1A induce an open conformation of the 40S ribosome.
  Mol Cell 26(1): 41-50

2006

• Selmer, M., et al. (29th September 2006)
  Structure of the 70S ribosome complexed with mRNA and tRNA.
  Science 313(5795): 1935-42

2005

• Petry, S., et al. (29th December 2005)
  Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon.
  Cell 123(7): 1255-66
• Daviter, T., Murphy, F.V., Ramakrishnan, V. (20th May 2005)
  Molecular biology. A renewed focus on transfer RNA.
  Science 308(5725): 1123-4
• Ramakrishnan, V., Ogram, A.V., Lindner, A.S. (2005)
  Impacts of co-solvent flushing on microbial populations capable of degrading trichloroethylene.
  Environ Health Perspect 113(1): 55-61
• Ogle, J.M., Ramakrishnan, V. (2005)
  Structural insights into translational fidelity.
  Annu Rev Biochem 74: 129-77

2004

• Murphy, F.V., Ramakrishnan, V., Malkiewicz, A., Agris, P.F. (21st December 2004)
  The role of modifications in codon discrimination by tRNA(Lys)UUU.
  Nat Struct Mol Biol 11(12): 1186-91
• Murphy, F.V., Ramakrishnan, V. (21st December 2004)
  Structure of a purine-purine wobble base pair in the decoding center of the ribosome.
  Nat Struct Mol Biol 11(12): 1251-2
• Razeto, A., et al. (13th February 2004)
  Structure of the NCoA-1/SRC-1 PAS-B domain bound to the LXXLL motif of the STAT6 transactivation domain.
  J Mol Biol 336(2): 319-29

2003

• Brodersen, D.E., Clemons, W.M., Carter, A.P., Wimberly, B.T., Ramakrishnan, V. (23rd November 2003)
  Phasing the 30S ribosomal subunit structure.
  Acta Crystallogr D Biol Crystallogr 59(Pt 11): 2044-50
• Ogle, J.M., Carter, A.P., Ramakrishnan, V. (2003)
  Insights into the decoding mechanism from recent ribosome structures.
  Trends Biochem Sci 28(5): 259-66
• Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J. (4th April 2003)
  Visualizing tmRNA entry into a stalled ribosome.
  Science 300(5616): 127-30
• Brodersen, D.E., Ramakrishnan, V. (2003)
  Shape can be seductive.
  Nat Struct Biol 10(2): 78-80

2002

• Ogle, J.M., Murphy, F.V., Tarry, M.J., Ramakrishnan, V. (27th November 2002)
  Selection of tRNA by the ribosome requires a transition from an open to a closed form.
  Cell 111(5): 721-32
• Ramakrishnan, V. (22nd February 2002)
  Ribosome structure and the mechanism of translation.
  Cell 108(4): 557-72
• Brodersen, D.E., Clemons, W.M., Carter, A.P., Wimberly, B.T., Ramakrishnan, V. (22nd February 2002)
  Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 S RNA.
  J Mol Biol 316(3): 725-68
• Arndt, J.W., Hao, B., Ramakrishnan, V., Cheng, T., Chan, S.I., Chan, M.K. (2002)
  Crystal structure of a novel carboxypeptidase from the hyperthermophilic archaeon Pyrococcus furiosus.
  Structure 10(2): 215-24

2001

• Clemons, W.M., et al. (20th July 2001)
  Crystal structure of the 30 S ribosomal subunit from Thermus thermophilus: purification, crystallization and structure determination.
  J Mol Biol 310(4): 827-43
• Ogle, J.M., Brodersen, D.E., Clemons, W.M., Tarry, M.J., Carter, A.P., Ramakrishnan, V. (4th May 2001)
  Recognition of cognate transfer RNA by the 30S ribosomal subunit.
  Science 292(5518): 897-902
• Ramakrishnan, V., Moore, P.B. (2001)
  Atomic structures at last: the ribosome in 2000.
  Curr Opin Struct Biol 11(2): 144-54
• Carter, A.P., et al. (19th January 2001)
  Crystal structure of an initiation factor bound to the 30S ribosomal subunit.
  Science 291(5503): 498-501
• Brodersen, D.E., et al. (2001)
  Atomic structures of the 30S subunit and its complexes with ligands and antibiotics.
  Cold Spring Harb Symp Quant Biol 66: 17-32

2000

• Brodersen, D.E., Clemons, W.M., Carter, A.P., Morgan-Warren, R.J., Wimberly, B.T., Ramakrishnan, V. (22nd December 2000)
  The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit.
  Cell 103(7): 1143-54
• Wimberly, B.T., et al. (21st September 2000)
  Structure of the 30S ribosomal subunit.
  Nature 407(6802): 327-39
• Carter, A.P., Clemons, W.M., Brodersen, D.E., Morgan-Warren, R.J., Wimberly, B.T., Ramakrishnan, V. (21st September 2000)
  Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.
  Nature 407(6802): 340-8
• Allard, P., et al. (15th August 2000)
  Another piece of the ribosome: solution structure of S16 and its location in the 30S subunit.
  Structure 8(8): 875-82
• Shu, F., Ramakrishnan, V., Schoenborn, B.P. (11th April 2000)
  Enhanced visibility of hydrogen atoms by neutron crystallography on fully deuterated myoglobin.
  Proc Natl Acad Sci U S A 97(8): 3872-7

1999

• Angus-Hill, M.L., Dutnall, R.N., Tafrov, S.T., Sternglanz, R., Ramakrishnan, V. (17th December 1999)
  Crystal structure of the histone acetyltransferase Hpa2: A tetrameric member of the Gcn5-related N-acetyltransferase superfamily.
  J Mol Biol 294(5): 1311-25
• Clemons, W.M., Gowda, K., Black, S.D., Zwieb, C., Ramakrishnan, V. (24th September 1999)
  Crystal structure of the conserved subdomain of human protein SRP54M at 2.1 A resolution: evidence for the mechanism of signal peptide binding.
  J Mol Biol 292(3): 697-705
• Clemons, W.M., May, J.L., Wimberly, B.T., McCutcheon, J.P., Capel, M.S., Ramakrishnan, V. (26th August 1999)
  Structure of a bacterial 30S ribosomal subunit at 5.5 A resolution.
  Nature 400(6747): 833-40
• Wimberly, B.T., Guymon, R., McCutcheon, J.P., White, S.W., Ramakrishnan, V. (14th May 1999)
  A detailed view of a ribosomal active site: the structure of the L11-RNA complex.
  Cell 97(4): 491-502
• McCutcheon, J.P., et al. (13th April 1999)
  Location of translational initiation factor IF3 on the small ribosomal subunit.
  Proc Natl Acad Sci U S A 96(8): 4301-6

1998

• Zhou, Y.B., Gerchman, S.E., Ramakrishnan, V., Travers, A., Muyldermans, S. (24th September 1998)
  Position and orientation of the globular domain of linker histone H5 on the nucleosome.
  Nature 395(6700): 402-5
• Dutnall, R.N., Tafrov, S.T., Sternglanz, R., Ramakrishnan, V. (21st August 1998)
  Structure of the histone acetyltransferase Hat1: a paradigm for the GCN5-related N-acetyltransferase superfamily.
  Cell 94(4): 427-38
• Davies, C., Gerstner, R.B., Draper, D.E., Ramakrishnan, V., White, S.W. (17th August 1998)
  The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif.
  EMBO J 17(16): 4545-58
• Davies, C., Bussiere, D.E., Golden, B.L., Porter, S.J., Ramakrishnan, V., White, S.W. (19th June 1998)
  Ribosomal proteins S5 and L6: high-resolution crystal structures and roles in protein synthesis and antibiotic resistance.
  J Mol Biol 279(4): 873-88
• Ramakrishnan, V., White, S.W. (1998)
  Ribosomal protein structures: insights into the architecture, machinery and evolution of the ribosome.
  Trends Biochem Sci 23(6): 208-12
• Clemons, W.M., Davies, C., White, S.W., Ramakrishnan, V. (15th April 1998)
  Conformational variability of the N-terminal helix in the structure of ribosomal protein S15.
  Structure 6(4): 429-38
• Dutnall, R.N., Tafrov, S.T., Sternglanz, R., Ramakrishnan, V. (1998)
  Structure of the yeast histone acetyltransferase Hat1: insights into substrate specificity and implications for the Gcn5-related N-acetyltransferase superfamily.
  Cold Spring Harb Symp Quant Biol 63: 501-7

1997

• Dutnall, R.N., Ramakrishnan, V. (15th October 1997)
  Twists and turns of the nucleosome: tails without ends.
  Structure 5(10): 1255-9
• Wimberly, B.T., White, S.W., Ramakrishnan, V. (15th September 1997)
  The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids.
  Structure 5(9): 1187-98
• Ramakrishnan, V., Biou, V. (1997)
  [31] Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement.
  Methods Enzymol 276: 538-557
• Ramakrishnan, V. (1997)
  Histone structure and the organization of the nucleosome.
  Annu Rev Biophys Biomol Struct 26: 83-112
• Ramakrishnan, V. (1997)
  Histone H1 and chromatin higher-order structure.
  Crit Rev Eukaryot Gene Expr 7(3): 215-30
• Ramakrishnan, V., Biou, V. (1997)
  Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement.
  Methods Enzymol 276: 538-57

1996

• Hoffman, D.W., Cameron, C.S., Davies, C., White, S.W., Ramakrishnan, V. (20th December 1996)
  Ribosomal protein L9: a structure determination by the combined use of X-ray crystallography and NMR spectroscopy.
  J Mol Biol 264(5): 1058-71
• Davies, C., Ramakrishnan, V., White, S.W. (15th September 1996)
  Structural evidence for specific S8-RNA and S8-protein interactions within the 30S ribosomal subunit: ribosomal protein S8 from Bacillus stearothermophilus at 1.9 A resolution.
  Structure 4(9): 1093-104
• Goytisolo, F.A., Gerchman, S.E., Yu, X., Rees, C., Graziano, V., Ramakrishnan, V., Thomas, J.O. (1st July 1996)
  Identification of two DNA-binding sites on the globular domain of histone H5.
  EMBO J 15(13): 3421-9
• Hamiche, A., Schultz, P., Ramakrishnan, V., Oudet, P., Prunell, A. (22nd March 1996)
  Linker histone-dependent DNA structure in linear mononucleosomes.
  J Mol Biol 257(1): 30-42
• Jaishree, T.N., Ramakrishnan, V., White, S.W. (5th March 1996)
  Solution structure of prokaryotic ribosomal protein S17 by high-resolution NMR spectroscopy.
  Biochemistry 35(9): 2845-53
• Davies, C., White, S.W., Ramakrishnan, V. (15th January 1996)
  The crystal structure of ribosomal protein L14 reveals an important organizational component of the translational apparatus.
  Structure 4(1): 55-66
• Shu, F., Ramakrishnan, V., Schoenborn, B.P. (1996)
  High-level expression and deuteration of sperm whale myoglobin. A study of its solvent structure by X-ray and neutron diffraction methods.
  Basic Life Sci 64: 309-23
• Graziano, V., Gerchman, S.E., Schneider, D.K., Ramakrishnan, V. (1996)
  Neutron scattering studies on chromatin higher-order structure.
  Basic Life Sci 64: 127-36

1995

• Ramakrishnan, V. (5th December 1995)
  The histone fold: evolutionary questions.
  Proc Natl Acad Sci U S A 92(25): 11328-30
• Biou, V., Shu, F., Ramakrishnan, V. (15th August 1995)
  X-ray crystallography shows that translational initiation factor IF3 consists of two compact alpha/beta domains linked by an alpha-helix.
  EMBO J 14(16): 4056-64
• Kycia, J.H., Biou, V., Shu, F., Gerchman, S.E., Graziano, V., Ramakrishnan, V. (9th May 1995)
  Prokaryotic translation initiation factor IF3 is an elongated protein consisting of two crystallizable domains.
  Biochemistry 34(18): 6183-7
• Ramakrishnan, V., et al. (1995)
  Structures of prokaryotic ribosomal proteins: implications for RNA binding and evolution.
  Biochem Cell Biol 73(11-12): 979-86

1994

• Cerf, C., et al. (20th September 1994)
  Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: full assignment, tertiary structure, and comparison with the globular domain of histone H5.
  Biochemistry 33(37): 11079-86
• Davies, C., Gerchman, S.E., Kycia, J.H., McGee, K., Ramakrishnan, V., White, S.W. (1st September 1994)
  Crystallization and preliminary X-ray diffraction studies of bacterial ribosomal protein L14.
  Acta Crystallogr D Biol Crystallogr 50(Pt 5): 790-2
• Gerchman, S.E., Graziano, V., Ramakrishnan, V. (1994)
  Expression of chicken linker histones in E. coli: sources of problems and methods for overcoming some of the difficulties.
  Protein Expr Purif 5(3): 242-51
• Graziano, V., Gerchman, S.E., Schneider, D.K., Ramakrishnan, V. (24th March 1994)
  Histone H1 is located in the interior of the chromatin 30-nm filament.
  Nature 368(6469): 351-4
• Hoffman, D.W., Davies, C., Gerchman, S.E., Kycia, J.H., Porter, S.J., White, S.W., Ramakrishnan, V. (1st January 1994)
  Crystal structure of prokaryotic ribosomal protein L9: a bi-lobed RNA-binding protein.
  EMBO J 13(1): 205-12

1993

• Golden, B.L., Ramakrishnan, V., White, S.W. (15th December 1993)
  Ribosomal protein L6: structural evidence of gene duplication from a primitive RNA binding protein.
  EMBO J 12(13): 4901-8
• Golden, B.L., Hoffman, D.W., Ramakrishnan, V., White, S.W. (30th November 1993)
  Ribosomal protein S17: characterization of the three-dimensional structure by 1H and 15N NMR.
  Biochemistry 32(47): 12812-20
• Cerf, C., et al. (26th October 1993)
  Homo- and heteronuclear two-dimensional NMR studies of the globular domain of histone H1: sequential assignment and secondary structure.
  Biochemistry 32(42): 11345-51
• Ramakrishnan, V., Finch, J.T., Graziano, V., Lee, P.L., Sweet, R.M. (18th March 1993)
  Crystal structure of globular domain of histone H5 and its implications for nucleosome binding.
  Nature 362(6417): 219-23

1992

• Ramakrishnan, V., White, S.W. (27th August 1992)
  The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA.
  Nature 358(6389): 768-71

1991

• Mangel, W.F., Lin, B.H., Ramakrishnan, V. (25th May 1991)
  Conformation of one- and two-chain high molecular weight urokinase analyzed by small-angle neutron scattering and vacuum ultraviolet circular dichroism.
  J Biol Chem 266(15): 9408-12
• Ramakrishnan, V., Patthy, L., Mangel, W.F. (23rd April 1991)
  Conformation of Lys-plasminogen and the kringle 1-3 fragment of plasminogen analyzed by small-angle neutron scattering.
  Biochemistry 30(16): 3963-9
• Ramakrishnan, V., Gerchman, S.E. (15th January 1991)
  Cloning, sequencing, and overexpression of genes for ribosomal proteins from Bacillus stearothermophilus.
  J Biol Chem 266(2): 880-5

1990

• Graziano, V., Ramakrishnan, V. (20th August 1990)
  Interaction of HMG14 with chromatin.
  J Mol Biol 214(4): 897-910
• Mangel, W.F., Lin, B.H., Ramakrishnan, V. (6th April 1990)
  Characterization of an extremely large, ligand-induced conformational change in plasminogen.
  Science 248(4951): 69-73
• Graziano, V., et al. (20th March 1990)
  Crystallization of the globular domain of histone H5.
  J Mol Biol 212(2): 253-7
• Ramakrishnan, V., Sinicropi, D.V., Dere, R., Darbonne, W.C., Bechtol, K.B., Baker, J.B. (15th February 1990)
  Interaction of wild-type and catalytically inactive mutant forms of tissue-type plasminogen activator with human umbilical vein endothelial cell monolayers.
  J Biol Chem 265(5): 2755-62

1988

• Graziano, V., Gerchman, S.E., Ramakrishnan, V. (20th October 1988)
  Reconstitution of chromatin higher-order structure from histone H5 and depleted chromatin.
  J Mol Biol 203(4): 997-1007
• Capel, M.S., Ramakrishnan, V. (1988)
  Neutron-scattering topography of proteins of the small ribosomal subunit.
  Methods Enzymol 164: 117-31

1987

• Capel, M.S., et al. (4th December 1987)
  A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli.
  Science 238(4832): 1403-6
• Gerchman, S.E., Ramakrishnan, V. (1987)
  Chromatin higher-order structure studied by neutron scattering and scanning transmission electron microscopy.
  Proc Natl Acad Sci U S A 84(22): 7802-6

1986

• Ramakrishnan, V., Graziano, V., Capel, M.S. (15th November 1986)
  A role for proteins S3 and S14 in the 30 S ribosomal subunit.
  J Biol Chem 261(32): 15049-52
• Ramakrishnan, V. (28th March 1986)
  Distribution of protein and RNA in the 30S ribosomal subunit.
  Science 231(4745): 1562-4

1984

• Wobbe, C.R., Mitra, S., Ramakrishnan, V. (18th December 1984)
  Structure of the capsid of Kilham rat virus from small-angle neutron scattering.
  Biochemistry 23(26): 6565-9
• Ramakrishnan, V., Capel, M., Kjeldgaard, M., Engelman, D.M., Moore, P.B. (5th April 1984)
  Positions of proteins S14, S18 and S20 in the 30 S ribosomal subunit of Escherichia coli.
  J Mol Biol 174(2): 265-84
• Donnelly, M.I., Hartman, F.C., Ramakrishnan, V. (10th January 1984)
  The shape of ribulose bisphosphate carboxylase/oxygenase in solution as inferred from small angle neutron scattering.
  J Biol Chem 259(1): 406-11
• Moore, P.B., et al. (1984)
  Neutron scattering and the 30 S ribosomal subunit of E. coli.
  Basic Life Sci 27: 73-91

1983

• Uberbacher, E.C., Ramakrishnan, V., Olins, D.E., Bunick, G.J. (11th October 1983)
  Neutron scattering studies of nucleosome structure at low ionic strength.
  Biochemistry 22(21): 4916-23
• Ramakrishnan, V.R., Darszon, A., Montal, M. (25th April 1983)
  A small angle x-ray scattering study of a rhodopsin-lipid complex in hexane.
  J Biol Chem 258(8): 4857-60

1981

• Ramakrishnan, V.R., Moore, P.B. (15th December 1981)
  Analysis of neutron distance data.
  J Mol Biol 153(3): 719-38
• Ramakrishnan, V.R., Yabuki, S., Sillers, I.Y., Schindler, D.G., Engelman, D.M., Moore, P.B. (15th December 1981)
  Positions of proteins S6, S11 and S15 in the 30 S ribosomal subunit of Escherichia coli.
  J Mol Biol 153(3): 739-60

1980

• Ramakrishnan, V., Darszon, A., Philipp, M., Montal, M. (1980)
  Rhodopsin in model membranes: the kinetics of channel opening and closing in rhodopsin-containing planar lipid bilayers.
  Ann N Y Acad Sci 358: 36-42